IslandPathversion 1.0

IslandPath Analysis: Bacillus pumilus SAFR-032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.07 STD DEV: 3.65
Bacillus pumilus SAFR-032, complete genome - 1..3704465
3681 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
681	 44.75	+1	768222..770105	+	627	157691479	yfmR	BPUM_0691	-	ABC transporter ATP-binding protein
682	 40.85	0	770266..770691	+	141	157691480	yfmP	BPUM_0692	-	transcriptional regulator
683	 45.00	+1	770748..771938	+	396	157691481	yfmO	BPUM_0693	-	major facilitator superfamily multidrug:cation symporter
684	 42.28	0	771984..773537	-	517	157691482	yfmM	BPUM_0694	-	ABC transporter ATP-binding protein
685	 42.17	0	773690..774832	+	380	157691483	yfmL	BPUM_0695	-	ATP-dependent RNA helicase
686	 41.89	0	775066..776070	-	334	157691484	yfmJ	BPUM_0696	-	NADP-dependent dehydrogenase
687	 41.03	0	776179..776568	-	129	157691485	yfmB	BPUM_0697	-	hypothetical protein
688	 38.51	0	776790..777137	+	115	157691486	-	BPUM_0698	-	general stress protein
689	 41.55	0	778107..778763	+	218	157691487	-	BPUM_0699	-	hypothetical protein
690	 43.11	0	779044..779769	+	241	157691488	-	BPUM_0700	-	GTP cyclohydrolase II
691	 41.87	0	780611..782368	+	585	157691489	-	BPUM_0702	-	WD-40 repeat-containing protein
692	 42.82	0	782645..783730	+	361	157691490	ribD2	BPUM_0703	-	bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine deaminase
693	 50.30	+2	786048..786719	+	223	157691491	-	BPUM_0706	-	hypothetical protein
694	 43.00	0	786826..788460	+	544	157691492	citS	BPUM_0707	-	sensor histidine kinase
695	 43.59	0	788461..789162	+	233	157691493	citT	BPUM_0708	-	response regulator
696	 42.20	0	789166..790146	+	326	157691494	yflP	BPUM_0709	-	TTT family tricarboxylate  membrane protein
697	 44.65	0	790338..791636	+	432	157691495	citM	BPUM_0710	-	CitMHS family citrate-magnesium (Mg2+):citrate symporter
698	 43.63	0	791817..793448	+	543	157691496	-	BPUM_0711	-	M14 family carboxypeptidase
699	 40.12	0	793521..794006	-	161	157691497	padC	BPUM_0712	-	phenolic acid decarboxylase
700	 42.65	0	794119..794676	+	185	157691498	padR	BPUM_0713	-	transcriptional regulator
701	 43.81	0	794781..795887	+	368	157691499	nos	BPUM_0714	-	nitric oxide synthase
702	 46.60	+1	795974..796282	-	102	157691500	-	BPUM_0715	-	acylphosphatase
703	 42.88	0	796361..797020	+	219	157691501	yflK	BPUM_0716	-	hypothetical protein
704	 36.96	-1	797063..797200	-	45	157691502	-	BPUM_0717	-	hypothetical protein
705	 36.42	-1	797335..797496	-	53	157691503	yflI	BPUM_0718	-	hypothetical protein
706	 40.13	0	797620..798369	-	249	157691504	yflG	BPUM_0719	-	methionine aminopeptidase
707	 41.06	0	798551..799921	+	456	157691505	nagP	BPUM_0720	-	PTS family glucose/glucoside (glc) porter component IIBC
708	 41.63	0	799940..800698	-	252	157691506	-	BPUM_0721	-	hypothetical protein
709	 41.27	0	800893..801396	+	167	157691507	-	BPUM_0722	-	hypothetical protein
710	 41.67	0	801441..802028	-	195	157691508	yjgB	BPUM_0723	-	hypothetical protein
711	 38.89	0	802129..804108	-	659	157691509	yflE	BPUM_0724	-	sulfatase
712	 42.98	0	804688..806346	+	552	157691510	-	BPUM_0725	-	diaminobutyrate decarboxylase
713	 40.87	0	806378..808102	+	574	157691511	-	BPUM_0726	-	sensor histidine kinase
714	 40.83	0	808345..808731	+	128	157691512	-	BPUM_0727	-	hypothetical protein
715	 45.51	+1	808895..810331	+	478	157691513	treP	BPUM_0728	-	PTS family trehalose porter component IIBC
716	 43.27	0	810347..812047	+	566	157691514	treA	BPUM_0729	-	alpha,alpha-phosphotrehalase
717	 42.11	0	812067..812795	+	242	157691515	treR	BPUM_0730	-	GntR family transcriptional regulator
718	 43.01	0	813339..817565	-	1408	157691516	yfkN	BPUM_0732	-	2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase bifunctional periplasmic precursor protein
719	 42.39	0	817883..818401	+	172	157691517	yfkM	BPUM_0733	-	C56 family peptidase
720	 37.96	0	818499..818714	-	71	157691518	yfkK	BPUM_0734	-	hypothetical protein
721	 44.03	0	818792..820147	-	451	157691519	yflA	BPUM_0735	-	AGCS family alanine or glycine:sodium (Na+) or proton (H+) symporter
722	 42.68	0	820322..820792	+	156	157691520	yfkJ	BPUM_0736	-	protein-tyrosine-phosphatase
723	 40.24	0	820813..821145	+	110	157691521	yfkI	BPUM_0737	-	hypothetical protein
724	 41.64	0	821164..821982	+	272	157691522	yfkH	BPUM_0738	-	hypothetical protein
725	 43.15	0	822192..823373	-	393	157691523	yfkF	BPUM_0739	-	major facilitator transporter
726	 41.53	0	823449..823826	+	125	157691524	-	BPUM_0740	-	hypothetical protein
727	 43.66	0	823891..824955	+	354	157691525	yfkE	BPUM_0741	-	Ca2+ antiporter
728	 46.23	+1	825023..825805	+	260	157691526	yfkD	BPUM_0742	-	sporulation protein YfkD
729	 42.50	0	826318..827037	-	239	157691527	yeeI	BPUM_0743	-	hypothetical protein
730	 39.05	0	827169..827570	-	133	157691528	-	BPUM_0744	-	hypothetical protein
731	 40.74	0	827673..828509	-	278	157691529	-	BPUM_0745	-	MscS family small conductance mechanosenstive ion channel protein
732	 44.39	0	828517..829638	-	373	157691530	yfkA	BPUM_0746	-	thioredoxin
733	 37.50	0	829785..829976	+	63	157691531	yfjT	BPUM_0747	-	hypothetical protein
734	 43.18	0	830079..830870	+	263	157691532	yfjS	BPUM_0748	-	poylsaccharide deacetylase
735	 41.46	0	830906..831397	-	163	157691533	-	BPUM_0749	-	hypothetical protein
736	 40.21	0	831430..832389	-	319	157691534	corA	BPUM_0750	-	MIT family metal ion transporter CorA
737	 42.30	0	832523..833035	-	170	157691535	-	BPUM_0751	-	hypothetical protein
738	 42.02	0	833336..834337	+	333	157691536	alkA	BPUM_0752	-	DNA-3-methyladenine glycosylase II
739	 45.60	+1	834436..835821	+	461	157691537	trmA	BPUM_0753	-	tRNA (uracil-5-)-methyltransferase
740	 33.68	-2	835953..836537	+	194	157691538	-	BPUM_0754	-	TetR family transcriptional regulator
741	 38.95	0	836595..838481	+	628	157691539	-	BPUM_0755	-	bifunctional nucleotide sugar epimerase/hydrolase
742	 41.20	0	838554..838985	+	143	157691540	-	BPUM_0756	-	hypothetical protein
743	 29.82	-2	838975..839487	+	170	157691541	-	BPUM_0757	-	hypothetical protein
744	 40.10	0	839627..840454	+	275	157691542	-	BPUM_0758	-	transcriptional regulator
745	 42.26	0	840481..841668	+	395	157691543	ybcL	BPUM_0759	-	major facilitator transporter
746	 39.32	0	841924..843108	+	394	157691544	-	BPUM_0760	-	hypothetical protein
747	 40.84	0	843710..845641	+	643	157691545	thrZ	BPUM_0761	-	threonyl-tRNA synthetase
748	 36.54	-1	845680..845835	+	51	157691546	-	BPUM_0762	-	hypothetical protein
749	 32.45	-2	845817..846383	+	188	157691547	-	BPUM_0763	-	hypothetical protein
750	 40.06	0	846410..847687	+	425	157691548	-	BPUM_0764	-	hypothetical protein
751	 38.83	0	848010..848282	+	90	157691549	-	BPUM_0765	-	hypothetical protein
752	 35.98	-1	848332..849840	-	502	157691550	-	BPUM_0766	-	transcriptional regulator
753	 38.95	0	850553..856696	+	2047	157691551	-	BPUM_0767	-	collagen adhesion protein
754	 40.80	0	856718..857320	+	200	157691552	-	BPUM_0769	-	C60A subfamily peptidase
755	 39.14	0	857313..857639	+	108	157691553	-	BPUM_0770	-	hypothetical protein
756	 43.49	0	857693..858007	-	104	157691554	-	BPUM_0771	-	DMT superfamily drug/metabolite transporter
757	 43.77	0	858008..858352	-	114	157691555	-	BPUM_0772	-	DMT superfamily drug/metabolite transporter
758	 40.63	0	858433..859158	-	241	157691556	-	BPUM_0773	-	transcriptional regulator
759	 37.89	0	859185..859733	+	182	157691557	vanZ	BPUM_0774	-	teicoplanin resistance protein VanZ
760	 43.01	0	859730..860194	+	154	157691558	yfjM	BPUM_0775	-	hypothetical protein
761	 43.49	0	860345..860974	+	209	157691559	yesY	BPUM_0776	-	rhamnogalacturan acetylesterase
762	 45.73	+1	861128..862168	+	346	157691560	ycgT	BPUM_0777	-	thioredoxin-disulfide reductase
763	 35.04	-1	862576..862809	-	77	157691561	-	BPUM_0779	-	hypothetical protein
764	 41.09	0	862909..863475	+	188	157691562	-	BPUM_0780	-	DNA-directed RNA polymerase sigma subunit
765	 43.78	0	863472..864218	+	248	157691563	-	BPUM_0781	-	hypothetical protein
766	 37.85	0	864414..864989	+	191	157691564	-	BPUM_0782	-	hypothetical protein
767	 43.96	0	865078..866103	+	341	157691565	-	BPUM_0783	-	NADPH:quinone reductase
768	 46.59	+1	866100..866627	+	175	157691566	yfiT	BPUM_0784	-	metal-dependent hydrolase
769	 37.80	0	866640..866930	+	96	157691567	-	BPUM_0785	-	hypothetical protein
770	 41.67	0	866953..867432	-	159	157691568	yfiV	BPUM_0786	-	transcriptional regulator
771	 41.93	0	867601..870171	+	856	157691569	-	BPUM_0787	-	hypothetical protein
772	 39.53	0	870263..870811	+	182	157691570	-	BPUM_0788	-	hypothetical protein
773	 40.17	0	871148..871615	+	155	157691571	-	BPUM_0789	-	hypothetical protein
774	 37.47	0	871652..872908	-	418	157691572	-	BPUM_0790	-	transcriptional activator
775	 43.54	0	873180..873767	+	195	157691573	yfhC	BPUM_0791	-	nitroreductase family protein
776	 43.59	0	874013..874168	-	51	157691574	yfhD	BPUM_0792	-	sporulation protein YfhD
777	 39.62	0	874123..874281	+	52	157691575	-	BPUM_0793	-	hypothetical protein
778	 45.60	+1	874393..875289	-	298	157691576	yfhF	BPUM_0794	-	nucleoside diphosphate sugar epimerase
779	 40.28	0	875384..876175	+	263	157691577	recX	BPUM_0795	-	recombination regulator RecX
780	 40.63	0	876179..876493	+	104	157691578	yfhH	BPUM_0796	-	hypothetical protein
41.07	MEAN

3.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.