IslandPathversion 1.0

IslandPath Analysis: Bacillus pumilus SAFR-032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.07 STD DEV: 3.65
Bacillus pumilus SAFR-032, complete genome - 1..3704465
3681 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1094	 40.48	0	1191273..1191440	+	55	157691892	-	BPUM_1110	-	hypothetical protein
1095	 41.99	0	1191518..1191748	+	76	157691893	-	BPUM_1111	-	hypothetical protein
1096	 46.03	+1	1191833..1191958	+	41	157691894	yosA	BPUM_1112	-	hypothetical protein
1097	 33.72	-2	1192097..1192354	+	85	157691895	spoVIF	BPUM_1113	-	spore coat assembly protein YjcC
1098	 43.67	0	1192371..1194683	-	770	157691896	yjcD	BPUM_1114	-	UvrD Rep family helicase
1099	 41.00	0	1194807..1195067	+	86	157691897	-	BPUM_1115	-	hypothetical protein
1100	 41.15	0	1195148..1195582	-	144	157691898	yjcF	BPUM_1116	-	acetyltransferase
1101	 37.98	0	1195589..1196104	-	171	157691899	ligT	BPUM_1117	-	hypothetical protein
1102	 39.54	0	1196157..1196897	-	246	157691900	yjcH	BPUM_1118	-	esterase
1103	 44.59	0	1197320..1198438	+	372	157691901	yjcI	BPUM_1119	-	cystathionine gamma-synthase
1104	 45.97	+1	1198435..1199613	+	392	157691902	yjcJ	BPUM_1120	-	cystathionine beta-lyase
1105	 33.69	-2	1200154..1200990	+	278	157691903	-	BPUM_1121	-	hypothetical protein
1106	 34.51	-1	1201258..1201596	-	112	157691904	-	BPUM_1122	-	transcriptional regulator
1107	 38.54	0	1201702..1202085	+	127	157691905	-	BPUM_1123	-	hypothetical protein
1108	 43.39	0	1202320..1202508	+	62	157691906	-	BPUM_1124	-	hypothetical protein
1109	 34.29	-1	1202715..1203653	-	312	157691907	accA1	BPUM_1125	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1110	 30.87	-2	1203686..1204132	-	148	157691908	-	BPUM_1126	-	MarR family transcriptional regulator
1111	 34.60	-1	1205014..1205409	-	131	157691909	-	BPUM_1127	-	hypothetical protein
1112	 29.10	-2	1206033..1206221	-	62	157691910	-	BPUM_1128	-	hypothetical protein
1113	 31.67	-2	1206347..1206766	-	139	157691911	-	BPUM_1129	-	hypothetical protein
1114	 39.95	0	1206948..1207778	+	276	157691912	-	BPUM_1130	-	acetylxylan esterase
1115	 34.24	-1	1207866..1208528	+	220	157691913	cat	BPUM_1131	-	chloramphenicol O-acetyltransferase
1116	 33.96	-1	1208729..1209847	+	372	157691914	rapH	BPUM_1132	-	aspartate phosphatase response regulator H
1117	 27.59	-2	1209837..1210010	+	57	157691915	phrH	BPUM_1133	-	RapH phosphatase inhibitor
1118	 38.53	0	1210120..1210947	+	275	157691916	-	BPUM_1134	-	hypothetical protein
1119	 35.50	-1	1210989..1211864	-	291	157691917	-	BPUM_1135	-	LysR family transcriptional regulator
1120	 39.77	0	1211888..1212586	-	232	157691918	racX	BPUM_1136	-	aspartate racemase
1121	 39.36	0	1212689..1213252	-	187	157691919	-	BPUM_1137	-	acetyltransferase
1122	 43.03	0	1213262..1214158	-	298	157691920	-	BPUM_1138	-	LysR family transcriptional regulator
1123	 44.07	0	1214286..1215440	+	384	157691921	-	BPUM_1139	-	major facilitator transporter
1124	 40.95	0	1215482..1215901	+	139	157691922	-	BPUM_1140	-	GNAT family acetyltransferase
1125	 34.66	-1	1216031..1217164	+	377	157691923	rapA1	BPUM_1141	-	aspartate phosphatase response regulator
1126	 34.78	-1	1217154..1217291	+	45	157691924	phrA1	BPUM_1142	-	RapA phosphatase inhibitor PhrA1
1127	 31.27	-2	1217533..1217823	+	96	157691925	-	BPUM_1143	-	hypothetical protein
1128	 34.00	-1	1217998..1218447	+	149	157691926	yosT	BPUM_1144	-	DNA gyrase inhibitor
1129	 38.10	0	1218547..1219176	+	209	157691927	-	BPUM_1145	-	hypothetical protein
1130	 47.29	+1	1219341..1220522	+	393	157691928	alr2	BPUM_1146	-	alanine racemase
1131	 39.62	0	1220604..1221716	-	370	157691929	-	BPUM_1147	-	alcohol dehydrogenase
1132	 35.28	-1	1221929..1222543	+	204	157691930	-	BPUM_1148	-	TetR family transcriptional regulator
1133	 40.86	0	1222940..1223842	+	300	157691931	hag2	BPUM_1149	-	flagellin
1134	 42.59	0	1224113..1225030	+	305	157691932	hag3	BPUM_1150	-	flagellin
1135	 40.95	0	1225229..1226134	+	301	157691933	hag4	BPUM_1151	-	flagellin
1136	 42.78	0	1226421..1227320	+	299	157691934	hag5	BPUM_1152	-	flagellin
1137	 43.26	0	1227353..1228813	-	486	157691935	-	BPUM_1153	-	FAD dependent dehydrogenase
1138	 39.30	0	1229059..1229862	+	267	157691936	-	BPUM_1154	-	chemotaxis sensory transducer
1139	 39.90	0	1229899..1230294	-	131	157691937	-	BPUM_1155	-	hypothetical protein
1140	 40.06	0	1230514..1231137	+	207	157691938	-	BPUM_1156	-	hypothetical protein
1141	 40.62	0	1231154..1231702	-	182	157691939	xkdA	BPUM_1157	-	hypothetical protein
1142	 43.22	0	1232013..1232912	+	299	157691940	xlyA	BPUM_1158	-	N-acetylmuramoyl-L-alanine amidase
1143	 37.43	0	1233133..1233303	-	56	157691941	spoIISB	BPUM_1159	-	stage II sporulation membrane protein SB
1144	 39.95	0	1233278..1234048	-	256	157691942	spoIISA	BPUM_1160	-	stage II sporulation membrane protein SA
1145	 40.34	0	1234185..1235183	-	332	157691943	pit	BPUM_1161	-	PiT family inorganic phosphate transporter
1146	 33.33	-2	1235199..1235816	-	205	157691944	ykaA	BPUM_1162	-	phosphate transport regulator
1147	 41.83	0	1236023..1236481	-	152	157691945	-	BPUM_1163	-	hypothetical protein
1148	 43.49	0	1236709..1238460	+	583	157691946	ggt	BPUM_1164	-	gamma-glutamyltransferase
1149	 24.64	-2	1238495..1238701	+	68	157691947	-	BPUM_1165	-	hypothetical protein
1150	 41.88	0	1238787..1239254	+	155	157691948	-	BPUM_1166	-	PTS family fructose/mannitol porter component IIA
1151	 43.23	0	1239309..1240682	+	457	157691949	-	BPUM_1167	-	PTS family galactitol (gat) porter component IIC
1152	 41.58	0	1240702..1240980	+	92	157691950	-	BPUM_1168	-	PTS family galactitol (gat) porter component IIB
1153	 44.97	+1	1241042..1241488	+	148	157691951	-	BPUM_1169	-	hypothetical protein
1154	 46.12	+1	1241485..1242516	+	343	157691952	gutB	BPUM_1170	-	L-iditol 2-dehydrogenase
1155	 42.68	0	1242699..1243682	+	327	157691953	-	BPUM_1171	-	pyruvate dehydrogenase (acetyl-transferring) E1 component alpha subunit
1156	 45.78	+1	1243699..1244694	+	331	157691954	-	BPUM_1172	-	pyruvate dehydrogenase (acetyl-transferring) E1 component beta subunit
1157	 44.65	0	1244712..1246037	+	441	157691955	-	BPUM_1173	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1158	 44.83	+1	1246050..1247432	+	460	157691956	-	BPUM_1174	-	dihydrolipoyl dehydrogenase
1159	 47.01	+1	1247458..1248159	+	233	157691957	-	BPUM_1175	-	short chain dehydrogenase
1160	 45.24	+1	1248149..1248904	+	251	157691958	ywfD	BPUM_1176	-	short chain dehydrogenase
1161	 42.74	0	1249016..1249972	+	318	157691959	-	BPUM_1177	-	transcriptional regulator
1162	 39.68	0	1250052..1250366	+	104	157691960	-	BPUM_1178	-	hypothetical protein
1163	 43.14	0	1250537..1251862	-	441	157691961	potE	BPUM_1179	-	APC family amino acid-polyamine-organocation transporter
1164	 43.78	0	1252181..1253137	+	318	157691962	gloA	BPUM_1180	-	lactoylglutathione lyase
1165	 44.65	0	1253222..1254538	-	438	157691963	htrA	BPUM_1181	-	heat shock protein HtrA
1166	 34.48	-1	1254521..1254694	+	57	157691964	-	BPUM_1182	-	hypothetical protein
1167	 44.40	0	1254698..1255519	+	273	157691965	proC	BPUM_1183	-	pyrroline-5-carboxylate reductase
1168	 44.16	0	1255703..1256533	+	276	157691966	dppA	BPUM_1184	-	M55 family D-aminopeptidase
1169	 41.24	0	1256552..1257487	+	311	157691967	dppB	BPUM_1185	-	peptide ABC transporter membrane protein
1170	 46.52	+1	1257484..1258446	+	320	157691968	dppC	BPUM_1186	-	peptide ABC transporter membrane protein
1171	 47.22	+1	1258454..1259461	+	335	157691969	dppD	BPUM_1187	-	peptide ABC transporter ATP-binding protein
1172	 41.84	0	1259461..1261083	+	540	157691970	dppE	BPUM_1188	-	peptide ABC transporter ATP-binding protein
1173	 46.50	+1	1261195..1262136	+	313	157691971	ykfA	BPUM_1189	-	U61 family carboxypeptidase
1174	 46.02	+1	1262133..1263212	+	359	157691972	ykfB	BPUM_1190	-	L-alanine-DL-glutamate epimerase
1175	 45.86	+1	1263212..1264129	+	305	157691973	ykfC	BPUM_1191	-	hydrolase
1176	 45.20	+1	1264119..1265087	+	322	157691974	-	BPUM_1192	-	oligopeptide ABC transporter ATP-binding protein
1177	 39.91	0	1265126..1266007	-	293	157691975	-	BPUM_1193	-	N-dimethylarginine dimethylaminohydrolase
1178	 43.43	0	1266184..1266708	+	174	157691976	-	BPUM_1194	-	acyl-CoA thioester hydrolase
1179	 41.59	0	1266823..1267149	+	108	157691977	-	BPUM_1195	-	PadR family transcriptional regulator
1180	 40.30	0	1267663..1267863	-	66	157691978	-	BPUM_1196	-	hypothetical protein
1181	 45.83	+1	1267931..1268146	+	71	157691979	-	BPUM_1197	-	hypothetical protein
1182	 42.33	0	1268219..1268707	+	162	157691980	-	BPUM_1198	-	hypothetical protein
1183	 41.58	0	1268726..1269271	+	181	157691981	-	BPUM_1199	-	acetyltransferase
1184	 45.40	+1	1269286..1270329	-	347	157691982	ada	BPUM_1200	-	methylated-DNA--protein-cysteine methyltransferase
1185	 28.89	-2	1270501..1270635	-	44	157691983	-	BPUM_1201	-	hypothetical protein
1186	 46.67	+1	1271031..1271360	+	109	157691984	-	BPUM_1202	-	DMT superfamily drug/metabolite transporter
1187	 41.90	0	1271357..1271671	+	104	157691985	ykkD	BPUM_1203	-	DMT superfamily drug/metabolite transporter
1188	 36.94	-1	1271704..1271925	-	73	157691986	-	BPUM_1204	-	hypothetical protein
1189	 40.97	0	1272052..1272954	+	300	157691987	purU	BPUM_1205	-	formyltetrahydrofolate deformylase
1190	 39.78	0	1273125..1273310	+	61	157691988	-	BPUM_1206	-	hypothetical protein
1191	 42.71	0	1273273..1274370	+	365	157691989	proB	BPUM_1207	-	gamma-glutamyl kinase
1192	 42.37	0	1274383..1275633	+	416	157691990	proA1	BPUM_1208	-	gamma-glutamyl phosphate reductase
1193	 37.73	0	1275756..1276892	+	378	157691991	rapA2	BPUM_1209	-	aspartate phosphatase response regulator
41.07	MEAN

3.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.