IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2941	 34.91	-1	3346306..3346875	-	189	53714232	-	BF2942	-	hypothetical protein
2942	 40.68	0	3347468..3350380	+	970	53714233	-	BF2943	-	helicase
2943	 36.59	-1	3350566..3350964	+	132	53714234	-	BF2944	-	hypothetical protein
2944	 41.27	0	3350970..3351284	+	104	53714235	-	BF2945	-	hypothetical protein
2945	 50.00	+1	3351536..3351727	+	63	53714236	-	BF2946	-	hypothetical protein
2946	 41.67	0	3351721..3351912	+	63	53714237	-	BF2947	-	hypothetical protein
2947	 41.94	0	3352172..3352636	+	154	53714238	-	BF2948	-	hypothetical protein
2948	 42.90	0	3352783..3353451	+	222	53714239	-	BF2949	-	hypothetical protein
2949	 41.95	0	3353507..3354481	+	324	53714240	-	BF2950	-	dihydroorotate dehydrogenase 2
2950	 43.40	0	3354595..3355389	-	264	53714241	-	BF2951	-	putative phage-related protein
2951	 39.23	0	3355411..3355749	-	112	53714242	-	BF2952	-	hypothetical protein
2952	 41.03	0	3355756..3356262	-	168	53714243	-	BF2953	-	hypothetical protein
2953	 45.15	0	3356274..3356510	-	78	53714244	-	BF2954	-	hypothetical protein
2954	 43.90	0	3356507..3357121	-	204	53714245	-	BF2955	-	hypothetical protein
2955	 39.61	0	3357138..3357950	-	270	53714246	-	BF2956	-	hypothetical protein
2956	 44.44	0	3357979..3358851	-	290	53714247	-	BF2957	-	hypothetical protein
2957	 38.31	0	3358985..3359386	-	133	53714248	-	BF2958	-	putative two-component system response regulator
2958	 40.29	0	3359427..3359771	-	114	53714249	-	BF2959	-	hypothetical protein
2959	 39.60	0	3360002..3360895	-	297	53714250	-	BF2960	-	hypothetical protein
2960	 44.32	0	3360900..3363329	-	809	53714251	-	BF2961	-	putative peptide synthetase
2961	 43.90	0	3363342..3365708	-	788	53714252	-	BF2962	-	TonB-dependent outer membrane protein
2962	 43.13	0	3365705..3366541	-	278	53714253	-	BF2963	-	hypothetical protein
2963	 43.48	0	3366564..3369401	-	945	53714254	-	BF2964	-	hypothetical protein
2964	 45.94	0	3369398..3370999	-	533	53714255	-	BF2965	-	hypothetical protein
2965	 41.96	0	3370996..3371424	-	142	53714256	-	BF2966	-	sigma regulatory factor-histidine kinase
2966	 40.85	0	3371439..3371744	-	101	53714257	-	BF2967	-	putative anti-sigma B factor antagonist
2967	 43.85	0	3371763..3372932	-	389	53714258	-	BF2968	-	sigma factor SigB regulation protein RsbU
2968	 32.05	-1	3373280..3373903	+	207	53714259	-	BF2969	-	hypothetical protein
2969	 33.04	-1	3373939..3374274	+	111	53714260	-	BF2970	-	hypothetical protein
2970	 41.95	0	3374256..3374789	+	177	53714261	-	BF2971	-	hypothetical protein
2971	 42.73	0	3374880..3376784	-	634	53714262	-	BF2972	-	putative nucleotide-diphosphate sugar epimerase
2972	 44.57	0	3376946..3378271	-	441	53714263	-	BF2973	-	PhoH-like protein
2973	 46.55	0	3378401..3379777	+	458	53714264	-	BF2974	-	folylpolyglutamate synthase
2974	 48.27	0	3379745..3380119	-	124	53714265	-	BF2975	-	putative translation initiation inhibitor
2975	 44.99	0	3380417..3382123	-	568	53714266	-	BF2976	-	TPR repeat-containing protein
2976	 45.21	0	3382144..3382884	-	246	53714267	-	BF2977	-	tRNA/rRNA methyltransferase
2977	 46.38	0	3382945..3384630	-	561	53714268	-	BF2978	-	DNA repair protein RecN
2978	 47.15	0	3384634..3385827	-	397	53714269	-	BF2979	-	flavoprotein
2979	 42.76	0	3385830..3386603	-	257	53714270	-	BF2980	-	DNA polymerase III epsilon chain
2980	 44.98	0	3386734..3387858	-	374	53714271	-	BF2981	-	DNA polymerase III beta chain
2981	 48.53	0	3388011..3388385	+	124	53714272	-	BF2982	-	hypothetical protein
2982	 45.30	0	3388463..3390100	-	545	53714273	-	BF2983	-	hypothetical protein
2983	 47.69	0	3390193..3390951	-	252	53714274	-	BF2984	-	putative hydrolase
2984	 50.65	+1	3391012..3392010	-	332	53714275	murB	BF2985	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2985	 44.91	0	3392030..3392884	-	284	53714276	-	BF2986	-	hypothetical protein
2986	 48.11	0	3392980..3393933	-	317	53714277	-	BF2987	-	NAD-dependent nucleotide-diphosphate-sugar epimerase
2987	 49.07	+1	3394070..3395257	+	395	53714278	-	BF2988	-	2-amino-3-ketobutyrate coenzyme A ligase
2988	 47.90	0	3395306..3395710	+	134	53714279	-	BF2989	-	hypothetical protein
2989	 43.79	0	3395717..3395869	+	50	53714280	-	BF2990	-	hypothetical protein
2990	 49.23	+1	3395850..3396761	-	303	53714281	-	BF2991	-	hypothetical protein
2991	 50.14	+1	3396879..3397925	-	348	53714282	-	BF2992	-	hypothetical protein
2992	 49.67	+1	3397939..3400062	-	707	53714283	-	BF2993	-	hypothetical protein
2993	 53.51	+1	3400097..3401122	-	341	53714284	-	BF2994	-	hypothetical protein
2994	 57.01	+2	3401258..3402811	-	517	53714285	-	BF2995	-	hypothetical protein
2995	 56.32	+2	3402798..3403850	-	350	53714286	-	BF2996	-	hypothetical protein
2996	 47.35	0	3404030..3405691	-	553	53714287	-	BF2997	-	hypothetical protein
2997	 58.62	+2	3405717..3407120	-	467	53714288	-	BF2998	-	hypothetical protein
2998	 52.87	+1	3407129..3407686	-	185	53714289	-	BF2999	-	hypothetical protein
2999	 48.00	0	3407723..3408097	-	124	53714290	-	BF3000	-	hypothetical protein
3000	 43.43	0	3408543..3408740	-	65	53714291	-	BF3002	-	hypothetical protein
3001	 55.77	+2	3408958..3410187	+	409	53714292	-	BF3003	-	tyrosine type site-specific recombinase
3002	 57.67	+2	3410207..3411418	+	403	53714293	-	BF3004	-	tyrosine type site-specific recombinase
3003	 53.92	+1	3411444..3412196	+	250	53714294	-	BF3005	-	hypothetical protein
3004	 43.45	0	3412291..3412458	+	55	53714295	-	BF3007	-	hypothetical protein
3005	 38.29	0	3412654..3416463	+	1269	53714296	-	BF3008	-	putative type IIS restriction/modification enzyme
3006	 34.94	-1	3416460..3416957	-	165	53714297	-	BF3009	-	hypothetical protein
3007	 39.09	0	3416930..3417172	-	80	53714298	-	BF3010	-	hypothetical protein
3008	 43.26	0	3417111..3417392	-	93	53714299	-	BF3011	-	hypothetical protein
3009	 36.12	-1	3417404..3418012	-	202	53714300	mpi	BF3012	-	multiple promoter invertase
3010	 49.76	+1	3418533..3418946	+	137	53714301	-	BF3013	-	hypothetical protein
3011	 52.27	+1	3418844..3419239	+	131	53714302	-	BF3014	-	hypothetical protein
3012	 35.87	-1	3419476..3420501	+	341	53714303	-	BF3015	-	IS116 family transposase
3013	 48.63	0	3420760..3420942	-	60	53714304	-	BF3016	-	hypothetical protein
3014	 49.15	+1	3421084..3421494	-	136	53714305	-	BF3017	-	hypothetical protein
3015	 53.55	+1	3421595..3422524	-	309	53714306	-	BF3018	-	hypothetical protein
3016	 56.91	+2	3422671..3423459	-	262	53714307	-	BF3019	-	protein found in conjugate transposon TraA
3017	 59.69	+2	3423487..3423873	-	128	53714308	-	BF3020	-	hypothetical protein
3018	 60.19	+2	3423903..3424319	-	138	53714309	-	BF3021	-	hypothetical protein
3019	 49.05	+1	3424518..3424727	-	69	53714310	-	BF3022	-	hypothetical protein
3020	 41.56	0	3424841..3425071	-	76	53714311	-	BF3023	-	hypothetical protein
3021	 43.61	0	3425099..3425458	-	119	53714312	-	BF3024	-	hypothetical protein
3022	 40.04	0	3425675..3426241	-	188	53714313	-	BF3025	-	hypothetical protein
3023	 46.97	0	3426238..3427029	-	263	53714314	-	BF3026	-	iron(III) ABC transporter ATP-binding protein
3024	 50.66	+1	3426993..3427973	-	326	53714315	-	BF3027	-	iron(III) ABC transporter permease protein
3025	 50.70	+1	3427974..3429113	-	379	53714316	-	BF3028	-	iron(III) ABC transporter periplasmic iron-binding protein
3026	 52.09	+1	3429125..3431203	-	692	53714317	-	BF3029	-	putative TonB-dependent outer membrane receptor
3027	 49.41	+1	3431222..3432322	-	366	53714318	-	BF3030	-	putative surface layer protein
3028	 43.23	0	3432351..3434441	-	696	53714319	-	BF3031	-	putative cell wall biogenesis protein
3029	 47.25	0	3434456..3436237	-	593	53714320	-	BF3032	-	putative cell surface protein
3030	 45.86	0	3436302..3437219	-	305	53714321	-	BF3033	-	hypothetical protein
3031	 37.63	0	3437475..3437660	-	61	53714322	-	BF3034	-	hypothetical protein
3032	 48.18	0	3437953..3438282	-	109	53714323	-	BF3035	-	hypothetical protein
3033	 47.20	0	3438329..3439222	-	297	53714324	-	BF3036	-	tyrosine type site-specific recombinase
3034	 31.72	-2	3439451..3439636	+	61	53714325	-	BF3037	-	hypothetical protein
3035	 53.51	+1	3439652..3440449	-	265	53714326	-	BF3038	-	tyrosine type site-specific recombinase
3036	 48.80	+1	3440657..3441031	+	124	53714327	-	BF3039	-	hypothetical protein
3037	 34.04	-1	3441195..3441761	-	188	53714328	-	BF3040	-	hypothetical protein
3038	 45.35	0	3442122..3442637	-	171	53714329	-	BF3041	-	hypothetical protein
3039	 41.42	0	3442631..3442939	-	102	53714330	-	BF3042	-	hypothetical protein
3040	 36.48	-1	3443004..3443162	-	52	53714331	-	BF3043	-	hypothetical protein
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.