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Bacillus pumilus SAFR-032, complete genome - 1..3704465 3681 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1463 35.80 -1 1536437..1536517 + 26 157692261 spoVM BPUM_1480 - stage V sporulation protein M 1464 41.27 0 1536587..1536775 - 62 157692262 rpmB BPUM_1481 - 50S ribosomal protein L28 1465 41.60 0 1537047..1537409 + 120 157692263 - BPUM_1482 - hypothetical protein 1466 42.68 0 1537425..1539104 + 559 157692264 - BPUM_1483 - glycerone kinase 1467 42.53 0 1539254..1539916 + 220 157692265 sdaAB BPUM_1484 - L-serine ammonia-lyase beta chain 1468 46.95 +1 1539937..1540839 + 300 157692266 sdaAA BPUM_1485 - L-serine ammonia-lyase alpha chain 1469 44.56 0 1540817..1542865 + 682 157692267 recG BPUM_1486 - DNA helicase RecG 1470 40.04 0 1542978..1543544 + 188 157692268 ylpC BPUM_1487 - fatty acid biosynthesis transcriptional regulator 1471 42.24 0 1543560..1544558 + 332 157692269 plsX BPUM_1488 - putative glycerol-3-phosphate acyltransferase PlsX 1472 42.75 0 1544574..1545518 + 314 157692270 fabD BPUM_1489 - [Acyl-carrier-protein] S-malonyltransferase 1473 41.94 0 1545518..1546261 + 247 157692271 fabG1 BPUM_1490 - 3-oxoacyl-[acyl-carrier-protein] reductase 1474 40.17 0 1546343..1546576 + 77 157692272 acpP BPUM_1491 - acyl carrier protein 1475 41.26 0 1546761..1547504 + 247 157692273 rnc BPUM_1492 - ribonuclease III 1476 41.95 0 1547610..1551170 + 1186 157692274 smc BPUM_1493 - chromosome segregation protein Smc 1477 41.74 0 1551193..1552179 + 328 157692275 ftsY BPUM_1494 - signal recognition particle-docking protein 1478 37.24 -1 1552322..1552654 + 110 157692276 ylxM BPUM_1495 - hypothetical protein 1479 43.18 0 1552668..1554008 + 446 157692277 ffh BPUM_1496 - signal recognition particle protein Ffh 1480 37.73 0 1554114..1554386 + 90 157692278 rpsP BPUM_1497 - 30S ribosomal protein S16 1481 41.87 0 1554386..1554631 + 81 157692279 - BPUM_1498 - RNA binding protein 1482 39.53 0 1554735..1555121 + 128 157692280 - BPUM_1499 - hypothetical protein 1483 39.81 0 1555130..1555654 + 174 157692281 rimM BPUM_1500 - 16S rRNA processing protein 1484 43.13 0 1555651..1556385 + 244 157692282 trmD BPUM_1501 - tRNA (guanine-N(1)-)-methyltransferase 1485 43.97 0 1556523..1556870 + 115 157692283 rplS BPUM_1502 - 50S ribosomal protein L19 1486 42.99 0 1556959..1557807 + 282 157692284 ylqF BPUM_1503 - ribosomal biogenesis GTPase 1487 42.48 0 1557883..1558647 + 254 157692285 rnhB BPUM_1504 - ribonuclease HII 1488 42.66 0 1558675..1560411 + 578 157692286 - BPUM_1505 - hypothetical protein 1489 40.58 0 1560408..1560683 + 91 157692287 ylqH BPUM_1506 - flagellar biosynthesis protein FlhB 1490 40.48 0 1560860..1562020 + 386 157692288 sucC BPUM_1507 - succinyl-CoA synthetase subunit beta 1491 41.42 0 1562043..1562945 + 300 157692289 sucD BPUM_1508 - succinyl-CoA synthetase subunit alpha 1492 39.42 0 1563009..1563911 + 300 157692290 smf BPUM_1509 - Smf family DNA processing protein 1493 41.38 0 1564105..1566180 + 691 157692291 topA BPUM_1510 - DNA topoisomerase I 1494 41.30 0 1566251..1567555 + 434 157692292 gidA1 BPUM_1511 - tRNA (uracil-5-)-methyltransferase Gid 1495 39.98 0 1567618..1568535 + 305 157692293 xerC BPUM_1512 - site-specific tyrosine recombinase XerC 1496 46.52 +1 1568550..1569095 + 181 157692294 clpQ BPUM_1513 - ATP-dependent protease peptidase subunit 1497 40.83 0 1569112..1570512 + 466 157692295 clpY BPUM_1514 - ATP-dependent protease ATP-binding subunit 1498 38.72 0 1570547..1571326 + 259 157692296 codY BPUM_1515 - transcriptional repressor CodY 1499 35.90 -1 1571613..1572002 + 129 157692297 flgB BPUM_1516 - flagellar basal body rod protein FlgB 1500 40.40 0 1572002..1572454 + 150 157692298 flgC BPUM_1517 - flagellar basal body rod protein FlgC 1501 42.45 0 1572466..1572783 + 105 157692299 fliE BPUM_1518 - flagellar hook-basal body protein FliE 1502 39.30 0 1572833..1574425 + 530 157692300 fliF BPUM_1519 - flagellar MS-ring protein 1503 43.36 0 1574437..1575453 + 338 157692301 fliG BPUM_1520 - flagellar motor switch protein G 1504 40.39 0 1575446..1576210 + 254 157692302 fliH BPUM_1521 - flagellar assembly protein H 1505 44.57 0 1576207..1577523 + 438 157692303 fliI BPUM_1522 - flagellum-specific ATP synthase 1506 33.33 -2 1577520..1577975 + 151 157692304 fliJ BPUM_1523 - flagellar biosynthesis chaperone 1507 37.20 -1 1577988..1578686 + 232 157692305 ylxF BPUM_1524 - hypothetical protein 1508 43.39 0 1578687..1580018 + 443 157692306 fliK BPUM_1525 - flagellar hook-length control protein 1509 38.70 0 1580018..1580464 + 148 157692307 flgD BPUM_1526 - flagellar basal body rod modification protein 1510 40.40 0 1580482..1581273 + 263 157692308 flgG BPUM_1527 - flagellar basal body rod protein FlgG 1511 34.72 -1 1581311..1581526 + 71 157692309 - BPUM_1528 - hypothetical protein 1512 36.13 -1 1581523..1581951 + 142 157692310 fliL BPUM_1529 - flagellar basal body-associated protein FliL 1513 40.84 0 1581984..1582982 + 332 157692311 fliM BPUM_1530 - flagellar motor switch protein FliM 1514 43.47 0 1582972..1584096 + 374 157692312 fliY BPUM_1531 - flagellar motor switch protein 1515 39.67 0 1584124..1584486 + 120 157692313 cheY BPUM_1532 - response regulator CheY 1516 39.09 0 1584505..1585164 + 219 157692314 fliZ BPUM_1533 - flagella biosynthesis protein FliZ 1517 36.79 -1 1585157..1585822 + 221 157692315 fliP BPUM_1534 - flagellar biosynthesis protein FliP 1518 43.33 0 1585839..1586108 + 89 157692316 fliQ BPUM_1535 - flagellar biosynthesis protein FliQ 1519 40.77 0 1586115..1586894 + 259 157692317 fliR BPUM_1536 - flagellar biosynthesis protein FliR 1520 38.93 0 1586891..1587979 + 362 157692318 flhB BPUM_1537 - flagellar biosynthesis protein FlhB 1521 42.97 0 1588009..1590042 + 677 157692319 flhA BPUM_1538 - flagellar biosynthesis protein FlhA 1522 41.76 0 1590042..1591157 + 371 157692320 flhF BPUM_1539 - flagellar biosynthesis regulator FlhF 1523 41.83 0 1591154..1592059 + 301 157692321 ylxH BPUM_1540 - ATPase 1524 44.41 0 1592056..1593129 + 357 157692322 cheB BPUM_1541 - chemotaxis-specific methylesterase 1525 41.41 0 1593135..1595165 + 676 157692323 cheA BPUM_1542 - sensor histidine kinase CheA 1526 40.69 0 1595190..1595651 + 153 157692324 cheW BPUM_1543 - chemotaxis protein CheW 1527 40.99 0 1595664..1596290 + 208 157692325 cheC BPUM_1544 - chemotaxis protein CheC 1528 43.71 0 1596290..1596790 + 166 157692326 cheD BPUM_1545 - chemoreceptor glutamine deamidase CheD 1529 43.10 0 1596815..1597582 + 255 157692327 sigD BPUM_1546 - RNA polymerase sigma factor SigD 1530 41.11 0 1597604..1598143 + 179 157692328 ylxL BPUM_1547 - hypothetical protein 1531 40.82 0 1599124..1600005 + 293 157692329 tsf BPUM_1549 - elongation factor Ts 1532 42.81 0 1600210..1600863 + 217 157692330 pyrH BPUM_1550 - UMP kinase 1533 37.99 0 1600865..1601422 + 185 157692331 frr BPUM_1551 - peptide chain release factor RF4 1534 42.78 0 1601552..1602334 + 260 157692332 uppS BPUM_1552 - di-trans,poly-cis-decaprenylcistransferase 1535 41.20 0 1602443..1603141 + 232 157692333 cdsA BPUM_1553 - phosphatidate cytidylyltransferase 1536 41.84 0 1603180..1604331 + 383 157692334 dxr BPUM_1554 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1537 41.15 0 1604338..1605603 + 421 157692335 yluC BPUM_1555 - M50 family peptidase 1538 43.23 0 1605683..1607380 + 565 157692336 proS1 BPUM_1556 - prolyl-tRNA synthetase 1539 41.89 0 1607456..1611769 + 1437 157692337 polC BPUM_1557 - DNA polymerase III PolC 1540 44.19 0 1612188..1614038 + 616 157692338 bglC BPUM_1558 - cellulase 1541 44.87 +1 1614069..1616174 + 701 157692339 celB BPUM_1559 - cellulose 1,4-beta-cellobiosidase 1542 41.22 0 1616259..1617488 + 409 157692340 - BPUM_1560 - glycoside hydrolase 1543 43.21 0 1617507..1618640 + 377 157692341 - BPUM_1561 - mannan endo-1,4-beta-mannosidase 1544 39.45 0 1618879..1619352 + 157 157692342 ylxS BPUM_1562 - hypothetical protein 1545 41.31 0 1619385..1620500 + 371 157692343 nusA BPUM_1563 - transcription elongation factor NusA 1546 40.00 0 1620507..1620806 + 99 157692344 ylxR BPUM_1564 - hypothetical protein 1547 42.90 0 1620793..1621095 + 100 157692345 ylxQ BPUM_1565 - hypothetical protein 1548 41.11 0 1621115..1623235 + 706 157692346 infB BPUM_1566 - translation initiation factor IF-2 1549 41.22 0 1623232..1623510 + 92 157692347 - BPUM_1567 - hypothetical protein 1550 42.17 0 1623528..1623878 + 116 157692348 rbfA BPUM_1568 - ribosome-binding factor A 1551 41.61 0 1623947..1624876 + 309 157692349 truB BPUM_1569 - tRNA pseudouridine 55 synthase 1552 42.55 0 1624895..1625860 + 321 157692350 ribC BPUM_1570 - bifunctional riboflavin kinase/FMN adenylyltransferase 1553 38.52 0 1626001..1626270 + 89 157692351 rpsO BPUM_1571 - 30S ribosomal protein S15 1554 41.64 0 1626451..1628568 + 705 157692352 pnpA BPUM_1572 - polynucleotide phosphorylase/polyadenylase 1555 39.52 0 1628683..1629636 + 317 157692353 ylxY BPUM_1573 - polysaccharide deacetylase 1556 41.71 0 1629670..1630899 + 409 157692354 mlpA BPUM_1574 - M16B subfamily peptidase 1557 40.69 0 1630973..1631896 + 307 157692355 aph BPUM_1575 - kanamycin kinase 1558 46.15 +1 1631967..1632239 + 90 157692356 ymxH BPUM_1576 - hypothetical protein 1559 45.63 +1 1632363..1633265 + 300 157692357 spoVFA BPUM_1577 - dipicolinate synthase subunit A 1560 42.76 0 1633262..1633855 + 197 157692358 spoVFB BPUM_1578 - dipicolinate synthase subunit B 1561 42.06 0 1633995..1635014 + 339 157692359 asd BPUM_1579 - aspartate-semialdehyde dehydrogenase 1562 45.43 +1 1635107..1636321 + 404 157692360 dapG BPUM_1580 - aspartate kinase I 41.07 MEAN 3.65 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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