IslandPathversion 1.0

IslandPath Analysis: Bacillus pumilus SAFR-032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.07 STD DEV: 3.65
Bacillus pumilus SAFR-032, complete genome - 1..3704465
3681 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1831	 40.69	0	1923622..1924572	+	316	157692629	yocS	BPUM_1860	-	BASS family bile acid:sodium (Na+) symporter
1832	 45.58	+1	1924607..1925863	-	418	157692630	odhB	BPUM_1861	-	dihydrolipoamide acetyltransferase
1833	 41.73	0	1925878..1928712	-	944	157692631	odhA	BPUM_1862	-	alpha-ketoglutarate decarboxylase
1834	 41.05	0	1928938..1930854	-	638	157692632	yojO	BPUM_1863	-	regulator of nitric oxide reductase
1835	 43.12	0	1930866..1931744	-	292	157692633	-	BPUM_1864	-	nitric oxide reductase
1836	 44.28	0	1931834..1932454	-	206	157692634	yojM	BPUM_1865	-	copper/zinc (Cu/Zn) superoxide dismutase
1837	 39.67	0	1934235..1934849	-	204	157692635	-	BPUM_1867	-	hypothetical protein
1838	 42.66	0	1935113..1936474	+	453	157692636	-	BPUM_1868	-	multidrug efflux protein
1839	 42.34	0	1936520..1937185	-	221	157692637	-	BPUM_1869	-	hypothetical protein
1840	 42.45	0	1937204..1937554	-	116	157692638	-	BPUM_1870	-	hypothetical protein
1841	 39.72	0	1937551..1937832	-	93	157692639	-	BPUM_1871	-	hypothetical protein
1842	 39.07	0	1937911..1938816	-	301	157692640	rarD	BPUM_1872	-	DMT superfamily drug/metabolite transporter
1843	 39.45	0	1938912..1939385	+	157	157692641	yozR	BPUM_1873	-	hypothetical protein
1844	 50.23	+2	1939426..1939644	-	72	157692642	-	BPUM_1874	-	hypothetical protein
1845	 39.34	0	1939720..1940052	-	110	157692643	yodB	BPUM_1875	-	transcriptional regulator
1846	 39.32	0	1940192..1940809	+	205	157692644	-	BPUM_1876	-	nitroreductase
1847	 39.22	0	1941046..1941249	+	67	157692645	-	BPUM_1877	-	hypothetical protein
1848	 40.96	0	1941249..1942742	+	497	157692646	yodF	BPUM_1878	-	SSS family solute/sodium (Na+) symporter
1849	 32.13	-2	1942821..1943735	-	304	157692647	-	BPUM_1879	-	O-methyltransferase
1850	 40.76	0	1944081..1945466	-	461	157692648	ctpA	BPUM_1880	-	peptidase
1851	 43.78	0	1945618..1946316	+	232	157692649	-	BPUM_1881	-	hypothetical protein
1852	 48.02	+1	1946409..1946660	+	83	157692650	yodI	BPUM_1882	-	spore protein YodI
1853	 38.99	0	1946711..1947541	-	276	157692651	yodJ	BPUM_1883	-	serine-type D-Ala-D-Ala carboxypeptidase
1854	 41.95	0	1947610..1948305	-	231	157692652	deoD	BPUM_1884	-	purine-nucleoside phosphorylase
1855	 40.88	0	1948419..1948736	-	105	157692653	-	BPUM_1885	-	hypothetical protein
1856	 39.74	0	1948791..1949399	-	202	157692654	-	BPUM_1886	-	phosphatase
1857	 40.94	0	1949448..1949618	-	56	157692655	yozD	BPUM_1887	-	hypothetical protein
1858	 34.62	-1	1949639..1949872	+	77	157692656	-	BPUM_1888	-	hypothetical protein
1859	 38.77	0	1949869..1950549	-	226	157692657	yodN	BPUM_1889	-	hypothetical protein
1860	 36.00	-1	1950694..1950918	-	74	157692658	yozE	BPUM_1890	-	hypothetical protein
1861	 37.23	-1	1950997..1951278	-	93	157692659	-	BPUM_1891	-	hypothetical protein
1862	 42.97	0	1951281..1952681	-	466	157692660	kamA	BPUM_1892	-	lysine 2,3-aminomutase
1863	 41.54	0	1952799..1954175	-	458	157692661	-	BPUM_1893	-	transcriptional regulator
1864	 40.82	0	1954334..1955629	-	431	157692662	cgeD	BPUM_1894	-	spore maturation protein CgeD
1865	 39.25	0	1955647..1955967	-	106	157692663	cgeC	BPUM_1895	-	spore maturation protein CgeC
1866	 39.30	0	1956175..1956576	+	133	157692664	cgeA	BPUM_1896	-	spore maturation protein CgeA
1867	 41.23	0	1956592..1957554	+	320	157692665	cgeB	BPUM_1897	-	spore maturation protein CgeB
1868	 41.00	0	1957589..1958305	-	238	157692666	neuA	BPUM_1898	-	N-acylneuraminate cytidylyltransferase
1869	 41.11	0	1958549..1959577	+	342	157692667	capD	BPUM_1899	-	capsular polysaccharide biosynthesis protein D
1870	 42.36	0	1959628..1960059	-	143	157692668	msrB	BPUM_1900	-	methionine sulfoxide reductase B
1871	 40.97	0	1960056..1960592	-	178	157692669	msrA	BPUM_1901	-	methionine sulfoxide reductase A
1872	 37.27	-1	1960730..1961161	+	143	157692670	-	BPUM_1902	-	MarR family transcriptional regulator
1873	 42.15	0	1961216..1961476	+	86	157692671	-	BPUM_1903	-	hypothetical protein
1874	 42.49	0	1961597..1962262	+	221	157692672	-	BPUM_1904	-	hypothetical protein
1875	 32.83	-2	1962295..1962492	-	65	157692673	ypmT	BPUM_1905	-	hypothetical protein
1876	 37.57	0	1962515..1963081	-	188	157692674	ypmS	BPUM_1906	-	hypothetical protein
1877	 39.50	0	1963091..1963852	-	253	157692675	ypmR	BPUM_1907	-	lipase
1878	 38.92	0	1963922..1964512	-	196	157692676	ypmQ	BPUM_1908	-	electron transport protein
1879	 41.99	0	1964537..1965379	-	280	157692677	-	BPUM_1909	-	DegV family protein
1880	 42.06	0	1965567..1965818	-	83	157692678	ypmP	BPUM_1910	-	hypothetical protein
1881	 39.72	0	1965855..1967123	-	422	157692679	ilvA	BPUM_1911	-	threonine dehydratase
1882	 42.41	0	1967305..1968273	+	322	157692680	yplP	BPUM_1912	-	sigma L dependent transcriptional regulator
1883	 41.31	0	1968288..1968926	+	212	157692681	-	BPUM_1913	-	hemolysin III
1884	 40.54	0	1968961..1969584	-	207	157692682	ypkP	BPUM_1914	-	hypothetical protein
1885	 41.56	0	1969604..1970089	-	161	157692683	dfrA	BPUM_1915	-	dihydrofolate reductase
1886	 42.14	0	1970086..1970880	-	264	157692684	thyB	BPUM_1916	-	thymidylate synthase
1887	 39.63	0	1970984..1971523	-	179	157692685	-	BPUM_1917	-	phosphatidylglycerophosphatase A
1888	 42.23	0	1971530..1972147	-	205	157692686	ypjP	BPUM_1918	-	hypothetical protein
1889	 36.00	-1	1972301..1972375	+	24	157692687	-	BPUM_1919	-	hypothetical protein
1890	 43.73	0	1972579..1973367	-	262	157692688	ypiP	BPUM_1920	-	hypothetical protein
1891	 44.14	0	1973434..1973868	-	144	157692689	yphP	BPUM_1921	-	hypothetical protein
1892	 43.89	0	1973950..1975626	-	558	157692690	ilvD	BPUM_1922	-	dihydroxy-acid dehydratase
1893	 43.54	0	1975934..1977070	-	378	157692691	ypgR	BPUM_1923	-	hypothetical protein
1894	 46.90	+1	1977101..1977712	-	203	157692692	ypgQ	BPUM_1924	-	HD family metal dependent phosphohydrolase
1895	 37.06	-1	1977726..1978208	-	160	157692693	bsaA	BPUM_1925	-	glutathione peroxidase
1896	 42.78	0	1978283..1979965	-	560	157692694	fhs	BPUM_1926	-	formate--tetrahydrofolate ligase
1897	 36.85	-1	1980103..1981011	+	302	157692695	metA	BPUM_1927	-	homoserine O-succinyltransferase
1898	 35.59	-1	1981240..1982391	+	383	157692696	ugtP	BPUM_1928	-	diacylglycerol glucosyltransferase
1899	 40.88	0	1982425..1983126	-	233	157692697	-	BPUM_1929	-	hypothetical protein
1900	 38.81	0	1983385..1983585	+	66	157692698	cspD	BPUM_1930	-	cold shock protein
1901	 32.79	-2	1983631..1983813	-	60	157692699	degR	BPUM_1931	-	regulatory protein DegR
1902	 33.33	-2	1983983..1984165	-	60	157692700	ypeQ	BPUM_1932	-	hypothetical protein
1903	 40.03	0	1984167..1984838	-	223	157692701	ypeP	BPUM_1933	-	hypothetical protein
1904	 40.29	0	1984933..1985622	+	229	157692702	ypdP	BPUM_1934	-	hypothetical protein
1905	 40.40	0	1985624..1986019	+	131	157692703	rnhA	BPUM_1935	-	ribonuclease H
1906	 38.10	0	1986064..1986189	+	41	157692704	sspL	BPUM_1936	-	small acid-soluble spore protein L
1907	 40.43	0	1986206..1987093	-	295	157692705	ypcP	BPUM_1937	-	5'-3' exonuclease
1908	 44.70	0	1987368..1987631	-	87	157692706	ypbS	BPUM_1938	-	hypothetical protein
1909	 40.67	0	1987673..1991272	-	1199	157692707	-	BPUM_1939	-	hypothetical protein
1910	 37.84	0	1991577..1992086	-	169	157692708	ypbQ	BPUM_1940	-	isoprenylcysteine carboxyl methyltransferase
1911	 43.78	0	1992083..1993183	-	366	157692709	bcsA	BPUM_1941	-	naringenin-chalcone synthase
1912	 38.93	0	1993753..1994556	+	267	157692710	yheN2	BPUM_1942	-	polysaccharide deacetylase
1913	 43.26	0	1994748..1996067	-	439	157692711	pbuX	BPUM_1943	-	NCS2 family uracil:xanthine symporter-2
1914	 40.68	0	1996064..1996648	-	194	157692712	xpt	BPUM_1944	-	xanthine phosphoribosyltransferase
1915	 39.11	0	1997002..1998507	-	501	157692713	ypwA	BPUM_1945	-	M32 family carboxypeptidase
1916	 40.71	0	1998635..2000572	-	645	157692714	ypvA	BPUM_1946	-	ATP-dependent helicase
1917	 38.97	0	2000634..2000846	+	70	157692715	-	BPUM_1947	-	hypothetical protein
1918	 39.20	0	2000974..2001774	-	266	157692716	-	BPUM_1948	-	integrase
1919	 41.44	0	2001792..2002124	-	110	157692717	-	BPUM_1949	-	transposase
1920	 43.72	0	2002240..2003394	-	384	157692718	-	BPUM_1950	-	site-specific DNA-methyltransferase (adenine-specific)
1921	 33.66	-2	2003949..2004254	-	101	157692719	ypsB	BPUM_1951	-	hypothetical protein
1922	 41.39	0	2004312..2004944	-	210	157692720	ypsA	BPUM_1952	-	hypothetical protein
1923	 40.79	0	2005474..2006721	-	415	157692721	yprB	BPUM_1953	-	hypothetical protein
1924	 43.35	0	2006745..2008991	-	748	157692722	yprA	BPUM_1954	-	ATP-dependent helicase
1925	 44.35	0	2009236..2010270	+	344	157692723	yqiG	BPUM_1955	-	FMN reductase
1926	 40.63	0	2010319..2010825	-	168	157692724	ypqE	BPUM_1956	-	PTS family glucose/sucrose porter component IIA
1927	 41.90	0	2010994..2011413	+	139	157692725	-	BPUM_1957	-	hypothetical protein
1928	 44.81	+1	2011434..2011886	-	150	157692726	yppG	BPUM_1958	-	hypothetical protein
1929	 39.78	0	2011993..2012364	-	123	157692727	yppE	BPUM_1959	-	hypothetical protein
1930	 41.43	0	2012436..2012756	+	106	157692728	-	BPUM_1960	-	hypothetical protein
41.07	MEAN

3.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.