IslandPathversion 1.0

IslandPath Analysis: Bacillus pumilus SAFR-032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.07 STD DEV: 3.65
Bacillus pumilus SAFR-032, complete genome - 1..3704465
3681 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2116	 42.92	0	2177104..2178198	-	364	157692914	bcd	BPUM_2147	-	leucine dehydrogenase
2117	 46.42	+1	2178224..2179117	-	297	157692915	-	BPUM_2148	-	phosphate butyryltransferase
2118	 42.02	0	2179244..2181316	-	690	157692916	rocR	BPUM_2149	-	transcriptional regulator
2119	 40.08	0	2181466..2181702	+	78	157692917	yqzF	BPUM_2150	-	hypothetical protein
2120	 41.06	0	2181738..2182475	-	245	157692918	glpQ	BPUM_2151	-	glycerophosphodiester phosphodiesterase
2121	 34.24	-1	2182706..2183806	-	366	157692919	-	BPUM_2152	-	hypothetical protein
2122	 36.08	-1	2183794..2184084	-	96	157692920	-	BPUM_2153	-	hypothetical protein
2123	 42.29	0	2184263..2185066	-	267	157692921	spo0A	BPUM_2154	-	stage 0 sporulation protein A
2124	 41.47	0	2185352..2186629	-	425	157692922	spoIVB	BPUM_2155	-	stage IV sporulation S55 family serine peptidase
2125	 43.41	0	2186828..2188564	-	578	157692923	recN	BPUM_2156	-	DNA repair protein RecN
2126	 38.44	0	2188598..2189047	-	149	157692924	ahrC	BPUM_2157	-	arginine repressor
2127	 43.51	0	2189208..2190062	-	284	157692925	yqxC	BPUM_2158	-	hemolysin A
2128	 43.95	0	2190059..2191960	-	633	157692926	dxs	BPUM_2159	-	1-deoxy-D-xylulose-5-phosphate synthase
2129	 42.65	0	2192111..2193001	-	296	157692927	yqiD	BPUM_2160	-	geranyltranstransferase
2130	 39.85	0	2192991..2193251	-	86	157692928	xseB	BPUM_2161	-	exodeoxyribonuclease VII small subunit
2131	 43.95	0	2193248..2194594	-	448	157692929	xseA	BPUM_2162	-	exodeoxyribonuclease VII large subunit
2132	 40.85	0	2194665..2195516	-	283	157692930	folD	BPUM_2163	-	bifunctional methylenetetrahydrofolate dehydrogenase (NADP(+))/methenyltetrahydrofolate cyclohydrolase
2133	 39.14	0	2195528..2195923	-	131	157692931	nusB	BPUM_2164	-	transcription antitermination protein NusB
2134	 38.73	0	2196134..2196541	-	135	157692932	yqhY	BPUM_2165	-	hypothetical protein
2135	 41.93	0	2196567..2197916	-	449	157692933	accC	BPUM_2166	-	acetyl-CoA carboxylase biotin carboxylase subunit
2136	 41.82	0	2197928..2198410	-	160	157692934	accB	BPUM_2167	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
2137	 39.94	0	2198607..2199242	-	211	157692935	spoIIIAH	BPUM_2168	-	stage III sporulation protein AH
2138	 40.48	0	2199239..2199910	-	223	157692936	spoIIIAG	BPUM_2169	-	stage III sporulation protein AG
2139	 42.34	0	2199903..2200535	-	210	157692937	spoIIIAF	BPUM_2170	-	stage III sporulation protein AF
2140	 44.56	0	2200550..2201743	-	397	157692938	spoIIIAE	BPUM_2171	-	stage III sporulation protein AE
2141	 39.81	0	2201763..2202071	-	102	157692939	spoIIIAD	BPUM_2172	-	stage III sporulation protein AD
2142	 38.65	0	2202173..2202379	-	68	157692940	spoIIIAC	BPUM_2173	-	stage III sporulation protein AC
2143	 43.80	0	2202399..2202914	-	171	157692941	spoIIIAB	BPUM_2174	-	stage III sporulation protein SpoAB
2144	 46.10	+1	2202908..2203831	-	307	157692942	spoIIIAA	BPUM_2175	-	stage III sporulation protein AA
2145	 42.20	0	2203898..2204179	-	93	157692943	yqhV	BPUM_2176	-	hypothetical protein
2146	 41.04	0	2204559..2205116	-	185	157692944	efp	BPUM_2177	-	elongation factor P
2147	 44.07	0	2205142..2206203	-	353	157692945	yqhT	BPUM_2178	-	M24B subfamily peptidase
2148	 43.02	0	2206200..2206643	-	147	157692946	aroQ	BPUM_2179	-	3-dehydroquinate dehydratase
2149	 41.10	0	2206752..2207279	-	175	157692947	yqhR	BPUM_2180	-	hypothetical protein
2150	 41.59	0	2207502..2208458	+	318	157692948	yqhQ	BPUM_2181	-	hypothetical protein
2151	 41.16	0	2208497..2208892	+	131	157692949	yqhP	BPUM_2182	-	hypothetical protein
2152	 45.55	+1	2208889..2209764	-	291	157692950	yqhO	BPUM_2183	-	esterase
2153	 37.24	-1	2209868..2210302	-	144	157692951	-	BPUM_2184	-	manganese transport transcriptional regulator
2154	 43.37	0	2210389..2211225	-	278	157692952	-	BPUM_2185	-	lipoate protein ligase A
2155	 41.34	0	2211440..2211826	+	128	157692953	yqhL	BPUM_2186	-	hypothetical protein
2156	 44.67	0	2211870..2213360	-	496	157692954	gcvPB	BPUM_2187	-	glycine dehydrogenase subunit 2
2157	 44.10	0	2213320..2214666	-	448	157692955	gcvPA	BPUM_2188	-	glycine dehydrogenase subunit 1
2158	 43.72	0	2214683..2215780	-	365	157692956	gcvT	BPUM_2189	-	aminomethyltransferase
2159	 41.11	0	2216342..2218012	+	556	157692957	yqhH	BPUM_2190	-	SNF2 family helicase
2160	 41.60	0	2218027..2218824	+	265	157692958	yqhG	BPUM_2191	-	hypothetical protein
2161	 38.79	0	2219007..2219171	+	54	157692959	sinI	BPUM_2192	-	SinR antagonist
2162	 38.99	0	2219205..2219540	+	111	157692960	sinR	BPUM_2193	-	transcriptional regulator SinR
2163	 41.32	0	2219608..2220408	-	266	157692961	cotN	BPUM_2194	-	translocation-dependent anti spore component
2164	 42.58	0	2220466..2221038	-	190	157692962	sipW	BPUM_2195	-	signal peptidase
2165	 37.31	-1	2221090..2221617	-	175	157692963	yqxM	BPUM_2196	-	hypothetical protein
2166	 39.76	0	2221869..2222195	+	108	157692964	yqzG	BPUM_2197	-	hypothetical protein
2167	 35.90	-1	2222230..2222424	-	64	157692965	yqzE	BPUM_2198	-	hypothetical protein
2168	 42.71	0	2222484..2222867	-	127	157692966	-	BPUM_2199	-	hypothetical protein
2169	 41.78	0	2222864..2223313	-	149	157692967	comGF	BPUM_2200	-	competence protein GF
2170	 37.42	-1	2223303..2223620	-	105	157692968	comGE	BPUM_2201	-	competence protein GE
2171	 38.13	0	2223604..2223999	-	131	157692969	comGD	BPUM_2202	-	competence protein GD
2172	 36.39	-1	2224043..2224336	-	97	157692970	comGC	BPUM_2203	-	competence protein GC
2173	 40.25	0	2224353..2225393	-	346	157692971	comGB	BPUM_2204	-	competence protein GB
2174	 40.43	0	2225374..2226444	-	356	157692972	comGA	BPUM_2205	-	competence protein GA
2175	 41.01	0	2226622..2227494	-	290	157692973	yqhA	BPUM_2206	-	hypothetical protein
2176	 34.65	-1	2227717..2228097	-	126	157692974	yqgZ	BPUM_2207	-	ArsC family transcription regulator
2177	 38.27	0	2228311..2228553	+	80	157692975	yqgY	BPUM_2208	-	hypothetical protein
2178	 41.86	0	2228600..2229244	-	214	157692976	yqgX	BPUM_2209	-	hypothetical protein
2179	 40.91	0	2229372..2229569	+	65	157692977	yqgW	BPUM_2210	-	hypothetical protein
2180	 38.73	0	2229794..2230108	-	104	157692978	yqgV	BPUM_2211	-	hypothetical protein
2181	 40.62	0	2230187..2231641	-	484	157692979	yvqJ2	BPUM_2212	-	major facilitator transporter
2182	 42.58	0	2231598..2232722	-	374	157692980	yqgT	BPUM_2213	-	M14 family gamma-D-glutamyl-{L}-meso-diaminopimelate peptidase 1
2183	 36.82	-1	2232809..2234728	-	639	157692981	yqgS	BPUM_2214	-	phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase
2184	 46.12	+1	2234942..2235895	-	317	157692982	glcK	BPUM_2215	-	glucokinase
2185	 36.11	-1	2235909..2236124	-	71	157692983	yqgQ	BPUM_2216	-	hypothetical protein
2186	 42.11	0	2236183..2237721	-	512	157692984	yqgP	BPUM_2217	-	peptidase
2187	 35.59	-1	2237808..2237984	-	58	157692985	yqgO	BPUM_2218	-	hypothetical protein
2188	 44.39	0	2238218..2238778	-	186	157692986	yqgN	BPUM_2219	-	5-formyltetrahydrofolate cyclo-ligase
2189	 35.33	-1	2238827..2238976	-	49	157692987	rpmGA	BPUM_2220	-	50S ribosomal protein L33
2190	 37.93	0	2239396..2239743	+	115	157692988	yqzD	BPUM_2221	-	hypothetical protein
2191	 38.92	0	2239740..2240240	+	166	157692989	yqzC	BPUM_2222	-	hypothetical protein
2192	 41.04	0	2240283..2241074	-	263	157692990	pstBB	BPUM_2223	-	phosphate ABC transporter ATP-binding protein
2193	 41.94	0	2241080..2241892	-	270	157692991	pstBA	BPUM_2224	-	phosphate ABC transporter ATP-binding protein
2194	 43.62	0	2241916..2242800	-	294	157692992	pstA	BPUM_2225	-	phosphate ABC transporter ATP-binding protein
2195	 43.80	0	2242800..2243726	-	308	157692993	pstC	BPUM_2226	-	phosphate ABC transporter ATP-binding protein
2196	 40.63	0	2243806..2244723	-	305	157692994	pstS	BPUM_2227	-	phosphate ABC transporter ATP-binding protein
2197	 42.01	0	2244938..2247139	-	733	157692995	pbpA	BPUM_2228	-	penicillin-binding protein 2A
2198	 42.04	0	2247196..2248482	-	428	157692996	yqgE	BPUM_2229	-	major facilitator superfamily sugar transporter
2199	 43.19	0	2248605..2249213	-	202	157692997	sodA	BPUM_2230	-	manganese (Mn) superoxide dismutase SodA
2200	 41.15	0	2249400..2249885	-	161	157692998	yqgC	BPUM_2231	-	hypothetical protein
2201	 37.48	0	2250029..2250799	+	256	157692999	yqgB	BPUM_2232	-	hypothetical protein
2202	 39.52	0	2250855..2251484	-	209	157693000	-	BPUM_2233	-	ribosomal-protein-alanine N-acetyltransferase
2203	 40.59	0	2251590..2251892	+	100	157693001	yqfZ	BPUM_2234	-	hypothetical protein
2204	 42.23	0	2251998..2253110	+	370	157693002	ispG	BPUM_2235	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
2205	 44.90	+1	2253157..2253519	-	120	157693003	yqfX	BPUM_2236	-	hypothetical protein
2206	 41.62	0	2253659..2254237	+	192	157693004	yqfW	BPUM_2237	-	hypothetical protein
2207	 44.12	0	2254457..2255374	-	305	157693005	-	BPUM_2238	-	NagC/XylR family transcriptional regulator
2208	 32.52	-2	2255596..2256210	-	204	157693006	-	BPUM_2239	-	internalin G
2209	 31.48	-2	2256247..2256408	-	53	157693007	-	BPUM_2240	-	hypothetical protein
2210	 37.30	-1	2256646..2257074	-	142	157693008	zur	BPUM_2241	-	Fur family transcriptional regulator Zur
2211	 41.11	0	2257052..2257912	-	286	157693009	yceA	BPUM_2242	-	ABC transporter ATP-binding protein
2212	 42.21	0	2257912..2258688	-	258	157693010	ycdI	BPUM_2243	-	iron ABC transporter permease
2213	 37.32	-1	2258824..2259702	-	292	157693011	yqfU	BPUM_2244	-	hypothetical protein
2214	 40.78	0	2259842..2260096	+	84	157693012	yqfT	BPUM_2245	-	hypothetical protein
2215	 41.41	0	2260145..2261035	-	296	157693013	nfo	BPUM_2246	-	endonuclease IV
41.07	MEAN

3.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.