IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3305	 50.39	+1	3768099..3770414	+	771	53714596	-	BF3310	-	trehalose/maltose hydrolase
3306	 50.71	+1	3770766..3771818	+	350	53714597	-	BF3311	-	putative multidrug resistance protein
3307	 51.38	+1	3771961..3774996	+	1011	53714598	-	BF3312	-	AcrB/AcrD/AcrF family transporter
3308	 50.43	+1	3775024..3776298	+	424	53714599	-	BF3313	-	outer membrane efflux protein
3309	 45.94	0	3776541..3777833	+	430	53714600	-	BF3314	-	hypothetical protein
3310	 48.07	0	3778014..3781718	+	1234	53714601	-	BF3315	-	phosphoribosylformylglycinamidine synthase
3311	 42.85	0	3781890..3785882	+	1330	53714602	-	BF3316	-	two-component system sensor histidine kinase/response regulator hybrid
3312	 47.15	0	3785910..3786452	+	180	53714603	-	BF3317	-	chromate transport protein
3313	 45.72	0	3786478..3787026	+	182	53714604	-	BF3318	-	chromate transport protein
3314	 46.59	0	3787198..3788706	-	502	53714605	-	BF3319	-	putative secreted protein
3315	 51.90	+1	3788870..3791653	+	927	53714606	-	BF3320	-	excinuclease ABC subunit A
3316	 48.45	0	3791822..3792304	-	160	53714607	-	BF3321	-	hypothetical protein
3317	 47.19	0	3792312..3792542	-	76	53714608	-	BF3322	-	hypothetical protein
3318	 49.58	+1	3792562..3793989	-	475	53714609	-	BF3323	-	carbon starvation protein A
3319	 39.87	0	3794004..3794156	-	50	53714610	-	BF3324	-	hypothetical protein
3320	 53.19	+1	3794257..3795777	+	506	53714611	-	BF3325	-	hypothetical protein
3321	 45.88	0	3795861..3798131	+	756	53714612	-	BF3326	-	two-component system sensor histidine kinase
3322	 53.18	+1	3798136..3799329	-	397	53714613	-	BF3327	-	hypothetical protein
3323	 45.45	0	3799605..3799868	+	87	53714614	-	BF3328	-	hypothetical protein
3324	 40.86	0	3799917..3800102	-	61	53714615	-	BF3329	-	hypothetical protein
3325	 46.73	0	3800093..3801271	+	392	53714616	-	BF3330	-	hypothetical protein
3326	 44.03	0	3801290..3801850	+	186	53714617	-	BF3331	-	hypothetical protein
3327	 48.38	0	3801887..3805441	+	1184	53714618	-	BF3332	-	pyruvate-flavodoxin oxidoreductase
3328	 50.40	+1	3805648..3806151	+	167	53714619	-	BF3333	-	putative acetyltransferase
3329	 46.08	0	3806193..3807047	-	284	53714620	-	BF3334	-	glycine betaine-binding protein precursor
3330	 48.73	0	3807067..3807891	-	274	53714621	-	BF3335	-	glycine betaine/L-proline transport system permease
3331	 46.29	0	3807888..3809114	-	408	53714622	-	BF3336	-	glycine betaine transport ATP-binding protein
3332	 44.44	0	3809200..3809361	+	53	53714623	-	BF3337	-	hypothetical protein
3333	 49.86	+1	3809449..3809793	-	114	53714624	-	BF3338	-	putative methylated-DNA methyltransferase
3334	 50.99	+1	3809824..3812547	-	907	53714625	-	BF3339	-	two-component system sensor histidine kinase/response regulator hybrid
3335	 49.83	+1	3812734..3813624	-	296	53714626	-	BF3340	-	fructokinase
3336	 50.13	+1	3813656..3814822	-	388	53714627	-	BF3341	-	glucose/galactose transporter
3337	 48.74	0	3814868..3816736	-	622	53714628	-	BF3342	-	2,6-beta-D-fructofuranosidase
3338	 47.92	0	3816861..3819212	-	783	53714629	-	BF3343	-	2,6-beta-D-fructofuranosidase
3339	 43.14	0	3819399..3819755	-	118	53714630	-	BF3344	-	hypothetical protein
3340	 45.99	0	3819910..3820683	-	257	53714631	-	BF3345	-	hypothetical protein
3341	 37.45	-1	3820730..3822307	-	525	53714632	-	BF3346	-	M-like protein
3342	 38.62	0	3822573..3822761	-	62	53714633	-	BF3347	-	hypothetical protein
3343	 41.95	0	3823667..3824722	-	351	53714634	-	BF3348	-	hypothetical protein
3344	 41.50	0	3824719..3825318	-	199	53714635	-	BF3349	-	hypothetical protein
3345	 44.63	0	3825614..3826879	+	421	53714636	-	BF3350	-	putative glucose/galactose transporter
3346	 44.86	0	3826876..3827604	-	242	53714637	-	BF3351	-	putative nitroreductase
3347	 44.21	0	3827623..3828321	-	232	53714638	-	BF3352	-	ThiJ/PfpI family protein
3348	 47.50	0	3828450..3829289	-	279	53714639	-	BF3353	-	putative phosphoesterase
3349	 48.77	0	3829357..3831546	-	729	53714640	-	BF3354	-	cation/H+ antiporter
3350	 47.29	0	3831919..3832269	-	116	53714641	-	BF3355	-	hypothetical protein
3351	 48.62	0	3832250..3833302	-	350	53714642	-	BF3356	-	hypothetical protein
3352	 48.51	0	3833488..3834825	+	445	53714643	-	BF3357	-	hypothetical protein
3353	 49.67	+1	3834822..3836027	+	401	53714644	-	BF3358	-	putative outer membrane protein
3354	 46.84	0	3836029..3836487	-	152	53714645	-	BF3359	-	putative lipoprotein
3355	 45.58	0	3836500..3837969	-	489	53714646	-	BF3360	-	putative outer membrane protein
3356	 47.50	0	3837897..3841022	-	1041	53714647	-	BF3361	-	AcrB/AcrD/AcrF family transporter
3357	 44.94	0	3841022..3842089	-	355	53714648	-	BF3362	-	hypothetical protein
3358	 40.16	0	3842260..3843138	+	292	53714649	-	BF3363	-	transcriptional regulator
3359	 45.49	0	3843228..3844412	+	394	53714650	-	BF3364	-	aminopeptidase C
3360	 44.99	0	3844594..3845331	-	245	53714651	-	BF3365	-	two-component system response regulator
3361	 44.62	0	3845328..3846497	-	389	53714652	-	BF3366	-	putative two-component system sensor protein
3362	 44.20	0	3846687..3847367	+	226	53714653	-	BF3367	-	hypothetical protein
3363	 25.99	-2	3847533..3847709	-	58	53714654	-	BF3368	-	hypothetical protein
3364	 46.26	0	3848262..3851417	+	1051	53714655	-	BF3369	-	hypothetical protein
3365	 47.04	0	3851432..3853123	+	563	53714656	-	BF3370	-	hypothetical protein
3366	 48.59	0	3853200..3855080	+	626	53714657	-	BF3371	-	hypothetical protein
3367	 50.86	+1	3855480..3856352	+	290	53714658	-	BF3372	-	electron transfer flavoprotein beta-subunit
3368	 46.67	0	3856368..3857387	+	339	53714659	-	BF3373	-	electron transfer flavoprotein alpha-subunit
3369	 49.59	+1	3857391..3859094	+	567	53714660	-	BF3374	-	acyl-CoA dehydrogenase
3370	 48.76	0	3859327..3863352	+	1341	53714661	-	BF3375	-	beta-galactosidase
3371	 45.19	0	3863498..3863809	-	103	53714662	-	BF3376	-	hypothetical protein
3372	 47.56	0	3863825..3864766	-	313	53714663	-	BF3377	-	putative chaperone DnaJ
3373	 46.36	0	3865068..3866948	-	626	53714664	-	BF3378	-	hypothetical protein
3374	 47.97	0	3866890..3868590	-	566	53714665	-	BF3379	-	putative integral membrane protein
3375	 48.32	0	3868577..3869797	-	406	53714666	-	BF3380	-	hypothetical protein
3376	 35.09	-1	3869883..3870167	-	94	53714667	-	BF3381	-	hypothetical protein
3377	 49.06	+1	3870212..3870529	+	105	53714668	-	BF3382	-	hypothetical protein
3378	 46.93	0	3870540..3872753	+	737	53714669	-	BF3383	-	putative thiol:disulfide interchange protein
3379	 48.92	+1	3872873..3873886	-	337	53714670	-	BF3384	-	low-specificity L-threonine aldolase
3380	 44.44	0	3873976..3874344	-	122	53714671	-	BF3385	-	hypothetical protein
3381	 43.30	0	3874347..3874898	-	183	53714672	-	BF3386	-	RNA polymerase ECF-type sigma factor
3382	 44.29	0	3875029..3875457	+	142	53714673	-	BF3387	-	hypothetical protein
3383	 40.18	0	3875580..3875798	-	72	53714674	-	BF3388	-	hypothetical protein
3384	 48.56	0	3876039..3877778	+	579	53714675	-	BF3389	-	pyruvate dehydrogenase
3385	 46.70	0	3877999..3878574	-	191	53714676	-	BF3390	-	iron-sulfur flavoprotein
3386	 42.22	0	3878772..3879041	-	89	53714677	-	BF3391	-	hypothetical protein
3387	 48.20	0	3879042..3879263	-	73	53714678	-	BF3392	-	hypothetical protein
3388	 43.95	0	3879359..3879763	-	134	53714679	-	BF3393	-	hypothetical protein
3389	 38.60	0	3879827..3880984	-	385	53714680	-	BF3394	-	hypothetical protein
3390	 43.83	0	3881130..3882767	-	545	53714681	groEL	BF3395	-	chaperonin GroEL
3391	 41.03	0	3882810..3883082	-	90	53714682	groES	BF3396	-	co-chaperonin GroES
3392	 39.08	0	3883764..3884963	+	399	53714683	-	BF3397	-	hypothetical protein
3393	 39.67	0	3884994..3886130	+	378	53714684	-	BF3398	-	hypothetical protein
3394	 43.21	0	3886144..3887277	+	377	53714685	-	BF3399	-	hypothetical protein
3395	 38.92	0	3887268..3888377	+	369	53714686	-	BF3400	-	hypothetical protein
3396	 41.26	0	3888347..3889279	+	310	53714687	-	BF3401	-	hypothetical protein
3397	 42.42	0	3889251..3891341	+	696	53714688	-	BF3402	-	hypothetical protein
3398	 41.07	0	3891345..3891887	+	180	53714689	-	BF3403	-	hypothetical protein
3399	 43.99	0	3892075..3892956	-	293	53714690	-	BF3404	-	hypothetical protein
3400	 36.42	-1	3892994..3893155	-	53	53714691	-	BF3405	-	hypothetical protein
3401	 37.48	-1	3893285..3893863	-	192	53714692	-	BF3406	-	hypothetical protein
3402	 36.08	-1	3893875..3894348	-	157	53714693	-	BF3407	-	RNA polymerase ECF-type sigma factor
3403	 33.33	-1	3894573..3894725	-	50	53714694	-	BF3408	-	hypothetical protein
3404	 36.61	-1	3894923..3895105	+	60	53714695	-	BF3409	-	hypothetical protein
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.