IslandPathversion 1.0

IslandPath Analysis: Bacillus pumilus SAFR-032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.07 STD DEV: 3.65
Bacillus pumilus SAFR-032, complete genome - 1..3704465
3681 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3556	 41.16	0	3577720..3578715	+	331	157694354	lacR	BPUM_3612	-	LacI family transcriptional regulator LacR
3557	 42.42	0	3578886..3580151	+	421	157694355	cycB	BPUM_3613	-	cyclodextrin ABC transporter binding protein
3558	 42.62	0	3580290..3581528	+	412	157694356	yvfL	BPUM_3614	-	cyclodextrin ABC transporter membrane protein
3559	 42.47	0	3581530..3582372	+	280	157694357	yvfM	BPUM_3615	-	cyclodextrin ABC transporter membrane protein
3560	 45.00	+1	3582384..3583592	+	402	157694358	yvfO	BPUM_3616	-	arabinogalactan endo-1,4-beta-galactosidase
3561	 46.30	+1	3583616..3585682	+	688	157694359	lacA	BPUM_3617	-	beta-galactosidase
3562	 43.34	0	3585981..3587309	+	442	157694360	-	BPUM_3618	-	CitMHS family citrate-divalent cation:proton (H+) symporter
3563	 38.46	0	3587351..3587779	-	142	157694361	-	BPUM_3619	-	hypothetical protein
3564	 37.63	0	3587807..3588760	-	317	157694362	yhcI	BPUM_3620	-	ABC transporter ATP-binding protein
3565	 42.15	0	3588757..3589686	-	309	157694363	yhcH	BPUM_3621	-	ABC transporter ATP-binding protein
3566	 22.91	-2	3589877..3590797	-	306	157694364	-	BPUM_3622	-	ABC transporter ATP-binding protein
3567	 29.08	-2	3590800..3591693	-	297	157694365	-	BPUM_3623	-	ABC transporter ATP-binding protein
3568	 25.64	-2	3591686..3592036	-	116	157694366	-	BPUM_3624	-	response regulator
3569	 26.82	-2	3592046..3592567	-	173	157694367	-	BPUM_3625	-	hypothetical protein
3570	 22.86	-2	3592570..3593094	-	174	157694368	-	BPUM_3626	-	hypothetical protein
3571	 32.43	-2	3593113..3593334	-	73	157694369	-	BPUM_3627	-	hypothetical protein
3572	 35.09	-1	3593574..3593858	+	94	157694370	-	BPUM_3628	-	hypothetical protein
3573	 38.94	0	3594054..3594392	-	112	157694371	phnA	BPUM_3629	-	alkylphosphonate uptake protein
3574	 46.49	+1	3594485..3595624	-	379	157694372	glxK	BPUM_3630	-	glycerate kinase
3575	 46.00	+1	3595656..3596942	-	428	157694373	yojA	BPUM_3631	-	GntP family gluconate:proton (H+) symporter
3576	 42.59	0	3597045..3598157	-	370	157694374	ysfB	BPUM_3632	-	sugar diacid utilization regulator
3577	 40.09	0	3598319..3598969	+	216	157694375	ydgC	BPUM_3633	-	TetR family transcriptional regulator
3578	 41.49	0	3599030..3600292	+	420	157694376	-	BPUM_3634	-	major facilitator superfamily macrolide:cation symporter (or antiporter or uniporter)
3579	 38.79	0	3600289..3602616	+	775	157694377	-	BPUM_3635	-	ABC transporter ATP-binding protein
3580	 38.52	0	3602621..3603391	+	256	157694378	-	BPUM_3636	-	ABC transporter ATP-binding protein
3581	 32.39	-2	3603423..3603635	-	70	157694379	-	BPUM_3637	-	hypothetical protein
3582	 22.05	-2	3604335..3604529	+	64	157694380	-	BPUM_3638	-	hypothetical protein
3583	 29.17	-2	3604540..3605283	+	247	157694381	-	BPUM_3639	-	hypothetical protein
3584	 35.45	-1	3605471..3605659	-	62	157694382	-	BPUM_3640	-	hypothetical protein
3585	 35.79	-1	3606160..3607338	+	392	157694383	rapK	BPUM_3641	-	aspartate phosphatase response regulator K
3586	 34.98	-1	3607438..3608286	-	282	157694384	licT2	BPUM_3642	-	transcription antiterminator
3587	 39.47	0	3608317..3609783	-	488	157694385	-	BPUM_3643	-	beta-glucosidase
3588	 42.10	0	3609788..3611647	-	619	157694386	-	BPUM_3644	-	PTS family beta-glucoside (glc) porter component IIBCA
3589	 36.44	-1	3611995..3612960	-	321	157694387	-	BPUM_3645	-	hypothetical protein
3590	 37.47	0	3612989..3613882	-	297	157694388	-	BPUM_3646	-	hypothetical protein
3591	 38.77	0	3614062..3614613	+	183	157694389	-	BPUM_3647	-	transcriptional regulator
3592	 43.48	0	3614618..3615100	+	160	157694390	-	BPUM_3648	-	hypothetical protein
3593	 42.15	0	3615112..3615735	-	207	157694391	-	BPUM_3649	-	nucleoside diphosphate hydrolase
3594	 41.06	0	3615906..3616112	+	68	157694392	-	BPUM_3650	-	transcriptional regulator
3595	 39.35	0	3616109..3616789	+	226	157694393	-	BPUM_3651	-	hypothetical protein
3596	 42.61	0	3616838..3618184	-	448	157694394	aapA	BPUM_3652	-	APC family amino acid-polyamine-organocation transporter
3597	 43.01	0	3618691..3619713	+	340	157694395	degA	BPUM_3653	-	LacI family transcriptional regulator
3598	 26.94	-2	3619710..3620006	+	98	157694396	-	BPUM_3654	-	hypothetical protein
3599	 41.62	0	3620158..3621339	+	393	157694397	yfkL1	BPUM_3655	-	major facilitator transporter
3600	 41.31	0	3621358..3622260	+	300	157694398	-	BPUM_3656	-	shikimate dehydrogenase
3601	 44.72	0	3622489..3623682	-	397	157694399	yfkL2	BPUM_3657	-	major facilitator transporter
3602	 34.63	-1	3624015..3624629	-	204	157694400	-	BPUM_3658	-	hypothetical protein
3603	 40.45	0	3625067..3626302	-	411	157694401	-	BPUM_3659	-	tellurium resistance protein
3604	 28.40	-2	3626464..3626625	+	53	157694402	-	BPUM_3660	-	hypothetical protein
3605	 40.16	0	3626630..3627610	-	326	157694403	-	BPUM_3661	-	hypothetical protein
3606	 43.49	0	3627766..3629202	-	478	157694404	bglA	BPUM_3662	-	6-phospho-beta-glucosidase
3607	 40.65	0	3629391..3630101	+	236	157694405	yydK	BPUM_3663	-	transcriptional regulator
3608	 33.23	-2	3630151..3631161	-	336	157694406	-	BPUM_3664	-	hypothetical protein
3609	 39.06	0	3631243..3633354	-	703	157694407	-	BPUM_3665	-	hypothetical protein
3610	 46.04	+1	3633667..3634563	+	298	157694408	-	BPUM_3666	-	phenazine biosynthesis protein
3611	 43.41	0	3634607..3635479	-	290	157694409	yvbU	BPUM_3667	-	LysR family transcriptional regulator
3612	 41.57	0	3635485..3635994	-	169	157694410	yxjI	BPUM_3668	-	hypothetical protein
3613	 35.37	-1	3636100..3636345	-	81	157694411	-	BPUM_3669	-	hypothetical protein
3614	 42.86	0	3636512..3637057	-	181	157694412	-	BPUM_3670	-	hypothetical protein
3615	 37.08	-1	3637140..3637406	+	88	157694413	-	BPUM_3671	-	hypothetical protein
3616	 34.48	-1	3637403..3637663	+	86	157694414	-	BPUM_3672	-	hypothetical protein
3617	 41.22	0	3637721..3638569	-	282	157694415	-	BPUM_3673	-	Zn-dependent hydrolase
3618	 25.00	-2	3638676..3641123	-	815	157694416	-	BPUM_3674	-	DNA helicase
3619	 28.08	-2	3641133..3641894	-	253	157694417	-	BPUM_3675	-	hypothetical protein
3620	 44.17	0	3642589..3643068	-	159	157694418	yydA	BPUM_3676	-	SPOUT methyltransferase superfamily protein
3621	 43.92	0	3643481..3644311	-	276	157694419	cbiQ	BPUM_3677	-	cobalt ABC transporter
3622	 44.93	+1	3644302..3646017	-	571	157694420	ykoD	BPUM_3678	-	cobalt ABC transporter ATP-binding protein
3623	 46.06	+1	3646037..3646594	-	185	157694421	-	BPUM_3679	-	hypothetical protein
3624	 44.60	0	3646609..3647469	-	286	157694422	-	BPUM_3680	-	hypothetical protein
3625	 36.09	-1	3648043..3648732	+	229	157694423	-	BPUM_3681	-	hypothetical protein
3626	 44.33	0	3648733..3649614	+	293	157694424	-	BPUM_3682	-	multidrug ABC transporter ATP-binding protein
3627	 43.76	0	3649654..3650190	-	178	157694425	yycN	BPUM_3683	-	GNAT family acetyltransferase
3628	 47.64	+1	3650187..3651374	-	395	157694426	yyxA	BPUM_3684	-	peptidase
3629	 46.16	+1	3651456..3652250	-	264	157694427	yycJ	BPUM_3685	-	metallo-beta-lactamase family protein
3630	 41.78	0	3652257..3653120	-	287	157694428	yycI	BPUM_3686	-	hypothetical protein
3631	 43.99	0	3653107..3654495	-	462	157694429	yycH	BPUM_3687	-	hypothetical protein
3632	 43.07	0	3654476..3656314	-	612	157694430	yycG	BPUM_3688	-	sensor histidine kinase
3633	 43.79	0	3656322..3657029	-	235	157694431	yycF	BPUM_3689	-	response regulator
3634	 41.14	0	3658119..3658643	+	174	157694432	-	BPUM_3690	-	peroxiredoxin
3635	 40.95	0	3658874..3659083	-	69	157694433	-	BPUM_3691	-	hypothetical protein
3636	 44.44	0	3659099..3660232	-	377	157694434	-	BPUM_3692	-	hypothetical protein
3637	 43.95	0	3660369..3661658	-	429	157694435	purA	BPUM_3693	-	adenylosuccinate synthetase
3638	 41.50	0	3661875..3662486	-	203	157694436	-	BPUM_3694	-	TetR family transcriptional regulator
3639	 45.11	+1	3662593..3663798	+	401	157694437	-	BPUM_3695	-	cytochrome P450
3640	 46.62	+1	3663829..3664242	-	137	157694438	yycE	BPUM_3696	-	hypothetical protein
3641	 44.84	+1	3664372..3665736	-	454	157694439	dnaC	BPUM_3697	-	replicative DNA helicase
3642	 35.20	-1	3665947..3666912	-	321	157694440	ybdO	BPUM_3698	-	hypothetical protein
3643	 36.13	-1	3667022..3667879	+	285	157694441	ybdN	BPUM_3699	-	hypothetical protein
3644	 41.13	0	3668226..3669842	+	538	157694442	ybbB	BPUM_3700	-	AraC family transcription regulator
3645	 39.40	0	3669941..3670912	+	323	157694443	feuA	BPUM_3701	-	iron-binding ABC transporter ATP-binding protein
3646	 45.77	+1	3670959..3671690	+	243	157694444	ybbA	BPUM_3702	-	esterase
3647	 40.35	0	3671757..3671927	+	56	157694445	yycC	BPUM_3703	-	hypothetical protein
3648	 46.90	+1	3671949..3673157	+	402	157694446	-	BPUM_3704	-	major facilitator transporter
3649	 42.00	0	3673203..3673652	-	149	157694447	rplI	BPUM_3705	-	50S ribosomal protein L9
3650	 43.34	0	3673649..3675637	-	662	157694448	yybT	BPUM_3706	-	DHH family phosphoesterase
3651	 41.27	0	3675659..3676615	-	318	157694449	yybS	BPUM_3707	-	hypothetical protein
3652	 40.99	0	3676900..3677826	+	308	157694450	ppaC	BPUM_3708	-	putative manganese-dependent inorganic pyrophosphatase
3653	 38.34	0	3677874..3678731	-	285	157694451	yrhM	BPUM_3709	-	anti-SigV factor
3654	 38.59	0	3678732..3679226	-	164	157694452	sigV	BPUM_3710	-	ECF family DNA-directed RNA polymerase sigma subunit SigV
3655	 42.47	0	3679375..3680031	-	218	157694453	-	BPUM_3711	-	hypothetical protein
41.07	MEAN

3.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.