IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3474	 33.07	-1	3974684..3975817	-	377	53714765	-	BF3480	-	putative transcriptional regulator
3475	 34.73	-1	3975857..3976285	-	142	53714766	-	BF3481	-	hypothetical protein
3476	 37.58	-1	3976456..3976620	+	54	53714767	-	BF3482	-	hypothetical protein
3477	 26.75	-2	3976650..3977378	+	242	53714768	-	BF3483	-	hypothetical protein
3478	 40.48	0	3977399..3977944	+	181	53714769	-	BF3484	-	hypothetical protein
3479	 39.26	0	3977949..3978809	+	286	53714770	-	BF3485	-	hypothetical protein
3480	 28.67	-2	3978820..3979998	-	392	53714771	-	BF3486	-	hypothetical protein
3481	 38.03	0	3980310..3980948	-	212	53714772	-	BF3487	-	phosphoglycolate phosphatase
3482	 40.87	0	3980926..3981549	-	207	53714773	-	BF3488	-	galactoside O-acetyltransferase
3483	 40.20	0	3981570..3982079	-	169	53714774	-	BF3489	-	nitroreductase family protein
3484	 34.76	-1	3982192..3983031	+	279	53714775	-	BF3490	-	transcription regulator
3485	 38.08	0	3983065..3987132	-	1355	53714776	-	BF3491	-	two-component system sensor histidine kinase/response regulator hybrid
3486	 40.41	0	3987348..3989297	-	649	53714777	-	BF3492	-	putative alpha-glucosidase
3487	 43.16	0	3989517..3991481	+	654	53714778	-	BF3493	-	sialic acid-specific 9-O-acetylesterase
3488	 39.55	0	3991595..3993187	-	530	53714779	-	BF3494	-	hypothetical protein
3489	 40.73	0	3993193..3994179	-	328	53714780	-	BF3495	-	hypothetical protein
3490	 46.03	0	3994272..3996137	-	621	53714781	-	BF3496	-	hypothetical protein
3491	 44.07	0	3996158..3999313	-	1051	53714782	-	BF3497	-	hypothetical protein
3492	 38.17	0	3999444..4000643	-	399	53714783	-	BF3498	-	putative alpha-1,6-mannanase
3493	 34.59	-1	4000865..4001023	+	52	53714784	-	BF3499	-	hypothetical protein
3494	 42.54	0	4001229..4001771	+	180	53714785	-	BF3500	-	putative acetyltransferase
3495	 39.32	0	4001779..4003065	-	428	53714786	-	BF3501	-	putative cation effux pump BexA
3496	 38.23	0	4003374..4003700	+	108	53714787	-	BF3502	-	hypothetical protein
3497	 40.12	0	4003808..4004470	+	220	53714788	-	BF3503	-	uracil-DNA glycosylase
3498	 40.21	0	4004556..4005413	+	285	53714789	-	BF3504	-	AraC family transcription regulator
3499	 36.93	-1	4005694..4007583	+	629	53714790	-	BF3505	-	hypothetical protein
3500	 41.50	0	4007766..4008365	+	199	53714791	-	BF3506	-	hypothetical protein
3501	 39.51	0	4008602..4009330	-	242	53714792	-	BF3507	-	hypothetical protein
3502	 36.56	-1	4009574..4010038	-	154	53714793	-	BF3508	-	hypothetical protein
3503	 34.34	-1	4010102..4010497	-	131	53714794	-	BF3509	-	hypothetical protein
3504	 38.66	0	4010507..4011445	-	312	53714795	-	BF3510	-	hypothetical protein
3505	 44.10	0	4012304..4013083	+	259	53714796	-	BF3511	-	7-alpha-hydroxysteroid dehydrogenase
3506	 45.61	0	4013487..4016492	-	1001	53714797	-	BF3512	-	hypothetical protein
3507	 42.73	0	4016522..4017085	-	187	53714798	-	BF3513	-	hypothetical protein
3508	 38.57	0	4017082..4017444	-	120	53714799	-	BF3514	-	hypothetical protein
3509	 47.01	0	4017463..4018098	-	211	53714800	-	BF3515	-	hypothetical protein
3510	 44.86	0	4018126..4019895	-	589	53714801	-	BF3516	-	hypothetical protein
3511	 43.20	0	4019917..4021659	-	580	53714802	-	BF3517	-	hypothetical protein
3512	 46.12	0	4021638..4023404	-	588	53714803	-	BF3518	-	hypothetical protein
3513	 46.18	0	4023450..4024352	-	300	53714804	-	BF3519	-	putative lipoprotein
3514	 42.32	0	4024479..4025747	-	422	53714805	-	BF3520	-	hypothetical protein
3515	 36.29	-1	4026045..4026923	+	292	53714806	-	BF3521	-	AraC family transcription regulator
3516	 39.52	0	4027086..4028297	-	403	53714807	-	BF3522	-	tyrosine type site-specific recombinase
3517	 35.18	-1	4028730..4029596	-	288	53714808	-	BF3523	-	AraC family transcription regulator
3518	 46.62	0	4029826..4030992	+	388	53714809	-	BF3524	-	nicotinate phosphoribosyltransferase
3519	 42.74	0	4031016..4032227	-	403	53714810	-	BF3525	-	thiol:disulfide interchange protein
3520	 29.63	-2	4032358..4032519	+	53	53714811	-	BF3526	-	hypothetical protein
3521	 46.71	0	4032976..4035240	-	754	53714812	-	BF3527	-	putative Na+/H+ antiporter
3522	 40.90	0	4035249..4035605	+	118	53714813	-	BF3528	-	hypothetical protein
3523	 51.16	+1	4035781..4037295	+	504	53714814	-	BF3529	-	pyruvate carboxylase subunit A
3524	 49.70	+1	4037300..4037800	+	166	53714815	-	BF3530	-	putative methylmalonyl-CoA decarboxylase biotin carboxyl carrier subunit
3525	 52.80	+1	4037820..4039355	+	511	53714816	-	BF3531	-	propionyl-CoA carboxylase beta chain
3526	 49.40	+1	4039460..4040131	-	223	53714817	-	BF3532	-	putative isochorismatase
3527	 41.67	0	4040147..4040386	-	79	53714818	-	BF3533	-	hypothetical protein
3528	 51.30	+1	4040529..4042142	+	537	53714819	-	BF3534	-	putative peptidase
3529	 37.65	0	4042219..4042380	-	53	53714820	-	BF3535	-	hypothetical protein
3530	 49.40	+1	4042538..4044031	-	497	53714821	-	BF3536	-	inositol-5-monophosphate dehydrogenase
3531	 44.79	0	4044262..4044549	-	95	53714822	-	BF3537	-	hypothetical protein
3532	 44.14	0	4044739..4044960	+	73	53714823	-	BF3538	-	hypothetical protein
3533	 46.11	0	4044985..4045563	-	192	53714824	-	BF3539	-	transcriptional regulator
3534	 45.90	0	4045648..4045830	-	60	53714825	-	BF3540	-	transcriptional regulator
3535	 52.13	+1	4045981..4046895	+	304	53714826	-	BF3541	-	multidrug efflux protein
3536	 50.90	+1	4046810..4047088	+	92	53714827	-	BF3542	-	multidrug efflux protein
3537	 51.61	+1	4047171..4050377	+	1068	53714828	-	BF3543	-	AcrB/AcrD family multidrug resistance protein
3538	 55.32	+2	4050388..4051815	+	475	53714829	-	BF3544	-	multidrug efflux pump channel protein
3539	 51.60	+1	4051964..4053244	-	426	53714830	-	BF3545	-	O-acetylhomoserine (thiol)-lyase
3540	 52.93	+1	4053414..4054454	+	346	53714831	-	BF3546	-	putative N-acetylmuramoyl-L-alanine amidase
3541	 53.29	+1	4054582..4055538	+	318	53714832	-	BF3547	-	putative homocysteine S-methyltransferase
3542	 53.61	+1	4055586..4056581	-	331	53714833	-	BF3548	-	hypothetical protein
3543	 53.41	+1	4056738..4057001	+	87	53714834	-	BF3549	-	hypothetical protein
3544	 46.74	0	4057103..4057378	+	91	53714835	-	BF3550	-	hypothetical protein
3545	 46.44	0	4057673..4058107	+	144	53714836	-	BF3551	-	hypothetical protein
3546	 42.93	0	4058176..4058373	+	65	53714837	-	BF3552	-	hypothetical protein
3547	 37.36	-1	4058495..4058668	+	57	53714838	-	BF3553	-	hypothetical protein
3548	 36.22	-1	4058599..4058910	-	103	53714839	-	BF3554	-	hypothetical protein
3549	 43.23	0	4058909..4061221	+	770	53714840	-	BF3555	-	putative ABC-transporter permease protein
3550	 43.39	0	4061296..4061484	-	62	53714841	-	BF3556	-	hypothetical protein
3551	 50.66	+1	4061511..4062197	-	228	53714842	-	BF3557	-	haloacid dehalogenase-like family hydrolase
3552	 52.58	+1	4062386..4063258	+	290	53714843	-	BF3558	-	hypothetical protein
3553	 52.05	+1	4063290..4064165	+	291	53714844	-	BF3559	-	hypothetical protein
3554	 49.68	+1	4064166..4064954	-	262	53714845	-	BF3560	-	hypothetical protein
3555	 53.73	+1	4065301..4066947	-	548	53714846	-	BF3561	-	putative cation efflux system transmembrane protein
3556	 52.59	+1	4066979..4068484	-	501	53714847	-	BF3562	-	hypothetical protein
3557	 48.74	0	4068664..4072422	-	1252	53714848	-	BF3563	-	putative cation efflux system transmembrane protein
3558	 44.10	0	4072615..4073004	-	129	53714849	-	BF3564	-	hypothetical protein
3559	 45.69	0	4073069..4074112	+	347	53714850	-	BF3565	-	putative membrane-bound lytic murein transglycosylase
3560	 43.00	0	4074157..4075056	+	299	53714851	-	BF3566	-	voltage-gated K+ channel protein
3561	 42.46	0	4075046..4080919	-	1957	53714852	-	BF3567	-	putative DNA helicase
3562	 33.60	-1	4081038..4081409	-	123	53714853	-	BF3568	-	hypothetical protein
3563	 42.75	0	4081634..4082302	+	222	53714854	-	BF3569	-	hypothetical protein
3564	 41.18	0	4082305..4083120	-	271	53714855	-	BF3570	-	hypothetical protein
3565	 43.76	0	4083086..4084351	-	421	53714856	-	BF3571	-	hypothetical protein
3566	 40.67	0	4084348..4085247	-	299	53714857	-	BF3572	-	putative transcriptional regulator
3567	 40.79	0	4085419..4086504	+	361	53714858	-	BF3573	-	bifunctional methionine sulfoxide reductase A/B protein
3568	 35.59	-1	4086668..4086844	-	58	53714859	-	BF3574	-	hypothetical protein
3569	 43.30	0	4086993..4087634	+	213	53714860	-	BF3575	-	putative ATP-dependent DNA helicase
3570	 45.29	0	4087670..4089049	+	459	53714861	-	BF3576	-	amino acid carrier protein
3571	 41.78	0	4089150..4089788	+	212	53714862	-	BF3577	-	hypothetical protein
3572	 44.24	0	4089922..4092021	+	699	53714863	-	BF3578	-	hypothetical protein
3573	 43.74	0	4092112..4093437	-	441	53714864	-	BF3579	-	putative purine permease
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.