IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
863	 51.38	+1	1024667..1026151	-	494	53712154	-	BF0861	-	NADH dehydrogenase I chain M
864	 51.33	+1	1026164..1028074	-	636	53712155	-	BF0862	-	NADH dehydrogenase I chain L
865	 42.95	0	1028111..1028422	-	103	53712156	-	BF0863	-	NADH dehydrogenase I chain K
866	 47.17	0	1028429..1028941	-	170	53712157	-	BF0864	-	NADH dehydrogenase I chain J
867	 46.04	0	1028948..1029427	-	159	53712158	-	BF0865	-	NADH dehydrogenase I chain I
868	 47.91	0	1029444..1030520	-	358	53712159	-	BF0866	-	NADH dehydrogenase I chain H
869	 50.85	+1	1030600..1032192	-	530	53712160	-	BF0867	-	NADH dehydrogenase I chain D
870	 48.39	0	1032214..1032804	-	196	53712161	-	BF0868	-	NADH dehydrogenase I chain B
871	 46.44	0	1032795..1033145	-	116	53712162	-	BF0869	-	NADH dehydrogenase I chain A
872	 37.30	-1	1033289..1033666	-	125	53712163	-	BF0870	-	hypothetical protein
873	 48.00	0	1033853..1035304	-	483	53712164	-	BF0871	-	Trk system K+ uptake protein TrkH
874	 48.55	0	1035309..1036649	-	446	53712165	trkA	BF0872	-	potassium transporter peripheral membrane component
875	 49.61	+1	1036688..1038634	-	648	53712166	-	BF0873	-	1-deoxy-D-xylulose-5-phosphate synthase
876	 33.86	-1	1038834..1039022	+	62	53712167	-	BF0874	-	hypothetical protein
877	 48.14	0	1039133..1040476	-	447	53712168	-	BF0875	-	hypothetical protein
878	 42.09	0	1040473..1040769	-	98	53712169	-	BF0876	-	hypothetical protein
879	 46.45	0	1040975..1041622	+	215	53712170	-	BF0877	-	phosphoglycolate phosphatase
880	 49.52	+1	1041702..1043258	-	518	53712171	-	BF0878	-	putative secreted sulfatase ydeN precursor
881	 46.87	0	1043279..1045354	-	691	53712172	-	BF0879	-	hypothetical protein
882	 46.35	0	1045364..1046746	-	460	53712173	-	BF0880	-	hypothetical protein
883	 44.49	0	1046749..1048200	-	483	53712174	-	BF0881	-	putative sulfatase yidJ
884	 40.29	0	1048319..1050301	-	660	53712175	-	BF0882	-	hypothetical protein
885	 39.58	0	1050314..1053499	-	1061	53712176	-	BF0883	-	hypothetical protein
886	 38.55	0	1053784..1057770	+	1328	53712177	-	BF0884	-	two-component system sensor histidine kinase/response regulator hybrid
887	 44.11	0	1057937..1059430	-	497	53712178	-	BF0885	-	hexuronate transporter
888	 45.33	0	1059826..1061175	+	449	53712179	-	BF0886	-	putative glycosylhydrolase
889	 44.63	0	1061194..1062441	+	415	53712180	-	BF0887	-	hypothetical protein
890	 47.95	0	1062762..1066223	-	1153	53712181	-	BF0888	-	DNA helicase
891	 36.04	-1	1066319..1067317	-	332	53712182	-	BF0889	-	acyltransferase
892	 44.65	0	1067567..1068361	-	264	53712183	-	BF0890	-	putative Sec-independent protein translocase
893	 39.04	0	1068438..1068665	-	75	53712184	-	BF0891	-	putative Sec-independent protein translocase
894	 47.00	0	1068827..1071373	-	848	53712185	-	BF0892	-	putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase
895	 45.29	0	1071352..1072338	-	328	53712186	-	BF0893	-	hypothetical protein
896	 46.59	0	1072223..1072471	-	82	53712187	-	BF0894	-	hypothetical protein
897	 32.68	-1	1072541..1072693	-	50	53712188	-	BF0895	-	hypothetical protein
898	 39.29	0	1072891..1073058	+	55	53712189	-	BF0896	-	hypothetical protein
899	 40.51	0	1073438..1073827	-	129	53712190	-	BF0897	-	hypothetical protein
900	 38.52	0	1074262..1074627	+	121	53712191	-	BF0898	-	hypothetical protein
901	 43.27	0	1074646..1076205	+	519	53712192	-	BF0899	-	hypothetical protein
902	 41.80	0	1076447..1078489	+	680	53712193	-	BF0900	-	hypothetical protein
903	 36.59	-1	1078585..1079721	-	378	53712194	-	BF0901	-	hypothetical protein
904	 37.82	0	1079767..1079922	+	51	53712195	-	BF0902	-	hypothetical protein
905	 43.71	0	1080062..1080967	-	301	53712196	miaA	BF0903	-	tRNA delta(2)-isopentenylpyrophosphate transferase
906	 40.06	0	1081064..1081732	-	222	53712197	-	BF0904	-	hypothetical protein
907	 44.53	0	1081761..1082528	-	255	53712198	-	BF0905	-	UDP-N-acetylglucosamine acyltransferase
908	 45.31	0	1082539..1083924	-	461	53712199	-	BF0906	-	bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase
909	 44.48	0	1083928..1084968	-	346	53712200	-	BF0907	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
910	 43.50	0	1085051..1086280	-	409	53712201	-	BF0908	-	phosphohydrolase
911	 43.52	0	1086280..1087104	-	274	53712202	-	BF0909	-	orotidine 5'-phosphate decarboxylase
912	 47.08	0	1087153..1088265	-	370	53712203	prfA	BF0910	-	peptide chain release factor 1
913	 46.27	0	1088329..1089495	-	388	53712204	-	BF0911	-	putative phosphoribosylformylglycinamidine cyclo-ligase
914	 32.35	-1	1089488..1089691	-	67	53712205	-	BF0912	-	hypothetical protein
915	 46.05	0	1090081..1090662	-	193	53712206	-	BF0913	-	hypothetical protein
916	 47.67	0	1090758..1091678	-	306	53712207	-	BF0914	-	hypothetical protein
917	 43.95	0	1091680..1092630	-	316	53712208	-	BF0915	-	hypothetical protein
918	 39.38	0	1092631..1093374	-	247	53712209	-	BF0916	-	shikimate 5-dehydrogenase
919	 42.82	0	1093401..1094138	-	245	53712210	ubiE	BF0917	-	ubiquinone/menaquinone biosynthesis methyltransferase
920	 44.23	0	1094260..1095204	-	314	53712211	hemH	BF0918	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
921	 43.00	0	1095224..1096237	-	337	53712212	-	BF0919	-	phosphate starvation-inducible protein PhoH
922	 42.14	0	1096402..1097082	+	226	53712213	-	BF0920	-	hypothetical protein
923	 44.34	0	1097166..1098791	-	541	53712214	-	BF0921	-	flotillin-like protein
924	 38.96	0	1098816..1099313	-	165	53712215	-	BF0922	-	hypothetical protein
925	 43.74	0	1099468..1101255	+	595	53712216	-	BF0923	-	hypothetical protein
926	 41.99	0	1101287..1102441	+	384	53712217	-	BF0924	-	hypothetical protein
927	 44.66	0	1102522..1103280	+	252	53712218	truA	BF0925	-	tRNA pseudouridine synthase A
928	 41.33	0	1103312..1104211	+	299	53712219	-	BF0926	-	putative permease
929	 45.11	0	1104239..1104892	+	217	53712220	-	BF0927	-	hypothetical protein
930	 45.58	0	1104873..1105958	-	361	53712221	-	BF0928	-	hypothetical protein
931	 48.53	0	1105980..1109315	-	1111	53712222	-	BF0929	-	beta-galactosidase
932	 44.67	0	1109341..1110231	-	296	53712223	-	BF0930	-	putative transporter
933	 47.96	0	1110343..1111737	-	464	53712224	-	BF0931	-	putative oxidoreductase
934	 43.40	0	1111943..1112101	-	52	53712225	-	BF0932	-	hypothetical protein
935	 50.12	+1	1112843..1113652	-	269	53712226	-	BF0934	-	hypothetical protein
936	 49.00	+1	1113668..1115110	-	480	53712227	-	BF0935	-	hypothetical protein
937	 48.77	0	1115234..1118005	-	923	53712228	-	BF0936	-	putative beta-galactosidase
938	 48.11	0	1118002..1121304	-	1100	53712229	-	BF0937	-	hypothetical protein
939	 47.61	0	1121318..1122697	-	459	53712230	-	BF0938	-	xylose/H+ symporter
940	 42.42	0	1122775..1123731	+	318	53712231	-	BF0939	-	transcriptional regulator
941	 45.55	0	1123886..1126537	-	883	53712232	-	BF0940	-	beta-glucosidase
942	 48.36	0	1126644..1128080	-	478	53712233	-	BF0941	-	hypothetical protein
943	 40.46	0	1128092..1129621	-	509	53712234	-	BF0942	-	hypothetical protein
944	 43.16	0	1129639..1131276	-	545	53712235	-	BF0943	-	hypothetical protein
945	 40.63	0	1131298..1134615	-	1105	53712236	-	BF0944	-	hypothetical protein
946	 40.66	0	1134926..1136686	-	586	53712237	-	BF0945	-	hypothetical protein
947	 39.81	0	1136715..1140125	-	1136	53712238	-	BF0946	-	hypothetical protein
948	 37.86	0	1140415..1142181	-	588	53712239	-	BF0947	-	hypothetical protein
949	 37.20	-1	1142195..1145506	-	1103	53712240	-	BF0948	-	hypothetical protein
950	 28.25	-2	1145824..1146000	-	58	53712241	-	BF0949	-	hypothetical protein
951	 33.33	-1	1146395..1146970	+	191	53712242	-	BF0950	-	RNA polymerase ECF-type sigma factor
952	 39.82	0	1147096..1148082	+	328	53712243	-	BF0951	-	putative anti-sigma factor
953	 39.13	0	1148335..1151718	+	1127	53712244	-	BF0952	-	hypothetical protein
954	 40.11	0	1151737..1153521	+	594	53712245	-	BF0953	-	hypothetical protein
955	 36.91	-1	1154127..1155941	+	604	53712246	-	BF0954	-	hypothetical protein
956	 47.42	0	1156038..1157315	-	425	53712247	-	BF0955	-	putative oxidoreductase
957	 40.00	0	1157616..1158110	-	164	161936266	ribH	BF0956	-	riboflavin synthase subunit beta
958	 44.30	0	1158196..1158879	-	227	53712249	-	BF0957	-	hypothetical protein
959	 43.13	0	1159040..1160152	+	370	53712250	-	BF0958	-	DNA replication and repair protein RecF
960	 45.70	0	1160149..1160439	+	96	53712251	-	BF0959	-	hypothetical protein
961	 40.74	0	1160461..1160622	+	53	53712252	-	BF0960	-	hypothetical protein
962	 44.87	0	1160562..1161350	-	262	53712253	-	BF0961	-	putative histidinol-phosphatase
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.