IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
809	 36.88	-1	958766..959836	+	356	53712100	-	BF0807	-	dTDP-glucose 4,6-dehydratase
810	 34.37	-1	959844..961292	+	482	53712101	-	BF0808	-	O-antigen repeat-containing transporter
811	 34.71	-1	961299..962681	+	460	53712102	-	BF0809	-	putative dNDP-4-keto-6-deoxy-glucose-2,3- dehydratase
812	 37.92	0	962686..963666	+	326	53712103	-	BF0810	-	NDP-hexose-3-ketoreductase
813	 37.12	-1	963653..964735	+	360	53712104	-	BF0811	-	aminotransferase
814	 32.38	-1	964749..965903	+	384	53712105	-	BF0812	-	hypothetical protein
815	 30.32	-2	965916..966779	+	287	53712106	-	BF0813	-	glycosyltransferase
816	 33.33	-1	966781..967797	+	338	53712107	-	BF0814	-	glycosyltransferase
817	 32.06	-1	967801..968898	+	365	53712108	-	BF0815	-	putative polysaccharide polymerase
818	 32.80	-1	968902..970023	+	373	53712109	-	BF0816	-	putative glycosyltransferase
819	 37.27	-1	970013..970621	+	202	53712110	-	BF0817	-	putative undecaprenyl-phosphate glycosyl-1-phosphate transferase
820	 32.71	-1	970625..971266	+	213	53712111	-	BF0818	-	serine O-acetyltransferase
821	 31.17	-2	971279..971509	+	76	53712112	-	BF0819	-	putative acyl carrier protein
822	 37.31	-1	971509..972564	+	351	53712113	-	BF0820	-	3-oxoacyl-[acyl carrier protein] synthase
823	 36.92	-1	972570..973322	+	250	53712114	-	BF0821	-	3-oxoacyl-[acyl-carrier-protein] reductase
824	 37.39	-1	973365..974375	+	336	53712115	-	BF0822	-	3-oxoacyl-[acyl-carrier-protein] synthase
825	 35.32	-1	974379..974780	+	133	53712116	-	BF0823	-	putative lactoylglutathione lyase
826	 35.16	-1	974791..976380	+	529	53712117	-	BF0824	-	hypothetical protein
827	 36.57	-1	976382..976597	+	71	53712118	-	BF0825	-	acyl carrier protein
828	 34.83	-1	976598..977197	+	199	53712119	-	BF0826	-	hypothetical protein
829	 48.77	0	977284..978417	+	377	53712120	-	BF0827	-	putative aminotransferase
830	 50.62	+1	978801..979280	+	159	53712121	-	BF0828	-	putative non-specific DNA binding protein
831	 42.94	0	979286..979462	-	58	53712122	-	BF0829	-	hypothetical protein
832	 41.21	0	979542..981089	+	515	53712123	-	BF0830	-	hypothetical protein
833	 46.61	0	981157..982158	-	333	53712124	-	BF0831	-	putative oxidoreductase
834	 43.34	0	982338..984506	+	722	53712125	-	BF0832	-	beta-xylosidase
835	 41.08	0	984886..988023	+	1045	53712126	-	BF0833	-	hypothetical protein
836	 44.18	0	988049..989716	+	555	53712127	-	BF0834	-	hypothetical protein
837	 40.59	0	989716..990858	+	380	53712128	-	BF0835	-	hypothetical protein
838	 39.43	0	990980..991225	+	81	53712129	-	BF0836	-	hypothetical protein
839	 41.26	0	991222..992772	+	516	53712130	-	BF0837	-	hypothetical protein
840	 42.85	0	992769..995984	+	1071	53712131	-	BF0838	-	hypothetical protein
841	 41.31	0	995984..997099	+	371	53712132	-	BF0839	-	mannan endo-1,4-beta-mannosidase precursor
842	 43.81	0	997217..998524	+	435	53712133	-	BF0840	-	endo-1,4-beta-mannosidase
843	 47.56	0	998521..1000959	+	812	53712134	-	BF0841	-	periplasmic beta-glucosidase precursor
844	 46.33	0	1000965..1002218	+	417	53712135	-	BF0842	-	hypothetical protein
845	 45.01	0	1002399..1003049	+	216	53712136	-	BF0843	-	corrinoid methyltransferase protein
846	 46.52	0	1003052..1003756	+	234	53712137	-	BF0844	-	hypothetical protein
847	 46.77	0	1003763..1004767	+	334	53712138	-	BF0845	-	methylcobamide:CoM methyltransferase MtbA
848	 47.56	0	1004859..1005983	+	374	53712139	-	BF0846	-	mannan endo-1,4-beta-mannosidase
849	 48.51	0	1006020..1007192	+	390	53712140	-	BF0847	-	hypothetical protein
850	 47.59	0	1007209..1008597	+	462	53712141	-	BF0848	-	cation symporter
851	 48.77	0	1008610..1009788	+	392	53712142	-	BF0849	-	putative N-acyl-D-glucosamine 2-epimerase
852	 47.00	0	1009858..1011621	+	587	53712143	-	BF0850	-	hypothetical protein
853	 50.26	+1	1011566..1013083	+	505	53712144	-	BF0851	-	hypothetical protein
854	 50.40	+1	1013087..1014217	+	376	53712145	-	BF0852	-	putative translation initiation inhibitor
855	 43.39	0	1014204..1014551	+	115	53712146	-	BF0853	-	hypothetical protein
856	 47.06	0	1014596..1014799	-	67	53712147	-	BF0854	-	hypothetical protein
857	 53.52	+1	1014822..1015970	-	382	53712148	-	BF0855	-	hypothetical protein
858	 51.92	+1	1016043..1017317	-	424	53712149	-	BF0856	-	hypothetical protein
859	 50.59	+1	1017386..1020085	-	899	53712150	-	BF0857	-	TonB-dependent receptor
860	 43.59	0	1019994..1020266	+	90	53712151	-	BF0858	-	hypothetical protein
861	 47.60	0	1020323..1023112	+	929	53712152	-	BF0859	-	two-component system sensor histidine kinase
862	 47.18	0	1023209..1024660	-	483	53712153	-	BF0860	-	NADH dehydrogenase I chain N
863	 51.38	+1	1024667..1026151	-	494	53712154	-	BF0861	-	NADH dehydrogenase I chain M
864	 51.33	+1	1026164..1028074	-	636	53712155	-	BF0862	-	NADH dehydrogenase I chain L
865	 42.95	0	1028111..1028422	-	103	53712156	-	BF0863	-	NADH dehydrogenase I chain K
866	 47.17	0	1028429..1028941	-	170	53712157	-	BF0864	-	NADH dehydrogenase I chain J
867	 46.04	0	1028948..1029427	-	159	53712158	-	BF0865	-	NADH dehydrogenase I chain I
868	 47.91	0	1029444..1030520	-	358	53712159	-	BF0866	-	NADH dehydrogenase I chain H
869	 50.85	+1	1030600..1032192	-	530	53712160	-	BF0867	-	NADH dehydrogenase I chain D
870	 48.39	0	1032214..1032804	-	196	53712161	-	BF0868	-	NADH dehydrogenase I chain B
871	 46.44	0	1032795..1033145	-	116	53712162	-	BF0869	-	NADH dehydrogenase I chain A
872	 37.30	-1	1033289..1033666	-	125	53712163	-	BF0870	-	hypothetical protein
873	 48.00	0	1033853..1035304	-	483	53712164	-	BF0871	-	Trk system K+ uptake protein TrkH
874	 48.55	0	1035309..1036649	-	446	53712165	trkA	BF0872	-	potassium transporter peripheral membrane component
875	 49.61	+1	1036688..1038634	-	648	53712166	-	BF0873	-	1-deoxy-D-xylulose-5-phosphate synthase
876	 33.86	-1	1038834..1039022	+	62	53712167	-	BF0874	-	hypothetical protein
877	 48.14	0	1039133..1040476	-	447	53712168	-	BF0875	-	hypothetical protein
878	 42.09	0	1040473..1040769	-	98	53712169	-	BF0876	-	hypothetical protein
879	 46.45	0	1040975..1041622	+	215	53712170	-	BF0877	-	phosphoglycolate phosphatase
880	 49.52	+1	1041702..1043258	-	518	53712171	-	BF0878	-	putative secreted sulfatase ydeN precursor
881	 46.87	0	1043279..1045354	-	691	53712172	-	BF0879	-	hypothetical protein
882	 46.35	0	1045364..1046746	-	460	53712173	-	BF0880	-	hypothetical protein
883	 44.49	0	1046749..1048200	-	483	53712174	-	BF0881	-	putative sulfatase yidJ
884	 40.29	0	1048319..1050301	-	660	53712175	-	BF0882	-	hypothetical protein
885	 39.58	0	1050314..1053499	-	1061	53712176	-	BF0883	-	hypothetical protein
886	 38.55	0	1053784..1057770	+	1328	53712177	-	BF0884	-	two-component system sensor histidine kinase/response regulator hybrid
887	 44.11	0	1057937..1059430	-	497	53712178	-	BF0885	-	hexuronate transporter
888	 45.33	0	1059826..1061175	+	449	53712179	-	BF0886	-	putative glycosylhydrolase
889	 44.63	0	1061194..1062441	+	415	53712180	-	BF0887	-	hypothetical protein
890	 47.95	0	1062762..1066223	-	1153	53712181	-	BF0888	-	DNA helicase
891	 36.04	-1	1066319..1067317	-	332	53712182	-	BF0889	-	acyltransferase
892	 44.65	0	1067567..1068361	-	264	53712183	-	BF0890	-	putative Sec-independent protein translocase
893	 39.04	0	1068438..1068665	-	75	53712184	-	BF0891	-	putative Sec-independent protein translocase
894	 47.00	0	1068827..1071373	-	848	53712185	-	BF0892	-	putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase
895	 45.29	0	1071352..1072338	-	328	53712186	-	BF0893	-	hypothetical protein
896	 46.59	0	1072223..1072471	-	82	53712187	-	BF0894	-	hypothetical protein
897	 32.68	-1	1072541..1072693	-	50	53712188	-	BF0895	-	hypothetical protein
898	 39.29	0	1072891..1073058	+	55	53712189	-	BF0896	-	hypothetical protein
899	 40.51	0	1073438..1073827	-	129	53712190	-	BF0897	-	hypothetical protein
900	 38.52	0	1074262..1074627	+	121	53712191	-	BF0898	-	hypothetical protein
901	 43.27	0	1074646..1076205	+	519	53712192	-	BF0899	-	hypothetical protein
902	 41.80	0	1076447..1078489	+	680	53712193	-	BF0900	-	hypothetical protein
903	 36.59	-1	1078585..1079721	-	378	53712194	-	BF0901	-	hypothetical protein
904	 37.82	0	1079767..1079922	+	51	53712195	-	BF0902	-	hypothetical protein
905	 43.71	0	1080062..1080967	-	301	53712196	miaA	BF0903	-	tRNA delta(2)-isopentenylpyrophosphate transferase
906	 40.06	0	1081064..1081732	-	222	53712197	-	BF0904	-	hypothetical protein
907	 44.53	0	1081761..1082528	-	255	53712198	-	BF0905	-	UDP-N-acetylglucosamine acyltransferase
908	 45.31	0	1082539..1083924	-	461	53712199	-	BF0906	-	bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.