IslandPathversion 1.0

IslandPath Analysis: Bacillus pumilus SAFR-032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 41.07 STD DEV: 3.65
Bacillus pumilus SAFR-032, complete genome - 1..3704465
3681 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
994	 42.97	0	1091795..1093642	+	615	157691792	asnO	BPUM_1010	-	asparagine synthase (glutamine-hydrolyzing)
995	 41.63	0	1093790..1095307	+	505	157691793	-	BPUM_1011	-	phytoene dehydrogenase
996	 42.38	0	1096772..1097611	+	279	157691794	yisP	BPUM_1012	-	phytoene synthase
997	 41.68	0	1097637..1099013	-	458	157691795	yisQ	BPUM_1013	-	MATE family multi antimicrobial extrusion protein
998	 43.25	0	1099127..1099993	+	288	157691796	yisR	BPUM_1014	-	transcriptional regulator
999	 43.55	0	1100008..1100565	+	185	157691797	-	BPUM_1015	-	acetyltransferase
1000	 36.23	-1	1100629..1100904	+	91	157691798	-	BPUM_1016	-	hypothetical protein
1001	 39.02	0	1100933..1101196	+	87	157691799	-	BPUM_1017	-	hypothetical protein
1002	 40.26	0	1101178..1101726	-	182	157691800	-	BPUM_1018	-	serine O-acetyltransferase
1003	 42.61	0	1102113..1103459	+	448	157691801	-	BPUM_1019	-	diaminobutyrate--2-oxoglutarate aminotransferase
1004	 42.62	0	1103446..1104942	+	498	157691802	-	BPUM_1020	-	diaminobutyrate decarboxylase
1005	 43.27	0	1104939..1106720	+	593	157691803	-	BPUM_1021	-	IucA/IucC family siderophore biosynthesis protein
1006	 40.18	0	1106717..1107271	+	184	157691804	-	BPUM_1022	-	siderophore biosynthesis protein
1007	 42.00	0	1107246..1108595	+	449	157691805	iucD	BPUM_1023	-	L-lysine 6-monooxygenase (NADPH)
1008	 42.70	0	1108609..1110423	+	604	157691806	-	BPUM_1024	-	IucA/IucC family siderophore biosynthesis protein
1009	 43.94	0	1110466..1111323	-	285	157691807	yitH	BPUM_1025	-	GNAT family acetyltransferase
1010	 44.82	+1	1111491..1114919	-	1142	157691808	-	BPUM_1026	-	methionine synthase
1011	 42.45	0	1114903..1116744	-	613	157691809	yitJ	BPUM_1027	-	bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein
1012	 39.84	0	1117023..1117514	-	163	157691810	yitK	BPUM_1028	-	nucleotide-binding protein
1013	 44.64	0	1117752..1118600	+	282	157691811	yitL	BPUM_1029	-	hypothetical protein
1014	 39.64	0	1118675..1119799	+	374	157691812	yufN	BPUM_1030	-	lipid ABC transporter substrate-binding protein
1015	 41.15	0	1119796..1121445	+	549	157691813	-	BPUM_1031	-	sensor histidine kinase
1016	 41.29	0	1121493..1122347	-	284	157691814	yitS	BPUM_1032	-	spore protein YitS
1017	 40.33	0	1122488..1123330	+	280	157691815	yitT	BPUM_1033	-	hypothetical protein
1018	 40.00	0	1123441..1123800	+	119	157691816	ipi	BPUM_1034	-	intracellular proteinase inhibitor BsuPI
1019	 43.23	0	1123861..1124052	-	63	157691817	-	BPUM_1035	-	hypothetical protein
1020	 42.48	0	1124049..1124201	-	50	157691818	-	BPUM_1036	-	hypothetical protein
1021	 41.94	0	1124290..1125102	-	270	157691819	yitU	BPUM_1037	-	HAD family phosphatase
1022	 41.86	0	1125239..1126024	+	261	157691820	yitV	BPUM_1038	-	serine peptidase
1023	 41.75	0	1126070..1126378	+	102	157691821	yitW	BPUM_1039	-	hypothetical protein
1024	 38.45	0	1126501..1127946	+	481	157691822	yitY	BPUM_1040	-	major facilitator transporter
1025	 39.53	0	1127943..1128491	+	182	157691823	yitZ	BPUM_1041	-	major facilitator transporter
1026	 42.43	0	1128623..1129666	+	347	157691824	argC	BPUM_1042	-	N-acetyl-gamma-glutamyl-phosphate reductase
1027	 43.16	0	1129687..1130907	+	406	157691825	argJ	BPUM_1043	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1028	 42.21	0	1130922..1131698	+	258	157691826	argB	BPUM_1044	-	acetylglutamate kinase
1029	 43.32	0	1131695..1132846	+	383	157691827	argD	BPUM_1045	-	acetylornithine aminotransferase
1030	 42.94	0	1132916..1133977	+	353	157691828	carA	BPUM_1046	-	carbamoyl phosphate synthase small subunit
1031	 43.88	0	1133970..1137050	+	1026	157691829	carB1	BPUM_1047	-	carbamoyl phosphate synthase large subunit
1032	 40.90	0	1137047..1137997	+	316	157691830	argF	BPUM_1048	-	ornithine carbamoyltransferase
1033	 43.33	0	1138100..1138279	+	59	157691831	yjzC	BPUM_1049	-	hypothetical protein
1034	 43.13	0	1138450..1139715	+	421	157691832	yvqJ1	BPUM_1050	-	major facilitator transporter
1035	 36.92	-1	1139831..1140025	-	64	157691833	yjzD	BPUM_1051	-	hypothetical protein
1036	 42.65	0	1140237..1140977	+	246	157691834	yjaU	BPUM_1052	-	hypothetical protein
1037	 39.93	0	1141053..1141628	+	191	157691835	yjaV	BPUM_1053	-	hypothetical protein
1038	 38.63	0	1141719..1142681	+	320	157691836	med	BPUM_1054	-	positive regulator of comK
1039	 38.89	0	1142692..1142889	+	65	157691837	comZ	BPUM_1055	-	late competence protein ComZ
1040	 40.17	0	1142900..1143133	-	77	157691838	-	BPUM_1056	-	hypothetical protein
1041	 43.77	0	1143303..1144241	+	312	157691839	fabHA	BPUM_1057	-	3-oxoacyl-(acyl carrier protein) synthase III
1042	 43.48	0	1144263..1145504	+	413	157691840	fabF	BPUM_1058	-	3-oxoacyl-(acyl carrier protein) synthase II
1043	 41.42	0	1145582..1146385	+	267	157691841	yjaZ	BPUM_1059	-	hypothetical protein
1044	 45.36	+1	1146547..1147527	+	326	157691842	appD	BPUM_1060	-	oligopeptide ABC transporter ATP-binding protein
1045	 43.40	0	1147524..1148546	+	340	157691843	appF	BPUM_1061	-	oligopeptide ABC transporter ATP-binding protein
1046	 41.12	0	1148630..1150261	+	543	157691844	appA	BPUM_1062	-	oligopeptide ABC transporter substrate-binding protein
1047	 43.32	0	1150490..1151440	+	316	157691845	appB	BPUM_1063	-	oligopeptide ABC transporter membrane protein
1048	 43.56	0	1151474..1152373	+	299	157691846	appC	BPUM_1064	-	oligopeptide ABC transporter membrane protein
1049	 33.60	-2	1152491..1153243	+	250	157691847	-	BPUM_1065	-	methyltransferase
1050	 38.15	0	1153433..1154677	+	414	157691848	yfiS	BPUM_1066	-	major facilitator transporter
1051	 40.64	0	1154750..1155502	+	250	157691849	yjbA	BPUM_1067	-	hypothetical protein
1052	 41.47	0	1155538..1156533	-	331	157691850	trpS	BPUM_1068	-	tryptophanyl-tRNA synthetase
1053	 27.22	-2	1156850..1157209	-	119	157691851	-	BPUM_1069	-	hypothetical protein
1054	 35.74	-1	1157563..1159221	+	552	157691852	-	BPUM_1070	-	oligopeptide ABC transporter substrate-binding protein
1055	 37.63	0	1159331..1160260	+	309	157691853	oppB	BPUM_1071	-	oligopeptide ABC transporter membrane protein
1056	 37.69	0	1160257..1161288	+	343	157691854	oppC	BPUM_1072	-	oligopeptide ABC transporter membrane protein
1057	 37.65	0	1161304..1162368	+	354	157691855	oppD	BPUM_1073	-	oligopeptide ABC transporter ATP-binding protein
1058	 40.65	0	1162361..1163290	+	309	157691856	oppF	BPUM_1074	-	ABC transporter ATP-binding protein
1059	 36.81	-1	1163396..1163683	+	95	157691857	-	BPUM_1075	-	hypothetical protein
1060	 37.48	0	1163820..1164398	+	192	157691858	yjbC	BPUM_1076	-	GCN5-related N-acetyltransferase
1061	 36.62	-1	1164592..1164987	+	131	157691859	spx	BPUM_1077	-	transcriptional regulator Spx
1062	 41.44	0	1165028..1165693	-	221	157691860	yjbE	BPUM_1078	-	hypothetical protein
1063	 37.69	0	1165956..1166621	+	221	157691861	mecA	BPUM_1079	-	adaptor protein
1064	 38.92	0	1166707..1168227	+	506	157691862	-	BPUM_1080	-	cardiolipin synthetase
1065	 42.12	0	1168391..1169551	+	386	157691863	yjbF	BPUM_1081	-	competence protein
1066	 37.17	-1	1169532..1171592	+	686	157691864	yjbG	BPUM_1082	-	M03 oligoendopeptidase F
1067	 36.21	-1	1171696..1171869	-	57	157691865	-	BPUM_1083	-	hypothetical protein
1068	 38.71	0	1172167..1173078	-	303	157691866	yjbH	BPUM_1084	-	hypothetical protein
1069	 43.61	0	1173075..1173473	-	132	157691867	yjbI	BPUM_1085	-	hemoglobin
1070	 43.32	0	1173750..1174520	-	256	157691868	yjbJ	BPUM_1086	-	ABC transporter ATP-binding protein
1071	 37.13	-1	1174539..1175117	-	192	157691869	yjbK	BPUM_1087	-	hypothetical protein
1072	 37.94	0	1175351..1175719	+	122	157691870	yjbL	BPUM_1088	-	hypothetical protein
1073	 42.38	0	1175753..1176382	+	209	157691871	yjbM	BPUM_1089	-	hypothetical protein
1074	 42.20	0	1176448..1177248	+	266	157691872	ppnK	BPUM_1090	-	inorganic polyphosphate/ATP-NAD kinase
1075	 45.44	+1	1177293..1178159	+	288	157691873	rluA2	BPUM_1091	-	pseudouridylate synthase
1076	 44.62	0	1178201..1178944	-	247	157691874	yjbP	BPUM_1092	-	bis(5'-nucleosyl)-tetraphosphatase PrpE
1077	 41.31	0	1179107..1180948	+	613	157691875	yjbQ	BPUM_1093	-	CPA2 family monovalent cation:proton (H+) antiporter-2
1078	 42.76	0	1181196..1181906	+	236	157691876	tenA	BPUM_1094	-	thiaminase
1079	 44.23	0	1181866..1182498	+	210	157691877	tenI	BPUM_1095	-	transcriptional regulator TenI
1080	 46.27	+1	1182482..1183594	+	370	157691878	goxB	BPUM_1096	-	glycine oxidase
1081	 35.29	-1	1183591..1183794	+	67	157691879	thiS	BPUM_1097	-	hydroxyethylthiazole phosphate biosynthesis protein
1082	 44.66	0	1183799..1184566	+	255	157691880	thiG	BPUM_1098	-	thiazole synthase
1083	 44.58	0	1184563..1185576	+	337	157691881	thiF	BPUM_1099	-	thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein
1084	 45.85	+1	1185593..1186399	+	268	157691882	thiDA	BPUM_1100	-	phosphomethylpyrimidine kinase
1085	 44.40	0	1186550..1187326	+	258	157691883	fabI	BPUM_1101	-	enoyl-(acyl carrier protein) reductase
1086	 40.98	0	1187441..1188055	+	204	157691884	yjbX	BPUM_1102	-	spore protein YjbX
1087	 41.89	0	1188091..1188534	-	147	157691885	cotZ	BPUM_1103	-	spore coat protein Z
1088	 43.83	0	1188551..1188712	-	53	157691886	-	BPUM_1104	-	hypothetical protein
1089	 41.06	0	1188740..1189231	-	163	157691887	cotY	BPUM_1105	-	spore coat protein Y
1090	 41.46	0	1189378..1189857	-	159	157691888	cotX	BPUM_1106	-	spore coat protein X
1091	 38.54	0	1189946..1190329	-	127	157691889	cotW	BPUM_1107	-	spore coat protein W
1092	 37.37	-1	1190326..1190721	-	131	157691890	cotV	BPUM_1108	-	spore coat protein V
1093	 41.89	0	1190902..1191240	+	112	157691891	yjcA	BPUM_1109	-	hypothetical protein
41.07	MEAN

3.65	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.