IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3431	 44.40	0	3929032..3932211	-	1059	53714722	-	BF3437	-	hypothetical protein
3432	 36.36	-1	3932366..3932530	+	54	53714723	-	BF3438	-	hypothetical protein
3433	 30.45	-2	3932631..3932873	+	80	53714724	-	BF3439	-	hypothetical protein
3434	 38.97	0	3933084..3934094	-	336	53714725	-	BF3440	-	putative UDP-glucuronic acid epimerase
3435	 41.51	0	3934108..3935661	-	517	53714726	-	BF3441	-	dolichyl-phosphate-mannose-protein mannosyltransferase family protein
3436	 39.97	0	3935651..3936298	-	215	53714727	-	BF3442	-	putative lipid-A-disaccharide synthase
3437	 40.41	0	3936303..3937037	-	244	53714728	-	BF3443	-	dolichol-phosphate mannosyltransferase
3438	 45.20	0	3937255..3938316	-	353	53714729	-	BF3444	-	3-isopropylmalate dehydrogenase
3439	 44.51	0	3938329..3939858	-	509	53714730	-	BF3445	-	2-isopropylmalate synthase LeuA
3440	 39.59	0	3939837..3940427	-	196	53714731	-	BF3446	-	3-isopropylmalate dehydratase small subunit LeuD
3441	 46.45	0	3940540..3941934	-	464	53714732	-	BF3447	-	isopropylmalate isomerase large subunit
3442	 43.15	0	3941982..3943478	-	498	53714733	-	BF3448	-	2-isopropylmalate synthase
3443	 39.93	0	3943880..3944152	-	90	53714734	-	BF3449	-	hypothetical protein
3444	 40.94	0	3950778..3951290	+	170	53714735	-	BF3450	-	hypothetical protein
3445	 43.11	0	3951528..3953306	+	592	53714736	-	BF3451	-	protease IV
3446	 43.24	0	3953315..3954445	+	376	53714737	-	BF3452	-	tetraacyldisaccharide 4'-kinase
3447	 45.31	0	3954384..3955193	+	269	53714738	-	BF3453	-	purine nucleoside phosphorylase
3448	 45.12	0	3955221..3956255	+	344	53714739	-	BF3454	-	putative thiamine-monophosphate kinase
3449	 39.15	0	3956548..3957750	+	400	53714740	-	BF3455	-	tyrosine type site-specific recombinase
3450	 26.39	-2	3957832..3958623	+	263	53714741	-	BF3456	-	hypothetical protein
3451	 35.55	-1	3958672..3959529	+	285	53714742	-	BF3457	-	hypothetical protein
3452	 36.11	-1	3959748..3959963	+	71	53714743	-	BF3458	-	hypothetical protein
3453	 38.32	0	3960132..3961034	+	300	53714744	-	BF3459	-	hypothetical protein
3454	 35.54	-1	3961172..3962578	+	468	53714745	-	BF3460	-	hypothetical protein
3455	 33.56	-1	3962566..3963003	+	145	53714746	-	BF3461	-	hypothetical protein
3456	 38.91	0	3963402..3964424	+	340	53714747	-	BF3462	-	hypothetical protein
3457	 32.18	-1	3964537..3964710	-	57	53714748	-	BF3463	-	hypothetical protein
3458	 31.63	-2	3964746..3965333	+	195	53714749	-	BF3464	-	tyrosine type site-specific recombinase
3459	 30.47	-2	3965587..3965865	+	92	53714750	-	BF3465	-	hypothetical protein
3460	 34.39	-1	3966524..3966994	+	156	53714751	-	BF3466	-	hypothetical protein
3461	 32.19	-1	3967006..3967530	+	174	53714752	-	BF3467	-	hypothetical protein
3462	 33.67	-1	3967543..3967836	+	97	53714753	-	BF3468	-	hypothetical protein
3463	 31.34	-2	3967850..3968200	+	116	53714754	-	BF3469	-	hypothetical protein
3464	 32.09	-1	3968190..3968591	+	133	53714755	-	BF3470	-	hypothetical protein
3465	 39.18	0	3968615..3969469	+	284	53714756	-	BF3471	-	penicillin-binding protein 2B
3466	 34.75	-1	3969469..3970104	+	211	53714757	-	BF3472	-	hypothetical protein
3467	 34.76	-1	3970125..3970544	+	139	53714758	-	BF3473	-	hypothetical protein
3468	 28.59	-2	3970788..3972284	+	498	53714759	-	BF3474	-	hypothetical protein
3469	 27.98	-2	3972294..3972461	+	55	53714760	-	BF3475	-	hypothetical protein
3470	 42.51	0	3973061..3973387	+	108	53714761	-	BF3476	-	transposase
3471	 42.38	0	3973506..3973925	-	139	53714762	-	BF3477	-	hypothetical protein
3472	 37.92	0	3973903..3974142	-	79	53714763	-	BF3478	-	hypothetical protein
3473	 36.25	-1	3974211..3974621	-	136	53714764	-	BF3479	-	hypothetical protein
3474	 33.07	-1	3974684..3975817	-	377	53714765	-	BF3480	-	putative transcriptional regulator
3475	 34.73	-1	3975857..3976285	-	142	53714766	-	BF3481	-	hypothetical protein
3476	 37.58	-1	3976456..3976620	+	54	53714767	-	BF3482	-	hypothetical protein
3477	 26.75	-2	3976650..3977378	+	242	53714768	-	BF3483	-	hypothetical protein
3478	 40.48	0	3977399..3977944	+	181	53714769	-	BF3484	-	hypothetical protein
3479	 39.26	0	3977949..3978809	+	286	53714770	-	BF3485	-	hypothetical protein
3480	 28.67	-2	3978820..3979998	-	392	53714771	-	BF3486	-	hypothetical protein
3481	 38.03	0	3980310..3980948	-	212	53714772	-	BF3487	-	phosphoglycolate phosphatase
3482	 40.87	0	3980926..3981549	-	207	53714773	-	BF3488	-	galactoside O-acetyltransferase
3483	 40.20	0	3981570..3982079	-	169	53714774	-	BF3489	-	nitroreductase family protein
3484	 34.76	-1	3982192..3983031	+	279	53714775	-	BF3490	-	transcription regulator
3485	 38.08	0	3983065..3987132	-	1355	53714776	-	BF3491	-	two-component system sensor histidine kinase/response regulator hybrid
3486	 40.41	0	3987348..3989297	-	649	53714777	-	BF3492	-	putative alpha-glucosidase
3487	 43.16	0	3989517..3991481	+	654	53714778	-	BF3493	-	sialic acid-specific 9-O-acetylesterase
3488	 39.55	0	3991595..3993187	-	530	53714779	-	BF3494	-	hypothetical protein
3489	 40.73	0	3993193..3994179	-	328	53714780	-	BF3495	-	hypothetical protein
3490	 46.03	0	3994272..3996137	-	621	53714781	-	BF3496	-	hypothetical protein
3491	 44.07	0	3996158..3999313	-	1051	53714782	-	BF3497	-	hypothetical protein
3492	 38.17	0	3999444..4000643	-	399	53714783	-	BF3498	-	putative alpha-1,6-mannanase
3493	 34.59	-1	4000865..4001023	+	52	53714784	-	BF3499	-	hypothetical protein
3494	 42.54	0	4001229..4001771	+	180	53714785	-	BF3500	-	putative acetyltransferase
3495	 39.32	0	4001779..4003065	-	428	53714786	-	BF3501	-	putative cation effux pump BexA
3496	 38.23	0	4003374..4003700	+	108	53714787	-	BF3502	-	hypothetical protein
3497	 40.12	0	4003808..4004470	+	220	53714788	-	BF3503	-	uracil-DNA glycosylase
3498	 40.21	0	4004556..4005413	+	285	53714789	-	BF3504	-	AraC family transcription regulator
3499	 36.93	-1	4005694..4007583	+	629	53714790	-	BF3505	-	hypothetical protein
3500	 41.50	0	4007766..4008365	+	199	53714791	-	BF3506	-	hypothetical protein
3501	 39.51	0	4008602..4009330	-	242	53714792	-	BF3507	-	hypothetical protein
3502	 36.56	-1	4009574..4010038	-	154	53714793	-	BF3508	-	hypothetical protein
3503	 34.34	-1	4010102..4010497	-	131	53714794	-	BF3509	-	hypothetical protein
3504	 38.66	0	4010507..4011445	-	312	53714795	-	BF3510	-	hypothetical protein
3505	 44.10	0	4012304..4013083	+	259	53714796	-	BF3511	-	7-alpha-hydroxysteroid dehydrogenase
3506	 45.61	0	4013487..4016492	-	1001	53714797	-	BF3512	-	hypothetical protein
3507	 42.73	0	4016522..4017085	-	187	53714798	-	BF3513	-	hypothetical protein
3508	 38.57	0	4017082..4017444	-	120	53714799	-	BF3514	-	hypothetical protein
3509	 47.01	0	4017463..4018098	-	211	53714800	-	BF3515	-	hypothetical protein
3510	 44.86	0	4018126..4019895	-	589	53714801	-	BF3516	-	hypothetical protein
3511	 43.20	0	4019917..4021659	-	580	53714802	-	BF3517	-	hypothetical protein
3512	 46.12	0	4021638..4023404	-	588	53714803	-	BF3518	-	hypothetical protein
3513	 46.18	0	4023450..4024352	-	300	53714804	-	BF3519	-	putative lipoprotein
3514	 42.32	0	4024479..4025747	-	422	53714805	-	BF3520	-	hypothetical protein
3515	 36.29	-1	4026045..4026923	+	292	53714806	-	BF3521	-	AraC family transcription regulator
3516	 39.52	0	4027086..4028297	-	403	53714807	-	BF3522	-	tyrosine type site-specific recombinase
3517	 35.18	-1	4028730..4029596	-	288	53714808	-	BF3523	-	AraC family transcription regulator
3518	 46.62	0	4029826..4030992	+	388	53714809	-	BF3524	-	nicotinate phosphoribosyltransferase
3519	 42.74	0	4031016..4032227	-	403	53714810	-	BF3525	-	thiol:disulfide interchange protein
3520	 29.63	-2	4032358..4032519	+	53	53714811	-	BF3526	-	hypothetical protein
3521	 46.71	0	4032976..4035240	-	754	53714812	-	BF3527	-	putative Na+/H+ antiporter
3522	 40.90	0	4035249..4035605	+	118	53714813	-	BF3528	-	hypothetical protein
3523	 51.16	+1	4035781..4037295	+	504	53714814	-	BF3529	-	pyruvate carboxylase subunit A
3524	 49.70	+1	4037300..4037800	+	166	53714815	-	BF3530	-	putative methylmalonyl-CoA decarboxylase biotin carboxyl carrier subunit
3525	 52.80	+1	4037820..4039355	+	511	53714816	-	BF3531	-	propionyl-CoA carboxylase beta chain
3526	 49.40	+1	4039460..4040131	-	223	53714817	-	BF3532	-	putative isochorismatase
3527	 41.67	0	4040147..4040386	-	79	53714818	-	BF3533	-	hypothetical protein
3528	 51.30	+1	4040529..4042142	+	537	53714819	-	BF3534	-	putative peptidase
3529	 37.65	0	4042219..4042380	-	53	53714820	-	BF3535	-	hypothetical protein
3530	 49.40	+1	4042538..4044031	-	497	53714821	-	BF3536	-	inositol-5-monophosphate dehydrogenase
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.