IslandPathversion 1.0

IslandPath Analysis: Bacillus pumilus SAFR-032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.07 STD DEV: 3.65
Bacillus pumilus SAFR-032, complete genome - 1..3704465
3681 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
575	 38.74	0	621147..622034	-	295	157691373	ybfP	BPUM_0583	-	AraC family transcription regulator
576	 34.59	-1	622244..623116	+	290	157691374	ydeE	BPUM_0584	-	transcriptional regulator
577	 38.19	0	623130..623705	+	191	157691375	-	BPUM_0585	-	acetyltransferase
578	 39.86	0	623842..624408	-	188	157691376	-	BPUM_0586	-	acetyltransferase
579	 41.40	0	624413..624598	-	61	157691377	-	BPUM_0587	-	hypothetical protein
580	 36.45	-1	624778..625323	+	181	157691378	-	BPUM_0588	-	ECF family DNA-directed RNA polymerase sigma factor
581	 36.99	-1	625292..626740	+	482	157691379	-	BPUM_0589	-	hypothetical protein
582	 43.18	0	626759..627946	-	395	157691380	-	BPUM_0590	-	major facilitator transporter
583	 43.59	0	628047..628943	+	298	157691381	lysR	BPUM_0591	-	LysR family transcriptional regulator
584	 42.99	0	629305..630630	+	441	157691382	pbuG	BPUM_0592	-	NCS2 family nucleobase:cation symporter-2
585	 43.45	0	631012..631812	+	266	157691383	yebC	BPUM_0593	-	hypothetical protein
586	 39.39	0	631947..632573	+	208	157691384	yebE	BPUM_0594	-	hypothetical protein
587	 42.79	0	632570..632770	+	66	157691385	yebG	BPUM_0595	-	hypothetical protein
588	 46.01	+1	633121..633609	+	162	157691386	purE	BPUM_0596	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
589	 47.07	+1	633602..634744	+	380	157691387	purK	BPUM_0597	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
590	 43.52	0	634741..636036	+	431	157691388	purB	BPUM_0598	-	adenylosuccinate lyase
591	 40.53	0	636109..636831	+	240	157691389	purC	BPUM_0599	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
592	 42.75	0	636824..637078	+	84	157691390	purS	BPUM_0600	-	phosphoribosylformylglycinamidine synthase subunit PurS
593	 44.30	0	637075..637758	+	227	157691391	purQ	BPUM_0601	-	phosphoribosylformylglycinamidine synthase subunit I
594	 45.47	+1	637742..639973	+	743	157691392	purL	BPUM_0602	-	phosphoribosylformylglycinamidine synthase II
595	 46.61	+1	639949..641379	+	476	157691393	purF	BPUM_0603	-	amidophosphoribosyltransferase
596	 44.67	0	641475..642515	+	346	157691394	purM	BPUM_0604	-	phosphoribosylaminoimidazole synthetase
597	 45.26	+1	642512..643081	+	189	157691395	purN	BPUM_0605	-	phosphoribosylglycinamide formyltransferase
598	 44.25	0	643097..644635	+	512	157691396	purH	BPUM_0606	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
599	 47.37	+1	644648..645922	+	424	157691397	purD	BPUM_0607	-	phosphoribosylamine--glycine ligase
600	 28.58	-2	646194..649241	+	1015	157691398	-	BPUM_0608	-	helicase
601	 27.69	-2	649392..649586	+	64	157691399	-	BPUM_0609	-	hypothetical protein
602	 40.78	0	649608..650453	+	281	157691400	-	BPUM_0610	-	acetyltransferase
603	 43.88	0	650448..652106	-	552	157691401	-	BPUM_0611	-	hypothetical protein
604	 48.28	+1	652297..653661	+	454	157691402	yodT	BPUM_0612	-	hypothetical protein
605	 46.14	+1	653674..654360	+	228	157691403	atoD	BPUM_0613	-	acetate CoA-transferase alpha subunit
606	 48.35	+1	654336..655001	+	221	157691404	yodR	BPUM_0614	-	aetate CoA-transferase beta subunit
607	 48.74	+2	655016..656287	+	423	157691405	yodQ	BPUM_0615	-	acetylornithine deacetylase
608	 44.14	0	656372..656593	-	73	157691406	-	BPUM_0616	-	hypothetical protein
609	 41.88	0	656718..658460	+	580	157691407	yerA	BPUM_0617	-	adenine deaminase
610	 39.78	0	658728..658913	-	61	157691408	-	BPUM_0618	-	hypothetical protein
611	 41.27	0	659010..659324	+	104	157691409	yerC	BPUM_0619	-	sporulation protein YerC
612	 40.54	0	659384..659605	+	73	157691410	-	BPUM_0620	-	hypothetical protein
613	 43.96	0	659623..661203	-	526	157691411	yerD	BPUM_0621	-	glutamate synthase (ferredoxin)
614	 41.99	0	661343..661573	+	76	157691412	ybyB	BPUM_0622	-	hypothetical protein
615	 39.13	0	661554..661967	-	137	157691413	-	BPUM_0623	-	hypothetical protein
616	 41.48	0	662123..662932	+	269	157691414	pcrB	BPUM_0624	-	geranylgeranylglyceryl phosphate synthase-like protein
617	 42.65	0	662990..665212	+	740	157691415	pcrA	BPUM_0625	-	ATP-dependent DNA helicase
618	 44.25	0	665257..667263	+	668	157691416	ligA	BPUM_0626	-	NAD-dependent DNA ligase LigA
619	 40.40	0	667279..668466	+	395	157691417	yerH	BPUM_0627	-	hypothetical protein
620	 38.04	0	668567..669799	+	410	157691418	yfmI	BPUM_0628	-	major facilitator superfamily macrolide:cation transporter
621	 40.68	0	669948..674360	+	1470	157691419	-	BPUM_0629	-	nonribosomal peptide synthetase subunit
622	 41.63	0	674357..675898	+	513	157691420	pbpX	BPUM_0630	-	beta-lactamase
623	 41.77	0	676838..677548	+	236	157691421	bacT	BPUM_0631	-	thioesterase
624	 42.31	0	677545..678402	+	285	157691422	-	BPUM_0632	-	3-hydroxybutyryl-CoA dehydrogenase
625	 40.91	0	678417..679472	+	351	157691423	-	BPUM_0633	-	methoxymalonyl-ACP biosynthesis protein
626	 38.15	0	679500..679769	+	89	157691424	-	BPUM_0634	-	hypothetical protein
627	 43.57	0	679756..680898	+	380	157691425	-	BPUM_0635	-	acyl-CoA dehydrogenase (NADP(+))
628	 43.18	0	690025..692694	+	889	157691426	-	BPUM_0636	-	nonribosomal peptide synthetase subunit
629	 44.90	+1	692687..697192	+	1501	157691427	-	BPUM_0637	-	polyketide synthase subunit
630	 44.97	+1	697193..704443	+	2416	157691428	-	BPUM_0638	-	polyketide synthase subunit
631	 43.52	0	704436..710846	+	2136	157691429	-	BPUM_0639	-	polyketide synthase subunit
632	 42.76	0	710839..711846	+	335	157691430	yerI	BPUM_0640	-	homoserine kinase type II
633	 44.56	0	711888..713294	-	468	157691431	phoB	BPUM_0641	-	alkaline phosphatase
634	 43.29	0	713408..714100	-	230	157691432	sapB	BPUM_0642	-	membrane protein SapB
635	 39.88	0	714264..715745	-	493	157691433	opuE	BPUM_0643	-	SSS family proline/sodium (Na+) symporter OpuE
636	 39.18	0	716144..716434	+	96	157691434	gatC	BPUM_0644	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
637	 42.66	0	716449..717906	+	485	157691435	gatA	BPUM_0645	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
638	 43.61	0	717920..719350	+	476	157691436	gatB	BPUM_0646	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
639	 38.65	0	719533..720378	-	281	157691437	yerO	BPUM_0647	-	transcriptional regulator
640	 41.43	0	720510..723734	+	1074	157691438	swrC	BPUM_0648	-	resistance-nodulation-cell division acriflavin:proton (H+) antiporter
641	 42.87	0	723766..724719	-	317	157691439	-	BPUM_0649	-	purine nucleosidase
642	 42.24	0	724901..725809	+	302	157691440	yerQ	BPUM_0650	-	putative lipid kinase
643	 44.42	0	725867..727264	+	465	157691441	yefA	BPUM_0651	-	TrmA family RNA methyltransferase
644	 31.99	-2	727814..729304	+	496	157691442	-	BPUM_0652	-	ATP-binding protein
645	 33.08	-2	729297..732107	+	936	157691443	-	BPUM_0653	-	endonuclease
646	 28.96	-2	732089..733117	+	342	157691444	-	BPUM_0654	-	hypothetical protein
647	 32.32	-2	733114..734883	+	589	157691445	-	BPUM_0655	-	hypothetical protein
648	 31.33	-2	734880..736526	-	548	157691446	-	BPUM_0656	-	DNA (cytosine-5-)-methyltransferase
649	 44.00	0	736808..737782	+	324	157691447	yfjN	BPUM_0657	-	tRNA-dihydrouridine synthase
650	 40.62	0	737890..738342	+	150	157691448	-	BPUM_0658	-	hypothetical protein
651	 35.56	-1	738474..739238	-	254	157691449	glvR	BPUM_0659	-	transcriptional regulator
652	 40.29	0	739387..740967	+	526	157691450	malP	BPUM_0660	-	PTS family porter component IIBC
653	 39.43	0	740994..742322	+	442	157691451	glvA	BPUM_0661	-	maltose-6'-phosphate glucosidase
654	 42.20	0	742435..742806	-	123	157691452	-	BPUM_0662	-	hypothetical protein
655	 38.58	0	742990..743427	+	145	157691453	-	BPUM_0663	-	transcriptional regulator
656	 43.72	0	743493..744407	+	304	157691454	-	BPUM_0664	-	thioredoxin-disulfide reductase
657	 39.80	0	744417..744617	-	66	157691455	-	BPUM_0665	-	hypothetical protein
658	 41.67	0	744731..745378	+	215	157691456	-	BPUM_0666	-	hypothetical protein
659	 43.64	0	745412..746740	-	442	157691457	licH1	BPUM_0667	-	6-phospho-beta-glucosidase
660	 38.52	0	746940..747671	+	243	157691458	-	BPUM_0668	-	transcriptional regulator
661	 45.42	+1	749039..749518	+	159	157691459	-	BPUM_0671	-	prolyl-tRNA synthetase
662	 43.40	0	749549..750502	-	317	157691460	cisL	BPUM_0672	-	LysR family transcriptional regulator
663	 45.17	+1	750561..751760	+	399	157691461	-	BPUM_0673	-	major facilitator transporter
664	 38.70	0	751825..752904	-	359	157691462	yetN	BPUM_0674	-	hypothetical protein
665	 38.00	0	753103..753252	-	49	157691463	-	BPUM_0675	-	hypothetical protein
666	 43.14	0	753608..754372	+	254	157691464	yfnH	BPUM_0676	-	glucose-1-phosphate cytidylyltransferase
667	 43.58	0	754344..755348	+	334	157691465	yfnG	BPUM_0677	-	NAD-dependent epimerase/dehydratase
668	 44.52	0	755361..756272	+	303	157691466	yfnF	BPUM_0678	-	glycosyltransferase
669	 41.81	0	756269..757459	+	396	157691467	yfnE	BPUM_0679	-	glycosyltransferase
670	 38.92	0	757460..758389	+	309	157691468	yfnD	BPUM_0680	-	glycosyltransferase
671	 44.87	+1	758425..759663	-	412	157691469	-	BPUM_0681	-	major facilitator superfamily fosmidomycin:cation antiporter
672	 30.13	-2	759663..759818	+	51	157691470	-	BPUM_0682	-	hypothetical protein
673	 42.45	0	759997..762036	-	679	157691471	-	BPUM_0683	-	penicillin-binding protein
674	 43.43	0	762298..763713	+	471	157691472	-	BPUM_0684	-	DASS family divalent anion:sodium (Na+) symporter
41.07	MEAN

3.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.