IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3233	 39.06	0	3672418..3673011	-	197	53714524	-	BF3237	-	hypothetical protein
3234	 38.89	0	3673048..3673281	-	77	53714525	-	BF3238	-	hypothetical protein
3235	 48.06	0	3673443..3674909	+	488	53714526	-	BF3239	-	aminoacyl-histidine dipeptidase
3236	 47.25	0	3675050..3676084	+	344	53714527	-	BF3240	-	hypothetical protein
3237	 42.65	0	3676069..3677238	-	389	53714528	-	BF3241	-	hypothetical protein
3238	 47.34	0	3677377..3678033	-	218	53714529	-	BF3242	-	putative translaldolase
3239	 50.77	+1	3678099..3679916	-	605	53714530	-	BF3243	-	hypothetical protein
3240	 49.56	+1	3679966..3683028	-	1020	53714531	-	BF3244	-	beta-galactosidase
3241	 50.60	+1	3683106..3685421	-	771	53714532	-	BF3246	-	beta-hexosaminidase precursor
3242	 48.27	0	3685466..3687052	-	528	53714533	-	BF3247	-	putative sulfatase
3243	 47.85	0	3687464..3688930	+	488	53714534	-	BF3248	-	arylsulfatase precursor
3244	 46.91	0	3689067..3690716	-	549	53714535	-	BF3249	-	beta-hexosaminidase precursor
3245	 49.57	+1	3690893..3693817	+	974	53714536	-	BF3250	-	two-component system sensor histidine kinase/response regulator hybrid
3246	 47.58	0	3693893..3694945	-	350	53714537	-	BF3251	-	fructose-bisphosphate aldolase
3247	 45.52	0	3695104..3695850	-	248	53714538	-	BF3252	-	phosphoglyceromutase
3248	 50.66	+1	3696007..3698349	+	780	53714539	-	BF3253	-	hypothetical protein
3249	 49.28	+1	3698490..3699944	-	484	53714540	-	BF3254	-	putative molybdenum transport ATP-binding protein
3250	 48.32	0	3700086..3701600	-	504	53714541	-	BF3255	-	N-acetylgalactosamine-6-sulfatase precursor
3251	 48.17	0	3701616..3703172	-	518	53714542	-	BF3256	-	beta-hexosaminidase precursor
3252	 45.39	0	3703273..3705138	-	621	53714543	-	BF3257	-	hypothetical protein
3253	 43.37	0	3705153..3708590	-	1145	53714544	-	BF3258	-	hypothetical protein
3254	 41.94	0	3708728..3709726	-	332	53714545	-	BF3259	-	putative anti-sigma factor
3255	 41.71	0	3709817..3710377	-	186	53714546	-	BF3260	-	RNA polymerase ECF-type sigma factor
3256	 48.08	0	3710618..3712618	-	666	53714547	-	BF3261	-	pullulanase precursor
3257	 48.15	0	3712677..3713243	-	188	161936263	ruvC	BF3262	-	Holliday junction resolvase
3258	 47.19	0	3713240..3713542	-	100	53714549	-	BF3263	-	hypothetical protein
3259	 51.01	+1	3713895..3715235	-	446	53714550	-	BF3264	-	hypothetical protein
3260	 39.52	0	3715560..3715769	-	69	53714551	-	BF3265	-	hypothetical protein
3261	 50.29	+1	3715858..3716877	+	339	53714552	pheS	BF3266	-	phenylalanyl-tRNA synthetase subunit alpha
3262	 51.29	+1	3716944..3718185	+	413	53714553	-	BF3267	-	putative transmembrane transport protein
3263	 49.12	+1	3718182..3718859	+	225	53714554	-	BF3268	-	endonuclease III
3264	 46.59	0	3718949..3720208	+	419	53714555	pgk	BF3269	-	phosphoglycerate kinase
3265	 47.64	0	3720393..3721238	+	281	53714556	-	BF3270	-	putative thiamine biosynthesis protein
3266	 48.17	0	3721255..3722292	+	345	53714557	-	BF3271	-	hypothetical protein
3267	 47.27	0	3722316..3723506	+	396	53714558	-	BF3272	-	putative membrane-associated protein
3268	 46.84	0	3723510..3725708	+	732	53714559	-	BF3273	-	hypothetical protein
3269	 38.24	0	3725954..3726463	+	169	53714560	-	BF3274	-	hypothetical protein
3270	 42.74	0	3726788..3727627	-	279	53714561	-	BF3275	-	beta-glucanase precursor
3271	 46.29	0	3727995..3729515	+	506	53714562	-	BF3276	-	putative peptide synthetase
3272	 37.45	-1	3729530..3729772	+	80	53714563	-	BF3277	-	acyl carrier protein
3273	 46.85	0	3729776..3731158	+	460	53714564	-	BF3278	-	membrane-bound O-acyltransferase
3274	 45.59	0	3731177..3732277	+	366	53714565	-	BF3279	-	hypothetical protein
3275	 35.62	-1	3732321..3732713	+	130	53714566	-	BF3280	-	hypothetical protein
3276	 47.42	0	3732906..3733487	-	193	53714567	maf	BF3281	-	Maf-like protein
3277	 51.15	+1	3733519..3734040	-	173	53714568	-	BF3282	-	putative hydrolase
3278	 49.75	+1	3734061..3734852	-	263	53714569	-	BF3283	-	hypothetical protein
3279	 43.24	0	3734849..3735181	-	110	53714570	-	BF3284	-	hypothetical protein
3280	 47.11	0	3735184..3735720	-	178	53714571	-	BF3285	-	putative NAD(P)H nitroreductase
3281	 47.51	0	3735887..3736429	-	180	53714572	-	BF3286	-	putative carbonic anhydrase
3282	 50.00	+1	3736547..3737530	+	327	53714573	-	BF3287	-	hypothetical protein
3283	 44.94	0	3737763..3738167	+	134	53714574	-	BF3288	-	lactoylglutathione lyase and related protein
3284	 49.42	+1	3738293..3739846	+	517	53714575	-	BF3289	-	propionyl-CoA carboxylase beta chain
3285	 47.43	0	3739867..3740781	+	304	53714576	-	BF3290	-	hypothetical protein
3286	 43.52	0	3740807..3741238	+	143	53714577	-	BF3291	-	biotin carboxyl carrier protein
3287	 49.70	+1	3741241..3742401	+	386	53714578	-	BF3292	-	oxaloacetate decarboxylase beta chain
3288	 46.25	0	3742549..3743880	+	443	53714579	-	BF3293	-	hypothetical protein
3289	 46.14	0	3743811..3745184	+	457	53714580	-	BF3294	-	hypothetical protein
3290	 48.46	0	3745754..3747604	+	616	53714581	-	BF3295	-	alpha-amylase
3291	 51.02	+1	3747762..3748202	+	146	53714582	-	BF3296	-	MarR family transcriptional regulator
3292	 51.40	+1	3748215..3749282	+	355	53714583	-	BF3297	-	putative multidrug resistance protein
3293	 49.19	+1	3749287..3750882	+	531	53714584	-	BF3298	-	putative transport protein
3294	 44.88	0	3750977..3751981	-	334	53714585	-	BF3299	-	fructose-bisphosphate aldolase
3295	 48.37	0	3752162..3753298	-	378	53714586	-	BF3300	-	hypothetical protein
3296	 38.89	0	3753562..3753813	+	83	53714587	rpmE2	BF3301	-	50S ribosomal protein L31 type B
3297	 42.63	0	3753782..3754093	-	103	53714588	-	BF3302	-	hypothetical protein
3298	 49.44	+1	3754210..3755736	+	508	53714589	-	BF3303	-	hypothetical protein
3299	 48.15	0	3755847..3758708	-	953	53714590	-	BF3304	-	putative alpha-amylase
3300	 47.22	0	3758813..3760411	-	532	53714591	-	BF3305	-	hypothetical protein
3301	 49.01	+1	3760447..3762066	-	539	53714592	-	BF3306	-	hypothetical protein
3302	 46.06	0	3762077..3765085	-	1002	53714593	-	BF3307	-	hypothetical protein
3303	 53.02	+1	3765401..3766411	+	336	53714594	-	BF3308	-	LacI family transcriptional regulator
3304	 53.68	+1	3766432..3767748	+	438	53714595	-	BF3309	-	sugar transporter
3305	 50.39	+1	3768099..3770414	+	771	53714596	-	BF3310	-	trehalose/maltose hydrolase
3306	 50.71	+1	3770766..3771818	+	350	53714597	-	BF3311	-	putative multidrug resistance protein
3307	 51.38	+1	3771961..3774996	+	1011	53714598	-	BF3312	-	AcrB/AcrD/AcrF family transporter
3308	 50.43	+1	3775024..3776298	+	424	53714599	-	BF3313	-	outer membrane efflux protein
3309	 45.94	0	3776541..3777833	+	430	53714600	-	BF3314	-	hypothetical protein
3310	 48.07	0	3778014..3781718	+	1234	53714601	-	BF3315	-	phosphoribosylformylglycinamidine synthase
3311	 42.85	0	3781890..3785882	+	1330	53714602	-	BF3316	-	two-component system sensor histidine kinase/response regulator hybrid
3312	 47.15	0	3785910..3786452	+	180	53714603	-	BF3317	-	chromate transport protein
3313	 45.72	0	3786478..3787026	+	182	53714604	-	BF3318	-	chromate transport protein
3314	 46.59	0	3787198..3788706	-	502	53714605	-	BF3319	-	putative secreted protein
3315	 51.90	+1	3788870..3791653	+	927	53714606	-	BF3320	-	excinuclease ABC subunit A
3316	 48.45	0	3791822..3792304	-	160	53714607	-	BF3321	-	hypothetical protein
3317	 47.19	0	3792312..3792542	-	76	53714608	-	BF3322	-	hypothetical protein
3318	 49.58	+1	3792562..3793989	-	475	53714609	-	BF3323	-	carbon starvation protein A
3319	 39.87	0	3794004..3794156	-	50	53714610	-	BF3324	-	hypothetical protein
3320	 53.19	+1	3794257..3795777	+	506	53714611	-	BF3325	-	hypothetical protein
3321	 45.88	0	3795861..3798131	+	756	53714612	-	BF3326	-	two-component system sensor histidine kinase
3322	 53.18	+1	3798136..3799329	-	397	53714613	-	BF3327	-	hypothetical protein
3323	 45.45	0	3799605..3799868	+	87	53714614	-	BF3328	-	hypothetical protein
3324	 40.86	0	3799917..3800102	-	61	53714615	-	BF3329	-	hypothetical protein
3325	 46.73	0	3800093..3801271	+	392	53714616	-	BF3330	-	hypothetical protein
3326	 44.03	0	3801290..3801850	+	186	53714617	-	BF3331	-	hypothetical protein
3327	 48.38	0	3801887..3805441	+	1184	53714618	-	BF3332	-	pyruvate-flavodoxin oxidoreductase
3328	 50.40	+1	3805648..3806151	+	167	53714619	-	BF3333	-	putative acetyltransferase
3329	 46.08	0	3806193..3807047	-	284	53714620	-	BF3334	-	glycine betaine-binding protein precursor
3330	 48.73	0	3807067..3807891	-	274	53714621	-	BF3335	-	glycine betaine/L-proline transport system permease
3331	 46.29	0	3807888..3809114	-	408	53714622	-	BF3336	-	glycine betaine transport ATP-binding protein
3332	 44.44	0	3809200..3809361	+	53	53714623	-	BF3337	-	hypothetical protein
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.