IslandPathversion 1.0

IslandPath Analysis: Bacillus pumilus SAFR-032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.07 STD DEV: 3.65
Bacillus pumilus SAFR-032, complete genome - 1..3704465
3681 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1530	 41.11	0	1597604..1598143	+	179	157692328	ylxL	BPUM_1547	-	hypothetical protein
1531	 40.82	0	1599124..1600005	+	293	157692329	tsf	BPUM_1549	-	elongation factor Ts
1532	 42.81	0	1600210..1600863	+	217	157692330	pyrH	BPUM_1550	-	UMP kinase
1533	 37.99	0	1600865..1601422	+	185	157692331	frr	BPUM_1551	-	peptide chain release factor RF4
1534	 42.78	0	1601552..1602334	+	260	157692332	uppS	BPUM_1552	-	di-trans,poly-cis-decaprenylcistransferase
1535	 41.20	0	1602443..1603141	+	232	157692333	cdsA	BPUM_1553	-	phosphatidate cytidylyltransferase
1536	 41.84	0	1603180..1604331	+	383	157692334	dxr	BPUM_1554	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1537	 41.15	0	1604338..1605603	+	421	157692335	yluC	BPUM_1555	-	M50 family peptidase
1538	 43.23	0	1605683..1607380	+	565	157692336	proS1	BPUM_1556	-	prolyl-tRNA synthetase
1539	 41.89	0	1607456..1611769	+	1437	157692337	polC	BPUM_1557	-	DNA polymerase III PolC
1540	 44.19	0	1612188..1614038	+	616	157692338	bglC	BPUM_1558	-	cellulase
1541	 44.87	+1	1614069..1616174	+	701	157692339	celB	BPUM_1559	-	cellulose 1,4-beta-cellobiosidase
1542	 41.22	0	1616259..1617488	+	409	157692340	-	BPUM_1560	-	glycoside hydrolase
1543	 43.21	0	1617507..1618640	+	377	157692341	-	BPUM_1561	-	mannan endo-1,4-beta-mannosidase
1544	 39.45	0	1618879..1619352	+	157	157692342	ylxS	BPUM_1562	-	hypothetical protein
1545	 41.31	0	1619385..1620500	+	371	157692343	nusA	BPUM_1563	-	transcription elongation factor NusA
1546	 40.00	0	1620507..1620806	+	99	157692344	ylxR	BPUM_1564	-	hypothetical protein
1547	 42.90	0	1620793..1621095	+	100	157692345	ylxQ	BPUM_1565	-	hypothetical protein
1548	 41.11	0	1621115..1623235	+	706	157692346	infB	BPUM_1566	-	translation initiation factor IF-2
1549	 41.22	0	1623232..1623510	+	92	157692347	-	BPUM_1567	-	hypothetical protein
1550	 42.17	0	1623528..1623878	+	116	157692348	rbfA	BPUM_1568	-	ribosome-binding factor A
1551	 41.61	0	1623947..1624876	+	309	157692349	truB	BPUM_1569	-	tRNA pseudouridine 55 synthase
1552	 42.55	0	1624895..1625860	+	321	157692350	ribC	BPUM_1570	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1553	 38.52	0	1626001..1626270	+	89	157692351	rpsO	BPUM_1571	-	30S ribosomal protein S15
1554	 41.64	0	1626451..1628568	+	705	157692352	pnpA	BPUM_1572	-	polynucleotide phosphorylase/polyadenylase
1555	 39.52	0	1628683..1629636	+	317	157692353	ylxY	BPUM_1573	-	polysaccharide deacetylase
1556	 41.71	0	1629670..1630899	+	409	157692354	mlpA	BPUM_1574	-	M16B subfamily peptidase
1557	 40.69	0	1630973..1631896	+	307	157692355	aph	BPUM_1575	-	kanamycin kinase
1558	 46.15	+1	1631967..1632239	+	90	157692356	ymxH	BPUM_1576	-	hypothetical protein
1559	 45.63	+1	1632363..1633265	+	300	157692357	spoVFA	BPUM_1577	-	dipicolinate synthase subunit A
1560	 42.76	0	1633262..1633855	+	197	157692358	spoVFB	BPUM_1578	-	dipicolinate synthase subunit B
1561	 42.06	0	1633995..1635014	+	339	157692359	asd	BPUM_1579	-	aspartate-semialdehyde dehydrogenase
1562	 45.43	+1	1635107..1636321	+	404	157692360	dapG	BPUM_1580	-	aspartate kinase I
1563	 42.45	0	1636352..1637218	+	288	157692361	dapA2	BPUM_1581	-	dihydrodipicolinate synthase
1564	 40.65	0	1637390..1639057	+	555	157692362	-	BPUM_1582	-	metallo beta lactamase
1565	 43.07	0	1639161..1639910	+	249	157692363	clpP1	BPUM_1583	-	endopeptidase ClpP
1566	 40.51	0	1639907..1640143	+	78	157692364	-	BPUM_1584	-	hypothetical protein
1567	 43.45	0	1640254..1642626	+	790	157692365	spoIIIE	BPUM_1585	-	stage III sporulation DNA translocase E
1568	 40.77	0	1642792..1643517	+	241	157692366	ymfC	BPUM_1586	-	GntR family transcriptional regulator
1569	 38.34	0	1645167..1648283	+	1038	157692367	-	BPUM_1587	-	resistance-nodulation-cell division acriflavin:proton (H+) antiporter
1570	 41.37	0	1648429..1649709	+	426	157692368	-	BPUM_1588	-	M16 family metallopeptidase
1571	 38.90	0	1649706..1650998	+	430	157692369	-	BPUM_1589	-	M16C subfamily metallopeptidase
1572	 37.74	0	1651149..1651625	+	158	157692370	-	BPUM_1590	-	MarR family transcriptional regulator
1573	 39.36	0	1651603..1654722	+	1039	157692371	ydgH	BPUM_1591	-	resistance-nodulation-cell division acriflavin:proton (H+) antiporter
1574	 44.86	+1	1654754..1655482	+	242	157692372	ymfI	BPUM_1592	-	3-ketoacyl-(acyl-carrier-protein) reductase
1575	 39.92	0	1655556..1655813	+	85	157692373	ymfJ	BPUM_1593	-	hypothetical protein
1576	 39.77	0	1655945..1656736	+	263	157692374	-	BPUM_1594	-	hypothetical protein
1577	 41.59	0	1656751..1657671	+	306	157692375	ymfM	BPUM_1595	-	transcription regulation protein
1578	 42.78	0	1657747..1658328	+	193	157692376	pgsA	BPUM_1596	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1579	 45.08	+1	1658345..1659595	+	416	157692377	cinA	BPUM_1597	-	competence damage-inducible protein A
1580	 42.46	0	1659772..1660812	+	346	157692378	recA	BPUM_1598	-	recombination protein A
1581	 42.87	0	1661118..1662680	+	520	157692379	ymdA	BPUM_1599	-	phosphodiesterase
1582	 40.88	0	1662768..1663562	+	264	157692380	ymdB	BPUM_1600	-	hypothetical protein
1583	 45.98	+1	1663764..1664024	+	86	157692381	spoVS	BPUM_1601	-	stage V sporulation protein S
1584	 41.22	0	1664227..1667271	+	1014	157692382	yerP	BPUM_1602	-	resistance-nodulation-cell division acriflavin:proton (H+) antiporter
1585	 44.51	0	1667446..1668510	+	354	157692383	tdh	BPUM_1603	-	L-threonine 3-dehydrogenase
1586	 43.65	0	1668507..1669688	+	393	157692384	kbl	BPUM_1604	-	2-amino-3-ketobutyrate coenzyme A ligase
1587	 41.32	0	1669847..1671373	+	508	157692385	ymcB	BPUM_1605	-	tRNA 2-methylthioadenine synthetase
1588	 37.24	-1	1671375..1671809	+	144	157692386	ymcA	BPUM_1606	-	hypothetical protein
1589	 39.38	0	1672261..1672806	+	181	157692387	cotE	BPUM_1607	-	outer spore coat protein E
1590	 41.13	0	1672931..1675507	+	858	157692388	mutS1	BPUM_1608	-	DNA mismatch repair protein
1591	 43.59	0	1675528..1677429	+	633	157692389	mutL	BPUM_1609	-	DNA mismatch repair protein
1592	 44.19	0	1677505..1678038	-	177	157692390	yuaB	BPUM_1610	-	hypothetical protein
1593	 39.17	0	1678164..1678574	-	136	157692391	-	BPUM_1611	-	hypothetical protein
1594	 38.17	0	1678682..1678867	-	61	157692392	-	BPUM_1612	-	hypothetical protein
1595	 38.57	0	1679131..1679607	+	158	157692393	carD	BPUM_1613	-	transcription factor CarD
1596	 38.27	0	1679919..1680668	+	249	157692394	ymaC	BPUM_1614	-	phage-related protein YmaC
1597	 38.29	0	1680834..1681982	+	382	157692395	-	BPUM_1615	-	response regulator
1598	 43.44	0	1682075..1683400	-	441	157692396	aprX	BPUM_1616	-	protease
1599	 43.67	0	1683986..1684720	+	244	157692397	-	BPUM_1617	-	hypothetical protein
1600	 44.44	0	1684798..1685247	+	149	157692398	ymaD	BPUM_1618	-	osmotic stress regulator
1601	 40.65	0	1685294..1685662	-	122	157692399	ebrB	BPUM_1619	-	DMT superfamily drug/metabolite transporter
1602	 42.77	0	1685676..1685993	-	105	157692400	ebrA	BPUM_1620	-	DMT superfamily drug/metabolite transporter
1603	 41.21	0	1685993..1686538	-	181	157692401	-	BPUM_1621	-	TetR family transcriptional regulator
1604	 48.41	+2	1686651..1686902	-	83	157692402	ymaG	BPUM_1622	-	spore protein YmaG
1605	 45.52	+1	1687007..1687408	+	133	157692403	ymaF	BPUM_1623	-	hypothetical protein
1606	 41.67	0	1687439..1688434	+	331	157692404	miaA	BPUM_1624	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1607	 36.49	-1	1688460..1688681	+	73	157692405	ymaH	BPUM_1625	-	RNA-binding protein Hfq
1608	 37.88	0	1688839..1689168	+	109	157692406	ymzC	BPUM_1626	-	hypothetical protein
1609	 37.09	-1	1689248..1689460	+	70	157692407	ymzA	BPUM_1627	-	hypothetical protein
1610	 37.34	-1	1689721..1690119	+	132	157692408	nrdI	BPUM_1628	-	ribonucleotide reductase stimulatory protein
1611	 39.37	0	1690079..1692181	+	700	157692409	nrdE	BPUM_1629	-	ribonucleotide-diphosphate reductase subunit alpha
1612	 37.82	0	1692199..1693179	+	326	157692410	nrdF	BPUM_1630	-	ribonucleotide-diphosphate reductase subunit beta
1613	 41.10	0	1693264..1693881	+	205	157692411	ymaB	BPUM_1631	-	MutT/NUDIX family hydrolase
1614	 45.06	+1	1693948..1694706	-	252	157692412	cwlC	BPUM_1632	-	N-acetylmuramoyl-L-alanine amidase
1615	 40.52	0	1695027..1695986	+	319	157692413	spoVK	BPUM_1633	-	stage V sporulation protein K
1616	 42.04	0	1696108..1697370	+	420	157692414	-	BPUM_1634	-	HflX family GTP-binding protein
1617	 43.40	0	1697389..1698669	+	426	157692415	ynbB	BPUM_1635	-	aluminum resistance protein
1618	 41.36	0	1698760..1699170	+	136	157692416	glnR	BPUM_1636	-	glutamine synthetase transcriptional repressor
1619	 42.02	0	1699230..1700564	+	444	157692417	glnA	BPUM_1637	-	glutamate--ammonia ligase
1620	 43.79	0	1701045..1701197	+	50	157692418	-	BPUM_1638	-	hypothetical protein
1621	 32.77	-2	1701404..1702471	+	355	157692419	-	BPUM_1639	-	patatin phospholipase
1622	 27.46	-2	1703198..1703776	+	192	157692420	-	BPUM_1640	-	hypothetical protein
1623	 40.20	0	1703943..1704146	+	67	157692421	-	BPUM_1641	-	hypothetical protein
1624	 44.87	+1	1704147..1704380	+	77	157692422	-	BPUM_1642	-	hypothetical protein
1625	 37.33	-1	1704344..1704493	+	49	157692423	-	BPUM_1643	-	hypothetical protein
1626	 32.09	-2	1705102..1705584	+	160	157692424	yjcP	BPUM_1645	-	hypothetical protein
1627	 31.88	-2	1705664..1705870	+	68	157692425	-	BPUM_1646	-	hypothetical protein
1628	 27.54	-2	1707586..1708482	+	298	157692426	yobJ	BPUM_1649	-	membrane protein
1629	 36.92	-1	1708517..1708795	+	92	157692427	-	BPUM_1650	-	hypothetical protein
41.07	MEAN

3.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.