IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3184	 43.26	0	3615110..3616147	-	345	53714475	-	BF3188	-	histidinol-phosphate aminotransferase
3185	 47.24	0	3616144..3617430	-	428	53714476	-	BF3189	-	histidinol dehydrogenase
3186	 43.66	0	3617466..3618317	-	283	53714477	hisG	BF3190	-	ATP phosphoribosyltransferase
3187	 41.26	0	3618565..3619056	-	163	53714478	-	BF3191	-	hypothetical protein
3188	 41.67	0	3619178..3619885	+	235	53714479	-	BF3192	-	hypothetical protein
3189	 42.14	0	3619970..3621979	-	669	53714480	-	BF3193	-	thiol:disulfide interchange protein DsbD precursor
3190	 38.67	0	3622080..3622379	-	99	53714481	-	BF3194	-	hypothetical protein
3191	 44.72	0	3622481..3623095	+	204	53714482	-	BF3195	-	uridine kinase
3192	 41.52	0	3623092..3624483	+	463	53714483	-	BF3196	-	transglycosylase
3193	 42.28	0	3624543..3626096	-	517	53714484	-	BF3197	-	osmo-regulated proline transporter
3194	 44.22	0	3626372..3626977	-	201	53714485	-	BF3198	-	putative NAD(P)H nitroreductase
3195	 43.80	0	3626992..3629742	-	916	53714486	-	BF3199	-	5-methyltetrahydrofolate-homocysteine methyltransferase
3196	 41.50	0	3629762..3630214	-	150	53714487	smpB	BF3200	-	SsrA-binding protein
3197	 42.17	0	3630224..3630766	-	180	53714488	-	BF3201	-	hypothetical protein
3198	 35.75	-1	3630798..3631253	-	151	53714489	-	BF3202	-	hypothetical protein
3199	 42.11	0	3631371..3631598	-	75	53714490	-	BF3203	-	hypothetical protein
3200	 42.71	0	3631681..3632181	-	166	53714491	-	BF3204	-	hypothetical protein
3201	 41.48	0	3632720..3633124	-	134	53714492	-	BF3205	-	hypothetical protein
3202	 45.44	0	3633364..3634065	+	233	53714493	-	BF3206	-	hypothetical protein
3203	 45.90	0	3634086..3635096	+	336	53714494	-	BF3207	-	hypothetical protein
3204	 42.41	0	3635598..3636611	+	337	53714495	-	BF3208	-	3-oxoacyl-(acyl carrier protein) synthase III
3205	 39.70	0	3636718..3638163	+	481	53714496	-	BF3209	-	cytoplasmic alpha-amylase
3206	 39.10	0	3638165..3639100	+	311	53714497	-	BF3210	-	putative serum resistance protein BrkB
3207	 37.06	-1	3639114..3639515	-	133	53714498	-	BF3211	-	hypothetical protein
3208	 46.24	0	3639803..3640639	-	278	53714499	-	BF3212	-	putative ferredoxin
3209	 48.11	0	3640914..3642977	+	687	53714500	rho	BF3213	-	transcription termination factor Rho
3210	 46.62	0	3643109..3644959	+	616	53714501	-	BF3214	-	putative two-component system sensor histidine kinase
3211	 46.93	0	3644956..3646911	+	651	53714502	-	BF3215	-	putative two-component system sensor histidine kinase
3212	 49.58	+1	3646986..3648308	+	440	53714503	-	BF3216	-	multidrug efflux pump BexA
3213	 51.06	+1	3648460..3649779	+	439	53714504	-	BF3217	-	putative signal recognition protein
3214	 47.61	0	3650184..3651269	+	361	53714505	-	BF3218	-	thiol:disulfide interchange protein
3215	 50.57	+1	3651289..3652170	+	293	53714506	-	BF3219	-	methylenetetrahydrofolate dehydrogenase
3216	 48.28	0	3652238..3653869	+	543	53714507	-	BF3220	-	thiol:disulfide interchange protein
3217	 48.35	0	3653882..3655000	+	372	53714508	-	BF3221	-	capsule biosynthesis protein
3218	 42.66	0	3655345..3656373	-	342	53714509	-	BF3222	-	hypothetical protein
3219	 43.01	0	3656406..3657077	-	223	53714510	-	BF3223	-	hypothetical protein
3220	 42.57	0	3657103..3657990	-	295	53714511	-	BF3224	-	ABC transporter ATP-binding protein
3221	 42.71	0	3658018..3658593	-	191	53714512	-	BF3225	-	hypothetical protein
3222	 44.44	0	3658577..3659161	-	194	53714513	-	BF3226	-	hypothetical protein
3223	 44.89	0	3659183..3660757	-	524	53714514	-	BF3227	-	hypothetical protein
3224	 40.33	0	3660772..3661986	-	404	53714515	-	BF3228	-	putative lipoprotein
3225	 43.08	0	3662013..3664751	-	912	53714516	-	BF3229	-	putative outer membrane receptor protein
3226	 43.83	0	3665120..3666100	-	326	53714517	-	BF3230	-	hypothetical protein
3227	 47.26	0	3666202..3668046	-	614	53714518	-	BF3231	-	DNA polymerase III subunit gamma/tau
3228	 46.47	0	3668204..3668515	-	103	53714519	-	BF3232	-	hypothetical protein
3229	 48.41	0	3668494..3668838	+	114	53714520	-	BF3233	-	hypothetical protein
3230	 39.68	0	3668907..3669347	-	146	53714521	-	BF3234	-	hypothetical protein
3231	 44.93	0	3669328..3671370	-	680	53714522	-	BF3235	-	outer membrane receptor protein
3232	 42.89	0	3671374..3672273	-	299	53714523	-	BF3236	-	hypothetical protein
3233	 39.06	0	3672418..3673011	-	197	53714524	-	BF3237	-	hypothetical protein
3234	 38.89	0	3673048..3673281	-	77	53714525	-	BF3238	-	hypothetical protein
3235	 48.06	0	3673443..3674909	+	488	53714526	-	BF3239	-	aminoacyl-histidine dipeptidase
3236	 47.25	0	3675050..3676084	+	344	53714527	-	BF3240	-	hypothetical protein
3237	 42.65	0	3676069..3677238	-	389	53714528	-	BF3241	-	hypothetical protein
3238	 47.34	0	3677377..3678033	-	218	53714529	-	BF3242	-	putative translaldolase
3239	 50.77	+1	3678099..3679916	-	605	53714530	-	BF3243	-	hypothetical protein
3240	 49.56	+1	3679966..3683028	-	1020	53714531	-	BF3244	-	beta-galactosidase
3241	 50.60	+1	3683106..3685421	-	771	53714532	-	BF3246	-	beta-hexosaminidase precursor
3242	 48.27	0	3685466..3687052	-	528	53714533	-	BF3247	-	putative sulfatase
3243	 47.85	0	3687464..3688930	+	488	53714534	-	BF3248	-	arylsulfatase precursor
3244	 46.91	0	3689067..3690716	-	549	53714535	-	BF3249	-	beta-hexosaminidase precursor
3245	 49.57	+1	3690893..3693817	+	974	53714536	-	BF3250	-	two-component system sensor histidine kinase/response regulator hybrid
3246	 47.58	0	3693893..3694945	-	350	53714537	-	BF3251	-	fructose-bisphosphate aldolase
3247	 45.52	0	3695104..3695850	-	248	53714538	-	BF3252	-	phosphoglyceromutase
3248	 50.66	+1	3696007..3698349	+	780	53714539	-	BF3253	-	hypothetical protein
3249	 49.28	+1	3698490..3699944	-	484	53714540	-	BF3254	-	putative molybdenum transport ATP-binding protein
3250	 48.32	0	3700086..3701600	-	504	53714541	-	BF3255	-	N-acetylgalactosamine-6-sulfatase precursor
3251	 48.17	0	3701616..3703172	-	518	53714542	-	BF3256	-	beta-hexosaminidase precursor
3252	 45.39	0	3703273..3705138	-	621	53714543	-	BF3257	-	hypothetical protein
3253	 43.37	0	3705153..3708590	-	1145	53714544	-	BF3258	-	hypothetical protein
3254	 41.94	0	3708728..3709726	-	332	53714545	-	BF3259	-	putative anti-sigma factor
3255	 41.71	0	3709817..3710377	-	186	53714546	-	BF3260	-	RNA polymerase ECF-type sigma factor
3256	 48.08	0	3710618..3712618	-	666	53714547	-	BF3261	-	pullulanase precursor
3257	 48.15	0	3712677..3713243	-	188	161936263	ruvC	BF3262	-	Holliday junction resolvase
3258	 47.19	0	3713240..3713542	-	100	53714549	-	BF3263	-	hypothetical protein
3259	 51.01	+1	3713895..3715235	-	446	53714550	-	BF3264	-	hypothetical protein
3260	 39.52	0	3715560..3715769	-	69	53714551	-	BF3265	-	hypothetical protein
3261	 50.29	+1	3715858..3716877	+	339	53714552	pheS	BF3266	-	phenylalanyl-tRNA synthetase subunit alpha
3262	 51.29	+1	3716944..3718185	+	413	53714553	-	BF3267	-	putative transmembrane transport protein
3263	 49.12	+1	3718182..3718859	+	225	53714554	-	BF3268	-	endonuclease III
3264	 46.59	0	3718949..3720208	+	419	53714555	pgk	BF3269	-	phosphoglycerate kinase
3265	 47.64	0	3720393..3721238	+	281	53714556	-	BF3270	-	putative thiamine biosynthesis protein
3266	 48.17	0	3721255..3722292	+	345	53714557	-	BF3271	-	hypothetical protein
3267	 47.27	0	3722316..3723506	+	396	53714558	-	BF3272	-	putative membrane-associated protein
3268	 46.84	0	3723510..3725708	+	732	53714559	-	BF3273	-	hypothetical protein
3269	 38.24	0	3725954..3726463	+	169	53714560	-	BF3274	-	hypothetical protein
3270	 42.74	0	3726788..3727627	-	279	53714561	-	BF3275	-	beta-glucanase precursor
3271	 46.29	0	3727995..3729515	+	506	53714562	-	BF3276	-	putative peptide synthetase
3272	 37.45	-1	3729530..3729772	+	80	53714563	-	BF3277	-	acyl carrier protein
3273	 46.85	0	3729776..3731158	+	460	53714564	-	BF3278	-	membrane-bound O-acyltransferase
3274	 45.59	0	3731177..3732277	+	366	53714565	-	BF3279	-	hypothetical protein
3275	 35.62	-1	3732321..3732713	+	130	53714566	-	BF3280	-	hypothetical protein
3276	 47.42	0	3732906..3733487	-	193	53714567	maf	BF3281	-	Maf-like protein
3277	 51.15	+1	3733519..3734040	-	173	53714568	-	BF3282	-	putative hydrolase
3278	 49.75	+1	3734061..3734852	-	263	53714569	-	BF3283	-	hypothetical protein
3279	 43.24	0	3734849..3735181	-	110	53714570	-	BF3284	-	hypothetical protein
3280	 47.11	0	3735184..3735720	-	178	53714571	-	BF3285	-	putative NAD(P)H nitroreductase
3281	 47.51	0	3735887..3736429	-	180	53714572	-	BF3286	-	putative carbonic anhydrase
3282	 50.00	+1	3736547..3737530	+	327	53714573	-	BF3287	-	hypothetical protein
3283	 44.94	0	3737763..3738167	+	134	53714574	-	BF3288	-	lactoylglutathione lyase and related protein
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.