IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
733	 37.50	-1	860265..860432	+	55	53712024	-	BF0731.4	-	hypothetical protein
734	 49.72	+1	860651..863836	+	1061	53712025	-	BF0732	-	hypothetical protein
735	 48.96	+1	863850..865532	+	560	53712026	-	BF0733	-	hypothetical protein
736	 52.28	+1	865542..866507	+	321	53712027	-	BF0734	-	exo-alpha-sialidase
737	 50.21	+1	866536..867987	+	483	53712028	-	BF0735	-	hypothetical protein
738	 48.55	0	868105..871659	+	1184	53712029	-	BF0736	-	beta-galactosidase
739	 48.99	+1	871805..873037	-	410	53712030	-	BF0737	-	3-phosphoshikimate 1-carboxyvinyltransferase
740	 40.30	0	873322..874197	+	291	53712031	-	BF0738	-	hypothetical protein
741	 43.42	0	874210..875379	+	389	53712032	-	BF0739	-	putative two-component system sensor histidine kinase
742	 44.39	0	875657..877618	+	653	53712033	-	BF0740	-	beta-N-acetylhexosaminidase
743	 41.87	0	877854..878942	-	362	53712034	-	BF0741	-	hypothetical protein
744	 44.19	0	879652..880047	-	131	53712035	-	BF0742	-	hypothetical protein
745	 45.67	0	880060..881121	-	353	53712036	-	BF0743	-	3-dehydroquinate synthase
746	 34.07	-1	881258..881662	+	134	53712037	-	BF0744	-	hypothetical protein
747	 42.43	0	881735..884647	+	970	53712038	-	BF0745	-	hypothetical protein
748	 43.68	0	884810..886249	+	479	53712039	-	BF0746	-	putative cardiolipin synthetase
749	 40.64	0	886267..886800	-	177	53712040	-	BF0747	-	putative methyltransferase
750	 39.25	0	886791..887585	-	264	53712041	-	BF0748	-	hypothetical protein
751	 40.79	0	887593..888276	-	227	53712042	-	BF0749	-	hypothetical protein
752	 43.06	0	888373..889791	+	472	53712043	-	BF0750	-	ATP-dependent exoDNAse alpha subunit
753	 46.54	0	889887..891620	-	577	53712044	-	BF0751	-	hypothetical protein
754	 45.62	0	891643..895059	-	1138	53712045	-	BF0752	-	hypothetical protein
755	 45.79	0	895305..897575	-	756	53712046	-	BF0753	-	putative alpha-1,2-mannosidase
756	 47.27	0	897678..899945	-	755	53712047	-	BF0754	-	putative alpha-1,2-mannosidase
757	 44.64	0	899975..900973	-	332	53712048	-	BF0755	-	putative anti-sigma factor
758	 46.31	0	901026..901580	-	184	53712049	-	BF0756	-	RNA polymerase ECF-type sigma factor
759	 45.87	0	901619..903835	-	738	53712050	-	BF0757	-	putative alpha-1,2-mannosidase
760	 40.65	0	903958..904203	-	81	53712051	-	BF0758	-	hypothetical protein
761	 46.15	0	904334..905527	-	397	53712052	-	BF0759	-	putative bicyclomycin resistance protein
762	 41.17	0	905677..906531	+	284	53712053	-	BF0760	-	transcriptional regulator
763	 47.46	0	906778..909396	-	872	53712054	alaS	BF0761	-	alanyl-tRNA synthetase
764	 47.68	0	909500..910468	+	322	53712055	-	BF0762	-	putative peptidase
765	 45.36	0	910483..910848	+	121	53712056	-	BF0763	-	transcriptional regulator
766	 46.08	0	910903..913146	-	747	53712057	-	BF0764	-	GTP pyrophosphokinase
767	 46.96	0	913215..914513	-	432	53712058	-	BF0765	-	membrane-bound lytic murein transglycosylase D presursor
768	 48.56	0	914538..915404	-	288	53712059	-	BF0766	-	hypothetical protein
769	 47.92	0	915405..916295	-	296	53712060	-	BF0767	-	putative chromosome partitioning protein ParB
770	 45.05	0	916304..917071	-	255	53712061	-	BF0768	-	ParA family ATPase
771	 32.89	-1	917334..917558	+	74	53712062	-	BF0769	-	hypothetical protein
772	 48.18	0	917576..918343	+	255	53712063	surE	BF0770	-	stationary phase survival protein SurE
773	 47.18	0	918340..919473	+	377	53712064	-	BF0771	-	lipid-A-disaccharide synthase
774	 44.62	0	919561..920304	+	247	53712065	-	BF0772	-	hypothetical protein
775	 44.40	0	920419..921258	-	279	53712066	-	BF0773	-	phosphatidate cytidylyltransferase
776	 46.62	0	921274..923268	-	664	53712067	-	BF0774	-	metalloprotease FtsH
777	 40.83	0	923317..923676	-	119	53712068	-	BF0775	-	hypothetical protein
778	 38.90	0	924341..926191	-	616	53712069	-	BF0776	-	hypothetical protein
779	 43.77	0	926310..927650	-	446	53712070	-	BF0777	-	putative Mg2+ transporter MgtE
780	 42.61	0	927751..928569	-	272	53712071	ksgA	BF0778	-	dimethyladenosine transferase
781	 40.72	0	928619..929620	+	333	53712072	-	BF0779	-	putative dolichol-P-glucose synthetase
782	 42.39	0	929787..931244	+	485	53712073	-	BF0780	-	aminoacyl-histidine dipeptidase
783	 30.72	-2	931712..931864	-	50	53712074	-	BF0781	-	hypothetical protein
784	 40.88	0	931898..933580	-	560	53712075	-	BF0782	-	hypothetical protein
785	 41.58	0	933602..934753	-	383	53712076	-	BF0783	-	hypothetical protein
786	 41.55	0	934758..937508	-	916	53712077	-	BF0784	-	hypothetical protein
787	 37.52	-1	937505..938245	-	246	53712078	-	BF0785	-	hypothetical protein
788	 43.26	0	938468..944248	+	1926	53712079	-	BF0786	-	hypothetical protein
789	 37.91	0	944342..944494	+	50	53712080	-	BF0787	-	hypothetical protein
790	 42.52	0	944515..945603	+	362	53712081	-	BF0788	-	hypothetical protein
791	 44.69	0	945612..946703	+	363	53712082	-	BF0789	-	arginine/ornithine transport system ATPase
792	 43.34	0	946735..947643	-	302	53712083	-	BF0790	-	hypothetical protein
793	 42.27	0	947737..948564	+	275	53712084	-	BF0791	-	putative ABC transporter ATP-binding protein
794	 40.41	0	948586..949602	+	338	53712085	-	BF0792	-	putative ABC transporter ATP-binding protein
795	 42.71	0	949574..950821	+	415	53712086	-	BF0793	-	putative membrane transport protein
796	 41.28	0	950863..951756	+	297	53712087	-	BF0794	-	putative transcriptional regulator
797	 35.73	-1	951759..952550	-	263	53712088	-	BF0795	-	hypothetical protein
798	 38.18	0	952658..952987	-	109	53712089	-	BF0796	-	hypothetical protein
799	 29.58	-2	952984..953196	-	70	53712090	-	BF0797	-	putative transcriptional regulator
800	 44.64	0	953609..953776	-	55	53712091	-	BF0798	-	hypothetical protein
801	 45.48	0	953686..954558	-	290	53712092	-	BF0799	-	hypothetical protein
802	 46.55	0	954701..955048	-	115	53712093	-	BF0800	-	hypothetical protein
803	 35.06	-1	955148..955378	-	76	53712094	-	BF0801	-	hypothetical protein
804	 29.17	-2	955392..955583	+	63	53712095	-	BF0802	-	hypothetical protein
805	 43.20	0	956096..956632	+	178	53712096	-	BF0803	-	putative transcriptional regulator UpxY-like protein
806	 49.69	+1	956652..957140	+	162	53712097	-	BF0804	-	hypothetical protein
807	 40.54	0	957305..958192	+	295	53712098	-	BF0805	-	glucose-1-phosphate thymidyltransferase
808	 33.86	-1	958195..958764	+	189	53712099	-	BF0806	-	dTDP-4-dehydrorhamnose 3,5-epimerase
809	 36.88	-1	958766..959836	+	356	53712100	-	BF0807	-	dTDP-glucose 4,6-dehydratase
810	 34.37	-1	959844..961292	+	482	53712101	-	BF0808	-	O-antigen repeat-containing transporter
811	 34.71	-1	961299..962681	+	460	53712102	-	BF0809	-	putative dNDP-4-keto-6-deoxy-glucose-2,3- dehydratase
812	 37.92	0	962686..963666	+	326	53712103	-	BF0810	-	NDP-hexose-3-ketoreductase
813	 37.12	-1	963653..964735	+	360	53712104	-	BF0811	-	aminotransferase
814	 32.38	-1	964749..965903	+	384	53712105	-	BF0812	-	hypothetical protein
815	 30.32	-2	965916..966779	+	287	53712106	-	BF0813	-	glycosyltransferase
816	 33.33	-1	966781..967797	+	338	53712107	-	BF0814	-	glycosyltransferase
817	 32.06	-1	967801..968898	+	365	53712108	-	BF0815	-	putative polysaccharide polymerase
818	 32.80	-1	968902..970023	+	373	53712109	-	BF0816	-	putative glycosyltransferase
819	 37.27	-1	970013..970621	+	202	53712110	-	BF0817	-	putative undecaprenyl-phosphate glycosyl-1-phosphate transferase
820	 32.71	-1	970625..971266	+	213	53712111	-	BF0818	-	serine O-acetyltransferase
821	 31.17	-2	971279..971509	+	76	53712112	-	BF0819	-	putative acyl carrier protein
822	 37.31	-1	971509..972564	+	351	53712113	-	BF0820	-	3-oxoacyl-[acyl carrier protein] synthase
823	 36.92	-1	972570..973322	+	250	53712114	-	BF0821	-	3-oxoacyl-[acyl-carrier-protein] reductase
824	 37.39	-1	973365..974375	+	336	53712115	-	BF0822	-	3-oxoacyl-[acyl-carrier-protein] synthase
825	 35.32	-1	974379..974780	+	133	53712116	-	BF0823	-	putative lactoylglutathione lyase
826	 35.16	-1	974791..976380	+	529	53712117	-	BF0824	-	hypothetical protein
827	 36.57	-1	976382..976597	+	71	53712118	-	BF0825	-	acyl carrier protein
828	 34.83	-1	976598..977197	+	199	53712119	-	BF0826	-	hypothetical protein
829	 48.77	0	977284..978417	+	377	53712120	-	BF0827	-	putative aminotransferase
830	 50.62	+1	978801..979280	+	159	53712121	-	BF0828	-	putative non-specific DNA binding protein
831	 42.94	0	979286..979462	-	58	53712122	-	BF0829	-	hypothetical protein
832	 41.21	0	979542..981089	+	515	53712123	-	BF0830	-	hypothetical protein
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.