IslandPathversion 1.0

IslandPath Analysis: Bacillus pumilus SAFR-032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.07 STD DEV: 3.65
Bacillus pumilus SAFR-032, complete genome - 1..3704465
3681 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2792	 40.03	0	2835144..2835785	-	213	157693590	comA	BPUM_2837	-	response regulator ComA
2793	 34.85	-1	2835866..2838172	-	768	157693591	comP	BPUM_2838	-	sensor histidine kinase ComP
2794	 34.50	-1	2838186..2838356	-	56	157693592	comX	BPUM_2839	-	competence pheromone precursor ComX
2795	 35.71	-1	2838334..2839257	-	307	157693593	-	BPUM_2840	-	hypothetical protein
2796	 27.66	-2	2839409..2839549	-	46	157693594	degQ	BPUM_2841	-	degradation enzyme regulation protein DegQ
2797	 48.02	+1	2840055..2840408	+	117	157693595	-	BPUM_2842	-	hypothetical protein
2798	 39.04	0	2840440..2841666	-	408	157693596	-	BPUM_2843	-	metal-dependent hydrolase
2799	 41.56	0	2841806..2843275	-	489	157693597	pncB	BPUM_2844	-	nicotinate phosphoribosyltransferase
2800	 42.21	0	2843293..2843844	-	183	157693598	pncA	BPUM_2845	-	nicotinamidase
2801	 41.42	0	2843905..2844312	-	135	157693599	-	BPUM_2846	-	hypothetical protein
2802	 38.35	0	2844339..2844677	-	112	157693600	-	BPUM_2847	-	hypothetical protein
2803	 44.59	0	2844684..2844905	-	73	157693601	yueG1	BPUM_2848	-	spore germination protein YueG1
2804	 46.85	+1	2845005..2845226	-	73	157693602	yueG2	BPUM_2849	-	spore germination protein YueG2
2805	 40.94	0	2845293..2846396	-	367	157693603	-	BPUM_2850	-	hypothetical protein
2806	 42.62	0	2846582..2846818	-	78	157693604	-	BPUM_2851	-	hypothetical protein
2807	 43.16	0	2847001..2848485	+	494	157693605	-	BPUM_2852	-	hypothetical protein
2808	 44.01	0	2848482..2849015	-	177	157693606	-	BPUM_2853	-	metal-dependent phosphohydrolase
2809	 45.02	+1	2849161..2849853	-	230	157693607	-	BPUM_2854	-	short chain dehydrogenase
2810	 41.98	0	2850003..2850488	-	161	157693608	-	BPUM_2855	-	hypothetical protein
2811	 40.55	0	2850478..2853375	-	965	157693609	-	BPUM_2856	-	hypothetical protein
2812	 42.38	0	2853372..2857847	-	1491	157693610	-	BPUM_2857	-	FtsK/SpoIIIE family cell division protein YukA
2813	 39.94	0	2857899..2859215	-	438	157693611	-	BPUM_2858	-	hypothetical protein
2814	 40.00	0	2859230..2859469	-	79	157693612	yukD	BPUM_2859	-	hypothetical protein
2815	 41.16	0	2859565..2859858	-	97	157693613	-	BPUM_2860	-	hypothetical protein
2816	 39.76	0	2860263..2861492	+	409	157693614	-	BPUM_2861	-	hypothetical protein
2817	 44.33	0	2861603..2862739	+	378	157693615	ald	BPUM_2862	-	alanine dehydrogenase
2818	 44.05	0	2862855..2863451	+	198	157693616	bioY	BPUM_2863	-	biotin synthesis protein BioY
2819	 42.86	0	2863509..2864285	-	258	157693617	spo0M	BPUM_2864	-	stage 0 sporulation control protein M
2820	 43.64	0	2864463..2865791	-	442	157693618	-	BPUM_2865	-	GntP family gluconate:proton (H+) symporter
2821	 43.66	0	2865933..2867423	-	496	157693619	pepA	BPUM_2866	-	leucyl aminopeptidase
2822	 36.84	-1	2867463..2867576	+	37	157693620	-	BPUM_2867	-	hypothetical protein
2823	 43.82	0	2867749..2868225	+	158	157693621	-	BPUM_2868	-	acid phosphatase/vanadium-dependent haloperoxidase
2824	 42.17	0	2868269..2868913	-	214	157693622	-	BPUM_2869	-	lipoprotein
2825	 36.14	-1	2869014..2869334	-	106	157693623	-	BPUM_2870	-	hypothetical protein
2826	 36.84	-1	2869416..2869643	-	75	157693624	-	BPUM_2871	-	hypothetical protein
2827	 41.91	0	2869672..2870883	-	403	157693625	-	BPUM_2872	-	NADH dehydrogenase
2828	 43.64	0	2871280..2872278	+	332	157693626	-	BPUM_2873	-	ferredoxin--NAD(+) reductase
2829	 45.89	+1	2872325..2872531	-	68	157693627	-	BPUM_2874	-	hypothetical protein
2830	 35.01	-1	2872727..2873143	+	138	157693628	-	BPUM_2875	-	hypothetical protein
2831	 46.56	+1	2873264..2873626	-	120	157693629	-	BPUM_2876	-	iron sulfur assembly protein
2832	 44.09	0	2873700..2874554	-	284	157693630	dapF	BPUM_2877	-	diaminopimelate epimerase
2833	 35.76	-1	2874573..2874737	+	54	157693631	-	BPUM_2878	-	hypothetical protein
2834	 41.35	0	2874825..2875061	-	78	157693632	-	BPUM_2879	-	hypothetical protein
2835	 33.93	-1	2875063..2875230	+	55	157693633	-	BPUM_2880	-	hypothetical protein
2836	 42.60	0	2875317..2876384	+	355	157693634	-	BPUM_2881	-	NADH dehydrogenase
2837	 40.26	0	2876434..2876664	-	76	157693635	-	BPUM_2882	-	hypothetical protein
2838	 37.27	-1	2876765..2877094	-	109	157693636	-	BPUM_2883	-	hypothetical protein
2839	 43.46	0	2877279..2877515	+	78	157693637	-	BPUM_2884	-	iron-sulfur assembly protein
2840	 45.05	+1	2877559..2879529	-	656	157693638	-	BPUM_2885	-	peptidase
2841	 45.66	+1	2879833..2880765	-	310	157693639	thrB	BPUM_2886	-	homoserine kinase
2842	 46.33	+1	2880762..2881823	-	353	157693640	thrC1	BPUM_2887	-	threonine synthase
2843	 41.63	0	2881823..2883124	-	433	157693641	thrA	BPUM_2888	-	homoserine dehydrogenase
2844	 47.66	+1	2883333..2884316	-	327	157693642	-	BPUM_2889	-	D-isomer specific 2-hydroxyacid dehydrogenase
2845	 43.15	0	2884402..2885430	-	342	157693643	cotS	BPUM_2890	-	spore coat protein S
2846	 42.12	0	2885545..2886045	+	166	157693644	pgpA	BPUM_2891	-	phosphatidylglycerophosphatase
2847	 42.41	0	2886087..2886857	-	256	157693645	-	BPUM_2892	-	HAD family hydrolase
2848	 43.45	0	2886879..2887313	-	144	157693646	-	BPUM_2893	-	hypothetical protein
2849	 35.14	-1	2887333..2887608	-	91	157693647	-	BPUM_2894	-	hypothetical protein
2850	 42.77	0	2887729..2888364	+	211	157693648	-	BPUM_2895	-	lipoprotein
2851	 43.26	0	2888404..2889300	-	298	157693649	lipA	BPUM_2896	-	lipoyl synthase
2852	 44.34	0	2889591..2890571	+	326	157693650	-	BPUM_2897	-	M23B subfamily peptidase
2853	 30.30	-2	2890628..2890858	-	76	157693651	-	BPUM_2898	-	hypothetical protein
2854	 42.02	0	2890985..2891755	-	256	157693652	yunB	BPUM_2899	-	sporulation protein YunB
2855	 43.79	0	2891825..2892130	-	101	157693653	-	BPUM_2900	-	hypothetical protein
2856	 43.89	0	2892198..2893571	-	457	157693654	ushA	BPUM_2901	-	bifunctional 5'-nucleotidase/2',3'-cyclic phosphodiesterase
2857	 42.49	0	2893635..2894486	-	283	157693655	-	BPUM_2902	-	hypothetical protein
2858	 42.81	0	2894805..2895965	+	386	157693656	-	BPUM_2903	-	transcriptional regulator
2859	 46.25	+1	2896030..2897190	+	386	157693657	-	BPUM_2904	-	hypothetical protein
2860	 43.91	0	2897242..2898432	-	396	157693658	-	BPUM_2905	-	major facilitator superfamily multidrug:cation symporter
2861	 45.93	+1	2898593..2899846	-	417	157693659	-	BPUM_2906	-	aminotransferase
2862	 45.39	+1	2899997..2900875	+	292	157693660	end1	BPUM_2907	-	deoxyribonuclease I
2863	 44.22	0	2900890..2901633	-	247	157693661	-	BPUM_2908	-	hypothetical protein
2864	 45.57	+1	2901656..2902693	-	345	157693662	-	BPUM_2909	-	iron ABC transporter membrane protein
2865	 45.72	+1	2902686..2903702	-	338	157693663	-	BPUM_2910	-	iron ABC transporter membrane protein
2866	 39.94	0	2903773..2904726	-	317	157693664	-	BPUM_2911	-	iron ABC transporter
2867	 43.56	0	2904866..2905774	-	302	157693665	-	BPUM_2912	-	lysophospholipase
2868	 38.33	0	2905840..2906739	-	299	157693666	-	BPUM_2913	-	hydrolase
2869	 38.69	0	2907047..2907475	-	142	157693667	psiE	BPUM_2914	-	phosphate-starvation-inducible protein PsiE
2870	 43.12	0	2907513..2908820	-	435	157693668	-	BPUM_2915	-	sensor histidine kinase
2871	 42.67	0	2908807..2909502	-	231	157693669	-	BPUM_2916	-	response regulator
2872	 27.27	-2	2909601..2909699	+	32	157693670	-	BPUM_2917	-	hypothetical protein
2873	 41.19	0	2909755..2910963	+	402	157693671	-	BPUM_2918	-	hypothetical protein
2874	 27.40	-2	2911073..2913076	-	667	157693672	-	BPUM_2919	-	hypothetical protein
2875	 34.62	-1	2914129..2915061	-	310	157693673	-	BPUM_2921	-	hypothetical protein
2876	 35.94	-1	2915146..2915796	+	216	157693674	acpH	BPUM_2922	-	[acyl-carrier-protein] phosphodiesterase
2877	 42.42	0	2915861..2917258	-	465	157693675	sufB	BPUM_2923	-	ABC transporter ATP-binding protein
2878	 41.83	0	2917276..2917722	-	148	157693676	nifU	BPUM_2924	-	Fe-S cluster assembly protein NifU
2879	 46.11	+1	2917712..2918932	-	406	157693677	csd	BPUM_2925	-	cysteine desulfurase
2880	 42.16	0	2918932..2920245	-	437	157693678	sufD	BPUM_2926	-	iron ABC transporter membrane protein
2881	 42.11	0	2920264..2921049	-	261	157693679	sufC	BPUM_2927	-	iron ABC transporter ATP-binding protein
2882	 42.86	0	2921261..2921428	-	55	157693680	-	BPUM_2928	-	hypothetical protein
2883	 43.90	0	2921614..2921982	-	122	157693681	-	BPUM_2929	-	carboxymuconolactone decarboxylase
2884	 37.47	0	2922087..2922908	-	273	157693682	-	BPUM_2930	-	ABC transporter ATP-binding protein
2885	 40.66	0	2922923..2923591	-	222	157693683	-	BPUM_2931	-	ABC transporter ATP-binding protein
2886	 44.05	0	2923584..2924609	-	341	157693684	-	BPUM_2932	-	ABC transporter ATP-binding protein
2887	 43.14	0	2924645..2924797	+	50	157693685	-	BPUM_2933	-	hypothetical protein
2888	 41.81	0	2924975..2925316	-	113	157693686	-	BPUM_2934	-	hypothetical protein
2889	 38.94	0	2925437..2925739	-	100	157693687	-	BPUM_2935	-	thioredoxin
2890	 42.37	0	2925752..2926105	-	117	157693688	-	BPUM_2936	-	TOPRIM domain-containing protein
2891	 37.80	0	2926225..2926470	-	81	157693689	-	BPUM_2937	-	hypothetical protein
41.07	MEAN

3.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.