IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
676	 48.69	0	800589..801734	+	381	53711967	-	BF0677	-	hypothetical protein
677	 49.61	+1	801759..803915	+	718	53711968	-	BF0678	-	alpha-N-acetylglucosaminidase precursor
678	 50.60	+1	804008..805675	-	555	53711969	-	BF0679	-	cationic amino acid transporter
679	 40.61	0	805898..806062	-	54	53711970	-	BF0681	-	hypothetical protein
680	 46.91	0	806203..807528	-	441	53711971	-	BF0682	-	putative outer membrane protein TolC
681	 48.85	+1	807525..810560	-	1011	53711972	-	BF0683	-	multidrug efflux membrane fusion protein
682	 46.63	0	810575..811657	-	360	53711973	-	BF0684	-	putative membrane fusion protein precursor
683	 28.21	-2	811795..811950	+	51	53711974	-	BF0685	-	hypothetical protein
684	 26.11	-2	812026..812745	-	239	53711975	-	BF0686	-	hypothetical protein
685	 39.61	0	813646..813900	-	84	53711976	-	BF0687	-	hypothetical protein
686	 45.12	0	813887..814819	-	310	53711977	-	BF0688	-	ribosome-associated GTPase
687	 46.35	0	814916..815476	-	186	53711978	frr	BF0689	-	ribosome recycling factor
688	 38.10	0	815603..816778	-	391	53711979	-	BF0690	-	hypothetical protein
689	 38.04	0	816673..817224	-	183	53711980	-	BF0691	-	hypothetical protein
690	 40.34	0	817235..820030	-	931	53711981	-	BF0692	-	hypothetical protein
691	 41.26	0	820058..821647	-	529	53711982	-	BF0693	-	chaperone protein DnaK
692	 38.16	0	821687..822535	-	282	53711983	-	BF0694	-	hypothetical protein
693	 36.95	-1	823612..824772	+	386	53711984	-	BF0695	-	hypothetical protein
694	 39.89	0	824797..824979	-	60	53711985	-	BF0696	-	hypothetical protein
695	 46.41	0	825020..825730	-	236	53711986	-	BF0697	-	uridylate kinase
696	 45.66	0	825779..827092	-	437	53711987	-	BF0698	-	DNA-damage-inducible protein F
697	 30.26	-2	827073..827267	+	64	53711988	-	BF0699	-	hypothetical protein
698	 39.23	0	827292..828614	+	440	53711989	-	BF0700	-	putative beta-glucanase precursor
699	 42.11	0	828729..829412	+	227	53711990	-	BF0701	-	hypothetical protein
700	 39.31	0	829439..830509	-	356	53711991	-	BF0702	-	hypothetical protein
701	 36.97	-1	830585..830749	-	54	53711992	-	BF0703	-	hypothetical protein
702	 41.93	0	830815..831570	-	251	53711993	-	BF0704	-	putative biotin-(acetyl-CoA carboxylase) synthetase
703	 40.62	0	831554..831910	-	118	53711994	-	BF0705	-	hypothetical protein
704	 43.72	0	831917..832282	-	121	53711995	-	BF0706	-	hypothetical protein
705	 40.60	0	832420..832653	+	77	53711996	-	BF0707	-	hypothetical protein
706	 47.26	0	832658..833095	+	145	53711997	-	BF0708	-	putative cytosine/adenosine deaminase
707	 39.58	0	833112..833399	-	95	53711998	-	BF0709	-	hypothetical protein
708	 39.94	0	833462..834172	-	236	53711999	-	BF0710	-	CDP-diacylglycerol-serine O-phosphatidyltransferase
709	 41.19	0	834182..834868	-	228	53712000	-	BF0711	-	phosphatidylserine decarboxylase
710	 44.12	0	834942..838826	+	1294	53712001	-	BF0712	-	DNA polymerase III alpha subunit
711	 39.05	0	838887..839201	+	104	53712002	-	BF0713	-	thioredoxin
712	 43.45	0	839228..839563	+	111	53712003	-	BF0714	-	hypothetical protein
713	 41.39	0	839786..840517	-	243	53712004	-	BF0715	-	hypothetical protein
714	 33.87	-1	840657..840842	-	61	53712005	-	BF0716	-	hypothetical protein
715	 43.41	0	841438..842400	+	320	53712006	-	BF0717	-	hypothetical protein
716	 42.55	0	842381..843313	+	310	53712007	-	BF0718	-	hypothetical protein
717	 45.51	0	843324..843947	+	207	53712008	-	BF0719	-	hypothetical protein
718	 46.63	0	843944..845191	+	415	53712009	-	BF0720	-	hypothetical protein
719	 47.69	0	845255..846250	+	331	53712010	-	BF0721	-	magnesium chelatase subunit I
720	 47.14	0	846253..847563	+	436	53712011	-	BF0722	-	hypothetical protein
721	 49.33	+1	847555..847779	-	74	53712012	-	BF0723	-	hypothetical protein
722	 45.95	0	847791..848210	-	139	53712013	-	BF0724	-	putative ATP/GTP hydrolase
723	 48.02	0	848225..849034	-	269	53712014	-	BF0725	-	zinc ABC transporter permease
724	 49.17	+1	849073..849495	-	140	53712015	-	BF0726	-	hypothetical protein
725	 46.91	0	849598..850599	+	333	53712016	-	BF0727	-	aminopeptidase
726	 48.42	0	850607..851779	+	390	53712017	-	BF0728	-	hypothetical protein
727	 52.06	+1	851930..854215	+	761	53712018	-	BF0729	-	alpha-1,2-mannosidase
728	 49.62	+1	854301..856922	+	873	53712019	-	BF0730	-	hypothetical protein
729	 43.78	0	856865..857266	-	133	53712020	-	BF0731	-	hypothetical protein
730	 48.46	0	857715..858071	+	118	53712021	-	BF0731.1	-	hypothetical protein
731	 43.72	0	858075..858440	+	121	53712022	-	BF0731.2	-	hypothetical protein
732	 50.00	+1	858516..860189	+	557	53712023	-	BF0731.3	-	IS66 family transposase
733	 37.50	-1	860265..860432	+	55	53712024	-	BF0731.4	-	hypothetical protein
734	 49.72	+1	860651..863836	+	1061	53712025	-	BF0732	-	hypothetical protein
735	 48.96	+1	863850..865532	+	560	53712026	-	BF0733	-	hypothetical protein
736	 52.28	+1	865542..866507	+	321	53712027	-	BF0734	-	exo-alpha-sialidase
737	 50.21	+1	866536..867987	+	483	53712028	-	BF0735	-	hypothetical protein
738	 48.55	0	868105..871659	+	1184	53712029	-	BF0736	-	beta-galactosidase
739	 48.99	+1	871805..873037	-	410	53712030	-	BF0737	-	3-phosphoshikimate 1-carboxyvinyltransferase
740	 40.30	0	873322..874197	+	291	53712031	-	BF0738	-	hypothetical protein
741	 43.42	0	874210..875379	+	389	53712032	-	BF0739	-	putative two-component system sensor histidine kinase
742	 44.39	0	875657..877618	+	653	53712033	-	BF0740	-	beta-N-acetylhexosaminidase
743	 41.87	0	877854..878942	-	362	53712034	-	BF0741	-	hypothetical protein
744	 44.19	0	879652..880047	-	131	53712035	-	BF0742	-	hypothetical protein
745	 45.67	0	880060..881121	-	353	53712036	-	BF0743	-	3-dehydroquinate synthase
746	 34.07	-1	881258..881662	+	134	53712037	-	BF0744	-	hypothetical protein
747	 42.43	0	881735..884647	+	970	53712038	-	BF0745	-	hypothetical protein
748	 43.68	0	884810..886249	+	479	53712039	-	BF0746	-	putative cardiolipin synthetase
749	 40.64	0	886267..886800	-	177	53712040	-	BF0747	-	putative methyltransferase
750	 39.25	0	886791..887585	-	264	53712041	-	BF0748	-	hypothetical protein
751	 40.79	0	887593..888276	-	227	53712042	-	BF0749	-	hypothetical protein
752	 43.06	0	888373..889791	+	472	53712043	-	BF0750	-	ATP-dependent exoDNAse alpha subunit
753	 46.54	0	889887..891620	-	577	53712044	-	BF0751	-	hypothetical protein
754	 45.62	0	891643..895059	-	1138	53712045	-	BF0752	-	hypothetical protein
755	 45.79	0	895305..897575	-	756	53712046	-	BF0753	-	putative alpha-1,2-mannosidase
756	 47.27	0	897678..899945	-	755	53712047	-	BF0754	-	putative alpha-1,2-mannosidase
757	 44.64	0	899975..900973	-	332	53712048	-	BF0755	-	putative anti-sigma factor
758	 46.31	0	901026..901580	-	184	53712049	-	BF0756	-	RNA polymerase ECF-type sigma factor
759	 45.87	0	901619..903835	-	738	53712050	-	BF0757	-	putative alpha-1,2-mannosidase
760	 40.65	0	903958..904203	-	81	53712051	-	BF0758	-	hypothetical protein
761	 46.15	0	904334..905527	-	397	53712052	-	BF0759	-	putative bicyclomycin resistance protein
762	 41.17	0	905677..906531	+	284	53712053	-	BF0760	-	transcriptional regulator
763	 47.46	0	906778..909396	-	872	53712054	alaS	BF0761	-	alanyl-tRNA synthetase
764	 47.68	0	909500..910468	+	322	53712055	-	BF0762	-	putative peptidase
765	 45.36	0	910483..910848	+	121	53712056	-	BF0763	-	transcriptional regulator
766	 46.08	0	910903..913146	-	747	53712057	-	BF0764	-	GTP pyrophosphokinase
767	 46.96	0	913215..914513	-	432	53712058	-	BF0765	-	membrane-bound lytic murein transglycosylase D presursor
768	 48.56	0	914538..915404	-	288	53712059	-	BF0766	-	hypothetical protein
769	 47.92	0	915405..916295	-	296	53712060	-	BF0767	-	putative chromosome partitioning protein ParB
770	 45.05	0	916304..917071	-	255	53712061	-	BF0768	-	ParA family ATPase
771	 32.89	-1	917334..917558	+	74	53712062	-	BF0769	-	hypothetical protein
772	 48.18	0	917576..918343	+	255	53712063	surE	BF0770	-	stationary phase survival protein SurE
773	 47.18	0	918340..919473	+	377	53712064	-	BF0771	-	lipid-A-disaccharide synthase
774	 44.62	0	919561..920304	+	247	53712065	-	BF0772	-	hypothetical protein
775	 44.40	0	920419..921258	-	279	53712066	-	BF0773	-	phosphatidate cytidylyltransferase
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.