IslandPathversion 1.0

IslandPath Analysis: Bacillus pumilus SAFR-032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.07 STD DEV: 3.65
Bacillus pumilus SAFR-032, complete genome - 1..3704465
3681 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1967	 38.51	0	2046041..2046793	-	250	157692765	trpC	BPUM_1997	-	indole-3-glycerol-phosphate synthase
1968	 43.60	0	2046786..2047808	-	340	157692766	trpD	BPUM_1998	-	anthranilate phosphoribosyltransferase
1969	 41.28	0	2047780..2049327	-	515	157692767	trpE	BPUM_1999	-	anthranilate synthase component I
1970	 42.71	0	2049560..2049943	-	127	157692768	aroH	BPUM_2000	-	chorismate mutase
1971	 43.68	0	2049940..2051031	-	363	157692769	aroB	BPUM_2001	-	3-dehydroquinate synthase
1972	 44.67	0	2051031..2052203	-	390	157692770	aroF	BPUM_2002	-	chorismate synthase
1973	 36.79	-1	2052277..2053056	-	259	157692771	cheR	BPUM_2003	-	protein-glutamate O-methyltransferase
1974	 39.15	0	2053201..2053647	-	148	157692772	ndk	BPUM_2004	-	nucleoside diphosphate kinase
1975	 40.39	0	2053778..2054740	-	320	157692773	hepT	BPUM_2005	-	heptaprenyl diphosphate synthase component II
1976	 42.27	0	2054765..2055469	-	234	157692774	menH	BPUM_2006	-	ubiquinone/menaquinone biosynthesis methyltransferase
1977	 38.15	0	2055473..2056240	-	255	157692775	hepS	BPUM_2007	-	trans-hexaprenyltranstransferase subunit 1
1978	 40.80	0	2056355..2056555	-	66	157692776	mtrB	BPUM_2008	-	transcription attenuation protein MtrB
1979	 42.81	0	2056610..2057179	-	189	157692777	folE	BPUM_2009	-	GTP cyclohydrolase I
1980	 40.50	0	2057370..2057648	-	92	157692778	hbs	BPUM_2010	-	non-specific DNA-binding protein HBsu
1981	 43.34	0	2058023..2059501	-	492	157692779	spoIVA	BPUM_2011	-	spore cortex-coat assembly protein
1982	 40.50	0	2059706..2060431	-	241	157692780	yphF	BPUM_2012	-	hypothetical protein
1983	 39.22	0	2060449..2060652	-	67	157692781	yphE	BPUM_2013	-	hypothetical protein
1984	 45.09	+1	2060918..2061955	-	345	157692782	gpsA	BPUM_2014	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1985	 41.27	0	2061970..2063280	-	436	157692783	yphC	BPUM_2015	-	GTP-binding protein EngA
1986	 38.97	0	2063440..2063634	-	64	157692784	-	BPUM_2016	-	hypothetical protein
1987	 42.03	0	2063641..2064525	-	294	157692785	seaA	BPUM_2017	-	spore envelope protein
1988	 39.97	0	2064522..2065124	-	200	157692786	yphA	BPUM_2018	-	hypothetical protein
1989	 40.00	0	2065197..2065376	+	59	157692787	-	BPUM_2019	-	hypothetical protein
1990	 43.91	0	2065428..2066495	-	355	157692788	fni	BPUM_2020	-	isopentenyl pyrophosphate isomerase
1991	 41.49	0	2066510..2067661	-	383	157692789	rpsA	BPUM_2021	-	30S ribosomal protein S1
1992	 44.54	0	2067885..2068562	-	225	157692790	cmk	BPUM_2022	-	cytidylate kinase
1993	 37.16	-1	2068634..2068816	-	60	157692791	ypfB	BPUM_2023	-	hypothetical protein
1994	 40.59	0	2068880..2069527	-	215	157692792	ypfA	BPUM_2024	-	hypothetical protein
1995	 38.22	0	2069629..2070978	-	449	157692793	ypeB	BPUM_2025	-	hypothetical protein
1996	 42.65	0	2070995..2071906	-	303	157692794	sleB	BPUM_2026	-	spore cortex-lytic enzyme
1997	 39.73	0	2072035..2072691	-	218	157692795	ypdC	BPUM_2027	-	hypothetical protein
1998	 40.64	0	2072846..2073817	-	323	157692796	ypdA	BPUM_2028	-	thioredoxin reductase
1999	 42.82	0	2073940..2075214	-	424	157692797	gudB	BPUM_2029	-	glutamate dehydrogenase
2000	 39.86	0	2075409..2075990	-	193	157692798	ypbH	BPUM_2030	-	adaptor protein
2001	 41.95	0	2076156..2076944	-	262	157692799	ypbG	BPUM_2031	-	metallophosphoesterase
2002	 40.46	0	2077093..2077485	-	130	157692800	ypbF	BPUM_2032	-	hypothetical protein
2003	 39.76	0	2077550..2078311	-	253	157692801	ypbE	BPUM_2033	-	hypothetical protein
2004	 38.47	0	2078256..2078897	-	213	157692802	ypbD	BPUM_2034	-	hypothetical protein
2005	 42.48	0	2078894..2080402	-	502	157692803	recQ	BPUM_2035	-	ATP-dependent helicase RecQ
2006	 39.03	0	2080395..2081447	-	350	157692804	ypbB	BPUM_2036	-	hypothetical protein
2007	 42.57	0	2081715..2081963	+	82	157692805	fer	BPUM_2037	-	ferredoxin
2008	 37.63	0	2081998..2082579	-	193	157692806	ypaA	BPUM_2038	-	hypothetical protein
2009	 40.83	0	2083143..2084717	+	524	157692807	serA	BPUM_2039	-	D-3-phosphoglycerate dehydrogenase
2010	 44.81	+1	2084752..2085396	-	214	157692808	-	BPUM_2040	-	M23 family peptidase
2011	 40.33	0	2085497..2086540	-	347	157692809	rsiX	BPUM_2041	-	sigma X negative regulator
2012	 42.53	0	2086518..2087126	-	202	157692810	sigX	BPUM_2042	-	RNA polymerase sigma factor SigX
2013	 38.57	0	2087237..2087446	-	69	157692811	-	BPUM_2043	-	hypothetical protein
2014	 42.14	0	2087532..2089313	-	593	157692812	resE	BPUM_2044	-	sensor histidine kinase
2015	 41.77	0	2089310..2090032	-	240	157692813	resD	BPUM_2045	-	response regulator
2016	 42.66	0	2090120..2091298	-	392	157692814	resC	BPUM_2046	-	cytochrome c biogenesis protein ResC
2017	 41.31	0	2091282..2092961	-	559	157692815	resB	BPUM_2047	-	cytochrome c biogenesis protein ResB
2018	 40.49	0	2092963..2093493	-	176	157692816	resA	BPUM_2048	-	thiol-disulfide oxidoreductase
2019	 40.43	0	2093584..2094429	-	281	157692817	rluB	BPUM_2049	-	pseudouridylate synthase
2020	 45.62	+1	2094456..2094992	-	178	157692818	spmB	BPUM_2050	-	spore maturation protein B
2021	 44.39	0	2094997..2095584	-	195	157692819	spmA	BPUM_2051	-	spore maturation protein A
2022	 39.29	0	2095572..2096729	-	385	157692820	dacB	BPUM_2052	-	serine-type D-Ala-D-Ala carboxypeptidase
2023	 40.83	0	2096835..2097314	-	159	157692821	ypuI	BPUM_2053	-	hypothetical protein
2024	 41.75	0	2097428..2098021	-	197	157692822	scpB	BPUM_2054	-	segregation and condensation protein B
2025	 38.08	0	2098011..2098769	-	252	157692823	scpA	BPUM_2055	-	segregation and condensation protein A
2026	 47.31	+1	2098978..2099070	+	30	157692824	-	BPUM_2056	-	hypothetical protein
2027	 42.29	0	2099158..2099682	+	174	157692825	ypuF	BPUM_2057	-	hypothetical protein
2028	 41.81	0	2099707..2100060	-	117	157692826	ribT	BPUM_2058	-	reductase
2029	 41.51	0	2100174..2100638	-	154	157692827	ribH	BPUM_2059	-	riboflavin synthase subunit beta
2030	 44.18	0	2100666..2101292	-	208	157692828	ribA	BPUM_2060	-	bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase
2031	 42.40	0	2101304..2101954	-	216	157692829	ribE	BPUM_2061	-	riboflavin synthase subunit alpha
2032	 31.59	-2	2102455..2102799	-	114	157692830	ypuD	BPUM_2062	-	lipoprotein
2033	 35.47	-1	2103024..2103257	-	77	157692831	-	BPUM_2063	-	hypothetical protein
2034	 38.49	0	2103470..2104051	-	193	157692832	yezE	BPUM_2064	-	TetR family transcriptional regulator
2035	 46.19	+1	2104292..2105551	+	419	157692833	-	BPUM_2065	-	major facilitator transporter
2036	 43.15	0	2105596..2106033	-	145	157692834	ppiB	BPUM_2066	-	peptidylprolyl isomerase
2037	 41.22	0	2106339..2107238	+	299	157692835	ypuA	BPUM_2067	-	hypothetical protein
2038	 42.72	0	2107278..2108609	-	443	157692836	lysA	BPUM_2068	-	diaminopimelate decarboxylase
2039	 41.68	0	2108719..2110191	-	490	157692837	spoVAF	BPUM_2069	-	stage V sporulation protein AF
2040	 45.81	+1	2110145..2110753	-	202	157692838	spoVAEA	BPUM_2070	-	stage V sporulation protein AEA
2041	 43.30	0	2110760..2111110	-	116	157692839	spoVAEB	BPUM_2071	-	stage V sporulation protein AEB
2042	 44.84	+1	2111110..2112126	-	338	157692840	spoVAD	BPUM_2072	-	stage V sporulation protein AD
2043	 42.60	0	2112139..2112591	-	150	157692841	spoVAC	BPUM_2073	-	stage V sporulation protein AC
2044	 45.56	+1	2112611..2113027	-	138	157692842	spoVAB	BPUM_2074	-	stage V sporulation protein AB
2045	 39.61	0	2113017..2113637	-	206	157692843	spoVAA	BPUM_2075	-	stage V sporulation protein AA
2046	 40.89	0	2113752..2114519	-	255	157692844	sigF	BPUM_2076	-	sporulation sigma factor SigF
2047	 42.63	0	2114533..2114973	-	146	157692845	spoIIAB	BPUM_2077	-	anti-sigma F factor
2048	 41.24	0	2114970..2115323	-	117	157692846	spoIIAA	BPUM_2078	-	stage II sporulation anti-anti-sigma factor
2049	 40.81	0	2115485..2116687	-	400	157692847	dacF	BPUM_2079	-	serine-type D-Ala-D-Ala carboxypeptidase
2050	 43.30	0	2116797..2117609	-	270	157692848	punA	BPUM_2080	-	purine-nucleoside phosphorylase
2051	 42.03	0	2117621..2118805	-	394	157692849	drm	BPUM_2081	-	phosphopentomutase
2052	 41.30	0	2118957..2119847	-	296	157692850	xerD	BPUM_2082	-	site-specific tyrosine recombinase XerD
2053	 36.29	-1	2119854..2120090	-	78	157692851	-	BPUM_2083	-	hypothetical protein
2054	 40.40	0	2120199..2120651	-	150	157692852	fur	BPUM_2084	-	Fur family transcriptional regulator Fur
2055	 37.81	0	2120770..2121417	-	215	157692853	spoIIM	BPUM_2085	-	stage II sporulation protein M
2056	 37.39	-1	2122774..2122995	-	73	157692854	yqkK	BPUM_2087	-	hypothetical protein
2057	 41.72	0	2123064..2123516	-	150	157692855	yybD	BPUM_2088	-	acetyltransferase
2058	 44.42	0	2123503..2124684	-	393	157692856	yqxK	BPUM_2089	-	hypothetical protein
2059	 40.14	0	2124681..2125238	-	185	157692857	nudF	BPUM_2090	-	ADP-ribose diphosphatase
2060	 40.58	0	2125406..2126329	+	307	157692858	yqkF	BPUM_2091	-	Tas family dehydrogenase
2061	 32.56	-2	2126487..2126876	-	129	157692859	-	BPUM_2092	-	hypothetical protein
2062	 39.33	0	2127048..2127197	-	49	157692860	-	BPUM_2093	-	hypothetical protein
2063	 40.67	0	2127249..2127398	+	49	157692861	-	BPUM_2094	-	hypothetical protein
2064	 40.41	0	2127395..2128327	+	310	157692862	yqkD	BPUM_2095	-	serine peptidase
2065	 39.11	0	2128354..2129616	-	420	157692863	rapA3	BPUM_2096	-	aspartate phosphatase response regulator
2066	 37.50	0	2129922..2130161	-	79	157692864	yqkC	BPUM_2097	-	hypothetical protein
41.07	MEAN

3.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.