IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4046	 32.20	-1	4632681..4633910	-	409	53715337	-	BF4053	-	glycosyltransferase
4047	 35.06	-1	4633907..4634602	-	231	53715338	-	BF4054	-	hypothetical protein
4048	 35.94	-1	4634571..4635338	-	255	53715339	-	BF4055	-	hypothetical protein
4049	 36.47	-1	4635335..4635940	-	201	53715340	-	BF4056	-	hypothetical protein
4050	 36.90	-1	4635955..4636431	-	158	53715341	-	BF4057	-	hypothetical protein
4051	 37.82	0	4636523..4638307	-	594	53715342	-	BF4058	-	hypothetical protein
4052	 29.41	-2	4638384..4638536	-	50	53715343	-	BF4059	-	hypothetical protein
4053	 40.85	0	4638688..4639206	+	172	53715344	-	BF4060	-	transposase
4054	 28.62	-2	4639330..4639626	+	98	53715345	-	BF4061	-	hypothetical protein
4055	 38.10	0	4639795..4641012	-	405	53715346	-	BF4062	-	hypothetical protein
4056	 36.78	-1	4641240..4642514	-	424	53715347	-	BF4063	-	hypothetical protein
4057	 38.71	0	4642628..4643872	-	414	53715348	-	BF4064	-	hypothetical protein
4058	 36.49	-1	4643897..4645162	-	421	53715349	-	BF4065	-	hypothetical protein
4059	 37.42	-1	4645394..4646617	-	407	53715350	-	BF4066	-	hypothetical protein
4060	 34.35	-1	4646856..4647149	+	97	53715351	-	BF4067	-	hypothetical protein
4061	 38.80	0	4647161..4647526	+	121	53715352	-	BF4068	-	hypothetical protein
4062	 48.51	0	4648068..4649945	-	625	53715353	-	BF4069	-	DNA mismatch repair protein MutL
4063	 44.11	0	4649982..4650278	-	98	53715354	-	BF4070	-	hypothetical protein
4064	 44.13	0	4650281..4651984	-	567	53715355	-	BF4071	-	hypothetical protein
4065	 45.88	0	4651997..4653367	-	456	53715356	-	BF4072	-	peptidyl-prolyl cis-trans isomerase
4066	 44.25	0	4653377..4654219	-	280	53715357	-	BF4073	-	hypothetical protein
4067	 45.82	0	4654276..4655829	-	517	53715358	-	BF4074	-	peptidyl-prolyl cis-trans isomerase
4068	 48.37	0	4655974..4657449	-	491	53715359	-	BF4075	-	inosine-5'-monophosphate dehydrogenase
4069	 45.48	0	4657536..4659716	-	726	53715360	-	BF4076	-	ATP-dependent DNA helicase RecQ
4070	 48.32	0	4659887..4661134	-	415	53715361	clpX	BF4077	-	ATP-dependent protease ATP-binding subunit
4071	 46.00	0	4661137..4661799	-	220	53715362	-	BF4078	-	ATP-dependent Clp protease proteolytic subunit 2
4072	 43.58	0	4661937..4663292	-	451	53715363	-	BF4079	-	FKBP-type peptidyl-prolyl cis-transisomerase
4073	 44.19	0	4663389..4664042	-	217	53715364	-	BF4080	-	hypothetical protein
4074	 34.22	-1	4664168..4664392	+	74	53715365	-	BF4081	-	hypothetical protein
4075	 44.31	0	4664532..4664777	+	81	53715366	-	BF4082	-	putative RNA-binding protein RbpA
4076	 46.59	0	4664896..4665657	-	253	53715367	-	BF4083	-	ABC transporter ATP-binding protein
4077	 47.18	0	4665733..4666476	+	247	53715368	-	BF4084	-	hypothetical protein
4078	 45.40	0	4666473..4667243	+	256	53715369	-	BF4085	-	ABC transporter ATP-binding protein
4079	 43.21	0	4667475..4668122	-	215	53715370	-	BF4086	-	putative transcriptional regulator
4080	 42.54	0	4668299..4669612	-	437	53715371	engA	BF4087	-	GTP-binding protein EngA
4081	 40.02	0	4669665..4670546	-	293	53715372	era	BF4088	-	GTP-binding protein Era
4082	 42.19	0	4670634..4671638	-	334	53715373	-	BF4089	-	3-oxoacyl-(acyl carrier protein) synthase III
4083	 41.94	0	4671736..4671921	-	61	53715374	rpmF	BF4090	-	50S ribosomal protein L32
4084	 40.97	0	4671935..4672471	-	178	53715375	-	BF4091	-	hypothetical protein
4085	 43.61	0	4680143..4681096	+	317	53715376	-	BF4092	-	5,10-methylenetetrahydrofolate reductase
4086	 44.32	0	4681100..4682209	+	369	53715377	-	BF4093	-	putative DNA polymerase III delta subunit
4087	 45.70	0	4682226..4683680	+	484	53715378	-	BF4094	-	hypothetical protein
4088	 44.16	0	4683658..4684128	+	156	53715379	-	BF4095	-	hypothetical protein
4089	 43.69	0	4684123..4685580	-	485	53715380	-	BF4096	-	rod shape-determining protein RodA
4090	 45.18	0	4685561..4687417	-	618	53715381	-	BF4097	-	penicillin-binding protein 2
4091	 40.56	0	4687420..4687917	-	165	53715382	-	BF4098	-	hypothetical protein
4092	 42.79	0	4687914..4688759	-	281	53715383	-	BF4099	-	rod shape-determining protein MreC
4093	 47.02	0	4688861..4689883	-	340	53715384	-	BF4100	-	rod shape-determining protein MreB
4094	 43.83	0	4689958..4691481	-	507	53715385	purH	BF4101	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
4095	 45.72	0	4691633..4693666	-	677	53715386	-	BF4102	-	putative endothelin-converting enzyme
4096	 45.45	0	4693682..4695637	-	651	53715387	-	BF4103	-	ABC transporter ATP-binding protein
4097	 48.60	0	4695865..4698255	-	796	53715388	-	BF4104	-	hypothetical protein
4098	 41.07	0	4698465..4698632	-	55	53715389	-	BF4105	-	hypothetical protein
4099	 38.18	0	4698818..4698982	-	54	53715390	-	BF4106	-	hypothetical protein
4100	 46.51	0	4699132..4700034	-	300	53715391	-	BF4107	-	hypothetical protein
4101	 48.51	0	4700161..4702512	-	783	53715392	-	BF4108	-	hypothetical protein
4102	 48.40	0	4702540..4707084	-	1514	53715393	-	BF4109	-	hypothetical protein
4103	 47.76	0	4707198..4709498	-	766	53715394	-	BF4110	-	two-component system sensor histidine kinase
4104	 43.82	0	4709502..4710827	-	441	53715395	-	BF4111	-	putative multidrug efflux protein
4105	 45.68	0	4710811..4712073	-	420	53715396	-	BF4112	-	putative zinc protease
4106	 40.00	0	4712076..4712915	-	279	53715397	-	BF4113	-	cyclophilin-type peptidyl-prolyl cis-trans isomerase
4107	 45.01	0	4713009..4714352	+	447	53715398	-	BF4114	-	two-component system response regulator
4108	 35.80	-1	4714366..4714527	+	53	53715399	-	BF4115	-	hypothetical protein
4109	 36.14	-1	4714565..4714849	+	94	53715400	-	BF4116	-	hypothetical protein
4110	 42.94	0	4714998..4715663	-	221	53715401	-	BF4117	-	ribosomal large subunit pseudouridine synthase D
4111	 43.24	0	4715672..4716418	-	248	53715402	-	BF4118	-	3-oxoacyl-[acyl-carrier protein] reductase
4112	 39.87	0	4716431..4717027	-	198	53715403	-	BF4119	-	transcriptional regulator
4113	 39.87	0	4717386..4717538	-	50	53715404	-	BF4120	-	hypothetical protein
4114	 45.67	0	4717829..4719352	-	507	53715405	-	BF4121	-	hypothetical protein
4115	 33.46	-1	4719485..4720258	-	257	53715406	-	BF4122	-	hypothetical protein
4116	 38.98	0	4720255..4721157	-	300	53715407	-	BF4123	-	ABC transporter
4117	 39.57	0	4721145..4722458	-	437	53715408	-	BF4124	-	hypothetical protein
4118	 40.35	0	4722557..4723354	-	265	53715409	-	BF4125	-	hypothetical protein
4119	 39.84	0	4723367..4723735	-	122	53715410	-	BF4126	-	putative transcriptional regulator
4120	 38.97	0	4723751..4724566	-	271	53715411	-	BF4127	-	hypothetical protein
4121	 40.65	0	4724563..4725423	-	286	53715412	-	BF4128	-	putative ABC transporter ATP-binding protein
4122	 42.33	0	4725729..4727162	-	477	53715413	-	BF4129	-	TPR repeat-containing protein
4123	 45.99	0	4727182..4728129	-	315	53715414	-	BF4130	-	putative phosphate ABC transporter phosphate-binding component
4124	 44.00	0	4728132..4728947	-	271	53715415	-	BF4131	-	TonB
4125	 39.63	0	4728977..4729627	-	216	53715416	-	BF4132	-	hypothetical protein
4126	 42.41	0	4729640..4730245	-	201	53715417	-	BF4133	-	hypothetical protein
4127	 40.59	0	4730273..4731085	-	270	53715418	-	BF4134	-	MotA/TolQ/ExbB proton channel
4128	 36.94	-1	4731225..4731668	-	147	53715419	-	BF4135	-	hypothetical protein
4129	 43.11	0	4739245..4740738	-	497	53715420	-	BF4136	-	alginate O-acetylation protein
4130	 48.49	0	4740719..4741648	-	309	53715421	-	BF4137	-	putative periplasmic protein
4131	 47.23	0	4741602..4742975	-	457	53715422	-	BF4138	-	putative periplasmic protein
4132	 51.36	+1	4743092..4743385	-	97	53715423	-	BF4139	-	hypothetical protein
4133	 47.61	0	4743404..4746562	-	1052	53715424	-	BF4140	-	putative cation efflux transporter
4134	 46.61	0	4746663..4747679	-	338	53715425	-	BF4141	-	cation efflux system protein
4135	 46.78	0	4747708..4749060	-	450	53715426	-	BF4142	-	outer membrane efflux protein
4136	 40.47	0	4749111..4749755	-	214	53715427	-	BF4143	-	putative transcriptional regulator
4137	 48.56	0	4750066..4751562	-	498	53715428	-	BF4144	-	histidine ammonia-lyase
4138	 50.16	+1	4751559..4752188	-	209	53715429	-	BF4145	-	methenyltetrahydrofolate cyclohydrolase
4139	 50.80	+1	4752223..4753476	-	417	53715430	-	BF4146	-	imidazolonepropionase
4140	 50.28	+1	4753483..4754385	-	300	53715431	-	BF4147	-	formiminotransferase-cyclodeaminase
4141	 50.70	+1	4754454..4756439	-	661	53715432	-	BF4148	-	urocanate hydratase
4142	 47.71	0	4756638..4757270	-	210	53715433	-	BF4149	-	hypothetical protein
4143	 40.56	0	4757664..4757843	+	59	53715434	-	BF4150	-	hypothetical protein
4144	 44.85	0	4757831..4759645	+	604	53715435	-	BF4151	-	DNA mismatch repair protein MutS
4145	 42.04	0	4759677..4760216	-	179	53715436	-	BF4152	-	hypothetical protein
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.