IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3278	 49.75	+1	3734061..3734852	-	263	53714569	-	BF3283	-	hypothetical protein
3279	 43.24	0	3734849..3735181	-	110	53714570	-	BF3284	-	hypothetical protein
3280	 47.11	0	3735184..3735720	-	178	53714571	-	BF3285	-	putative NAD(P)H nitroreductase
3281	 47.51	0	3735887..3736429	-	180	53714572	-	BF3286	-	putative carbonic anhydrase
3282	 50.00	+1	3736547..3737530	+	327	53714573	-	BF3287	-	hypothetical protein
3283	 44.94	0	3737763..3738167	+	134	53714574	-	BF3288	-	lactoylglutathione lyase and related protein
3284	 49.42	+1	3738293..3739846	+	517	53714575	-	BF3289	-	propionyl-CoA carboxylase beta chain
3285	 47.43	0	3739867..3740781	+	304	53714576	-	BF3290	-	hypothetical protein
3286	 43.52	0	3740807..3741238	+	143	53714577	-	BF3291	-	biotin carboxyl carrier protein
3287	 49.70	+1	3741241..3742401	+	386	53714578	-	BF3292	-	oxaloacetate decarboxylase beta chain
3288	 46.25	0	3742549..3743880	+	443	53714579	-	BF3293	-	hypothetical protein
3289	 46.14	0	3743811..3745184	+	457	53714580	-	BF3294	-	hypothetical protein
3290	 48.46	0	3745754..3747604	+	616	53714581	-	BF3295	-	alpha-amylase
3291	 51.02	+1	3747762..3748202	+	146	53714582	-	BF3296	-	MarR family transcriptional regulator
3292	 51.40	+1	3748215..3749282	+	355	53714583	-	BF3297	-	putative multidrug resistance protein
3293	 49.19	+1	3749287..3750882	+	531	53714584	-	BF3298	-	putative transport protein
3294	 44.88	0	3750977..3751981	-	334	53714585	-	BF3299	-	fructose-bisphosphate aldolase
3295	 48.37	0	3752162..3753298	-	378	53714586	-	BF3300	-	hypothetical protein
3296	 38.89	0	3753562..3753813	+	83	53714587	rpmE2	BF3301	-	50S ribosomal protein L31 type B
3297	 42.63	0	3753782..3754093	-	103	53714588	-	BF3302	-	hypothetical protein
3298	 49.44	+1	3754210..3755736	+	508	53714589	-	BF3303	-	hypothetical protein
3299	 48.15	0	3755847..3758708	-	953	53714590	-	BF3304	-	putative alpha-amylase
3300	 47.22	0	3758813..3760411	-	532	53714591	-	BF3305	-	hypothetical protein
3301	 49.01	+1	3760447..3762066	-	539	53714592	-	BF3306	-	hypothetical protein
3302	 46.06	0	3762077..3765085	-	1002	53714593	-	BF3307	-	hypothetical protein
3303	 53.02	+1	3765401..3766411	+	336	53714594	-	BF3308	-	LacI family transcriptional regulator
3304	 53.68	+1	3766432..3767748	+	438	53714595	-	BF3309	-	sugar transporter
3305	 50.39	+1	3768099..3770414	+	771	53714596	-	BF3310	-	trehalose/maltose hydrolase
3306	 50.71	+1	3770766..3771818	+	350	53714597	-	BF3311	-	putative multidrug resistance protein
3307	 51.38	+1	3771961..3774996	+	1011	53714598	-	BF3312	-	AcrB/AcrD/AcrF family transporter
3308	 50.43	+1	3775024..3776298	+	424	53714599	-	BF3313	-	outer membrane efflux protein
3309	 45.94	0	3776541..3777833	+	430	53714600	-	BF3314	-	hypothetical protein
3310	 48.07	0	3778014..3781718	+	1234	53714601	-	BF3315	-	phosphoribosylformylglycinamidine synthase
3311	 42.85	0	3781890..3785882	+	1330	53714602	-	BF3316	-	two-component system sensor histidine kinase/response regulator hybrid
3312	 47.15	0	3785910..3786452	+	180	53714603	-	BF3317	-	chromate transport protein
3313	 45.72	0	3786478..3787026	+	182	53714604	-	BF3318	-	chromate transport protein
3314	 46.59	0	3787198..3788706	-	502	53714605	-	BF3319	-	putative secreted protein
3315	 51.90	+1	3788870..3791653	+	927	53714606	-	BF3320	-	excinuclease ABC subunit A
3316	 48.45	0	3791822..3792304	-	160	53714607	-	BF3321	-	hypothetical protein
3317	 47.19	0	3792312..3792542	-	76	53714608	-	BF3322	-	hypothetical protein
3318	 49.58	+1	3792562..3793989	-	475	53714609	-	BF3323	-	carbon starvation protein A
3319	 39.87	0	3794004..3794156	-	50	53714610	-	BF3324	-	hypothetical protein
3320	 53.19	+1	3794257..3795777	+	506	53714611	-	BF3325	-	hypothetical protein
3321	 45.88	0	3795861..3798131	+	756	53714612	-	BF3326	-	two-component system sensor histidine kinase
3322	 53.18	+1	3798136..3799329	-	397	53714613	-	BF3327	-	hypothetical protein
3323	 45.45	0	3799605..3799868	+	87	53714614	-	BF3328	-	hypothetical protein
3324	 40.86	0	3799917..3800102	-	61	53714615	-	BF3329	-	hypothetical protein
3325	 46.73	0	3800093..3801271	+	392	53714616	-	BF3330	-	hypothetical protein
3326	 44.03	0	3801290..3801850	+	186	53714617	-	BF3331	-	hypothetical protein
3327	 48.38	0	3801887..3805441	+	1184	53714618	-	BF3332	-	pyruvate-flavodoxin oxidoreductase
3328	 50.40	+1	3805648..3806151	+	167	53714619	-	BF3333	-	putative acetyltransferase
3329	 46.08	0	3806193..3807047	-	284	53714620	-	BF3334	-	glycine betaine-binding protein precursor
3330	 48.73	0	3807067..3807891	-	274	53714621	-	BF3335	-	glycine betaine/L-proline transport system permease
3331	 46.29	0	3807888..3809114	-	408	53714622	-	BF3336	-	glycine betaine transport ATP-binding protein
3332	 44.44	0	3809200..3809361	+	53	53714623	-	BF3337	-	hypothetical protein
3333	 49.86	+1	3809449..3809793	-	114	53714624	-	BF3338	-	putative methylated-DNA methyltransferase
3334	 50.99	+1	3809824..3812547	-	907	53714625	-	BF3339	-	two-component system sensor histidine kinase/response regulator hybrid
3335	 49.83	+1	3812734..3813624	-	296	53714626	-	BF3340	-	fructokinase
3336	 50.13	+1	3813656..3814822	-	388	53714627	-	BF3341	-	glucose/galactose transporter
3337	 48.74	0	3814868..3816736	-	622	53714628	-	BF3342	-	2,6-beta-D-fructofuranosidase
3338	 47.92	0	3816861..3819212	-	783	53714629	-	BF3343	-	2,6-beta-D-fructofuranosidase
3339	 43.14	0	3819399..3819755	-	118	53714630	-	BF3344	-	hypothetical protein
3340	 45.99	0	3819910..3820683	-	257	53714631	-	BF3345	-	hypothetical protein
3341	 37.45	-1	3820730..3822307	-	525	53714632	-	BF3346	-	M-like protein
3342	 38.62	0	3822573..3822761	-	62	53714633	-	BF3347	-	hypothetical protein
3343	 41.95	0	3823667..3824722	-	351	53714634	-	BF3348	-	hypothetical protein
3344	 41.50	0	3824719..3825318	-	199	53714635	-	BF3349	-	hypothetical protein
3345	 44.63	0	3825614..3826879	+	421	53714636	-	BF3350	-	putative glucose/galactose transporter
3346	 44.86	0	3826876..3827604	-	242	53714637	-	BF3351	-	putative nitroreductase
3347	 44.21	0	3827623..3828321	-	232	53714638	-	BF3352	-	ThiJ/PfpI family protein
3348	 47.50	0	3828450..3829289	-	279	53714639	-	BF3353	-	putative phosphoesterase
3349	 48.77	0	3829357..3831546	-	729	53714640	-	BF3354	-	cation/H+ antiporter
3350	 47.29	0	3831919..3832269	-	116	53714641	-	BF3355	-	hypothetical protein
3351	 48.62	0	3832250..3833302	-	350	53714642	-	BF3356	-	hypothetical protein
3352	 48.51	0	3833488..3834825	+	445	53714643	-	BF3357	-	hypothetical protein
3353	 49.67	+1	3834822..3836027	+	401	53714644	-	BF3358	-	putative outer membrane protein
3354	 46.84	0	3836029..3836487	-	152	53714645	-	BF3359	-	putative lipoprotein
3355	 45.58	0	3836500..3837969	-	489	53714646	-	BF3360	-	putative outer membrane protein
3356	 47.50	0	3837897..3841022	-	1041	53714647	-	BF3361	-	AcrB/AcrD/AcrF family transporter
3357	 44.94	0	3841022..3842089	-	355	53714648	-	BF3362	-	hypothetical protein
3358	 40.16	0	3842260..3843138	+	292	53714649	-	BF3363	-	transcriptional regulator
3359	 45.49	0	3843228..3844412	+	394	53714650	-	BF3364	-	aminopeptidase C
3360	 44.99	0	3844594..3845331	-	245	53714651	-	BF3365	-	two-component system response regulator
3361	 44.62	0	3845328..3846497	-	389	53714652	-	BF3366	-	putative two-component system sensor protein
3362	 44.20	0	3846687..3847367	+	226	53714653	-	BF3367	-	hypothetical protein
3363	 25.99	-2	3847533..3847709	-	58	53714654	-	BF3368	-	hypothetical protein
3364	 46.26	0	3848262..3851417	+	1051	53714655	-	BF3369	-	hypothetical protein
3365	 47.04	0	3851432..3853123	+	563	53714656	-	BF3370	-	hypothetical protein
3366	 48.59	0	3853200..3855080	+	626	53714657	-	BF3371	-	hypothetical protein
3367	 50.86	+1	3855480..3856352	+	290	53714658	-	BF3372	-	electron transfer flavoprotein beta-subunit
3368	 46.67	0	3856368..3857387	+	339	53714659	-	BF3373	-	electron transfer flavoprotein alpha-subunit
3369	 49.59	+1	3857391..3859094	+	567	53714660	-	BF3374	-	acyl-CoA dehydrogenase
3370	 48.76	0	3859327..3863352	+	1341	53714661	-	BF3375	-	beta-galactosidase
3371	 45.19	0	3863498..3863809	-	103	53714662	-	BF3376	-	hypothetical protein
3372	 47.56	0	3863825..3864766	-	313	53714663	-	BF3377	-	putative chaperone DnaJ
3373	 46.36	0	3865068..3866948	-	626	53714664	-	BF3378	-	hypothetical protein
3374	 47.97	0	3866890..3868590	-	566	53714665	-	BF3379	-	putative integral membrane protein
3375	 48.32	0	3868577..3869797	-	406	53714666	-	BF3380	-	hypothetical protein
3376	 35.09	-1	3869883..3870167	-	94	53714667	-	BF3381	-	hypothetical protein
3377	 49.06	+1	3870212..3870529	+	105	53714668	-	BF3382	-	hypothetical protein
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.