IslandPathversion 1.0

IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 43.19 STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2851	 30.43	-2	3267113..3268006	+	297	53714142	-	BF2851	-	hypothetical protein
2852	 61.61	+2	3268020..3272408	+	1462	53714143	-	BF2852	-	putative RhsD protein
2853	 27.24	-2	3272405..3272995	+	196	53714144	-	BF2853	-	hypothetical protein
2854	 39.44	0	3273075..3274565	+	496	53714145	-	BF2854	-	hypothetical protein
2855	 37.44	-1	3274897..3275286	+	129	53714146	-	BF2855	-	hypothetical protein
2856	 29.06	-2	3275265..3275498	+	77	53714147	-	BF2856	-	hypothetical protein
2857	 35.03	-1	3275509..3277398	+	629	53714148	-	BF2857	-	hypothetical protein
2858	 47.33	0	3277640..3282619	-	1659	53714149	-	BF2858	-	putative DNA methylase
2859	 41.58	0	3283158..3283715	+	185	53714150	-	BF2859	-	hypothetical protein
2860	 39.71	0	3283721..3284206	+	161	53714151	-	BF2860	-	hypothetical protein
2861	 35.59	-1	3284226..3284579	+	117	53714152	-	BF2861	-	hypothetical protein
2862	 42.76	0	3284719..3285291	-	190	53714153	-	BF2862	-	hypothetical protein
2863	 36.94	-1	3285304..3285525	-	73	53714154	-	BF2863	-	hypothetical protein
2864	 40.80	0	3285998..3286198	+	66	53714155	-	BF2864	-	hypothetical protein
2865	 51.44	+1	3286378..3286863	+	161	53714156	-	BF2865	-	hypothetical protein
2866	 36.72	-1	3286916..3287092	-	58	53714157	-	BF2866	-	hypothetical protein
2867	 45.83	0	3287205..3287708	-	167	53714158	-	BF2867	-	hypothetical protein
2868	 44.80	0	3287710..3288276	-	188	53714159	-	BF2868	-	putative ribose phosphate pyrophosphokinase
2869	 47.62	0	3288569..3288736	-	55	53714160	-	BF2869	-	hypothetical protein
2870	 49.35	+1	3288737..3288967	-	76	53714161	-	BF2870	-	hypothetical protein
2871	 35.22	-1	3288981..3289139	+	52	53714162	-	BF2871	-	hypothetical protein
2872	 47.19	0	3289273..3290109	+	278	53714163	-	BF2872	-	hypothetical protein
2873	 48.18	0	3290142..3290801	-	219	53714164	-	BF2873	-	hypothetical protein
2874	 49.93	+1	3291023..3291781	+	252	53714165	-	BF2874	-	hypothetical protein
2875	 49.33	+1	3291802..3292026	+	74	53714166	-	BF2875	-	hypothetical protein
2876	 51.56	+1	3292052..3293620	+	522	53714167	-	BF2876	-	hypothetical protein
2877	 46.75	0	3293625..3295316	+	563	53714168	-	BF2877	-	hypothetical protein
2878	 46.91	0	3295329..3295814	+	161	53714169	-	BF2878	-	hypothetical protein
2879	 48.99	+1	3295795..3296490	+	231	53714170	-	BF2879	-	hypothetical protein
2880	 46.43	0	3296503..3297189	+	228	53714171	-	BF2880	-	hypothetical protein
2881	 51.01	+1	3297202..3297846	+	214	53714172	-	BF2881	-	hypothetical protein
2882	 48.62	0	3297879..3298709	+	276	53714173	-	BF2882	-	hypothetical protein
2883	 40.52	0	3298862..3299014	+	50	53714174	-	BF2883	-	hypothetical protein
2884	 48.69	0	3299029..3300819	+	596	53714175	-	BF2884	-	hypothetical protein
2885	 47.79	0	3300892..3303090	+	732	53714176	-	BF2885	-	putative DNA primase
2886	 47.59	0	3303102..3304658	+	518	53714177	-	BF2886	-	putative hemagglutinin
2887	 49.72	+1	3304671..3304847	+	58	53714178	-	BF2887	-	hypothetical protein
2888	 43.79	0	3304930..3305541	+	203	53714179	-	BF2888	-	hypothetical protein
2889	 45.34	0	3305547..3307229	+	560	53714180	-	BF2889	-	putative DNA primase
2890	 39.52	0	3307284..3307655	-	123	53714181	-	BF2890	-	hypothetical protein
2891	 34.74	-1	3307666..3307950	-	94	53714182	-	BF2891	-	hypothetical protein
2892	 37.95	0	3307955..3308149	-	64	53714183	-	BF2892	-	hypothetical protein
2893	 39.71	0	3308581..3309066	-	161	53714184	-	BF2893	-	hypothetical protein
2894	 40.83	0	3309082..3309321	+	79	53714185	-	BF2894	-	hypothetical protein
2895	 42.15	0	3309333..3309593	+	86	53714186	-	BF2895	-	hypothetical protein
2896	 40.62	0	3309523..3309879	-	118	53714187	-	BF2896	-	hypothetical protein
2897	 40.76	0	3310055..3310525	-	156	53714188	-	BF2897	-	hypothetical protein
2898	 43.98	0	3311047..3311262	+	71	53714189	-	BF2898	-	hypothetical protein
2899	 46.64	0	3311298..3312740	-	480	53714190	-	BF2899	-	putative outer membrane protein
2900	 47.19	0	3312794..3314251	-	485	53714191	-	BF2900	-	hypothetical protein
2901	 45.21	0	3314458..3315324	-	288	53714192	-	BF2901	-	hypothetical protein
2902	 41.94	0	3315343..3315900	-	185	53714193	-	BF2902	-	hypothetical protein
2903	 42.74	0	3315897..3316268	-	123	53714194	-	BF2903	-	hypothetical protein
2904	 44.37	0	3316303..3316755	-	150	53714195	-	BF2904	-	hypothetical protein
2905	 42.95	0	3316767..3317816	-	349	53714196	-	BF2905	-	hypothetical protein
2906	 44.34	0	3318051..3318695	+	214	53714197	-	BF2906	-	serine type site-specific recombinase
2907	 43.59	0	3318959..3319114	+	51	53714198	-	BF2907	-	hypothetical protein
2908	 41.70	0	3319064..3319744	-	226	53714199	-	BF2908	-	hypothetical protein
2909	 37.65	0	3320216..3320470	-	84	53714200	-	BF2909	-	hypothetical protein
2910	 41.32	0	3320962..3321462	-	166	53714201	-	BF2910	-	hypothetical protein
2911	 40.21	0	3321549..3321839	-	96	53714202	-	BF2911	-	hypothetical protein
2912	 38.73	0	3321881..3322195	-	104	53714203	-	BF2912	-	hypothetical protein
2913	 51.48	+1	3322264..3322533	-	89	53714204	-	BF2913	-	hypothetical protein
2914	 44.32	0	3322660..3323187	-	175	53714205	-	BF2914	-	hypothetical protein
2915	 44.88	0	3323675..3324055	-	126	53714206	-	BF2915	-	putative single strand binding protein
2916	 39.16	0	3324052..3324360	-	102	53714207	-	BF2916	-	hypothetical protein
2917	 43.96	0	3324487..3324759	+	90	53714208	-	BF2917	-	hypothetical protein
2918	 40.61	0	3324753..3325013	-	86	53714209	-	BF2918	-	hypothetical protein
2919	 40.91	0	3325028..3325357	-	109	53714210	-	BF2919	-	hypothetical protein
2920	 36.96	-1	3325540..3325842	-	100	53714211	-	BF2920	-	hypothetical protein
2921	 45.33	0	3325914..3326213	+	99	53714212	-	BF2921	-	hypothetical protein
2922	 32.74	-1	3326627..3327133	+	168	53714213	-	BF2922	-	alpha-1,2-fucosyltransferase
2923	 31.01	-2	3327140..3328258	+	372	53714214	-	BF2923	-	putative glycosyltransferase
2924	 34.99	-1	3328264..3329352	+	362	53714215	-	BF2924	-	putative glycosyltransferase
2925	 35.65	-1	3329318..3330439	+	373	53714216	-	BF2925	-	putative glycosyltransferase
2926	 44.86	0	3330609..3331328	+	239	53714217	-	BF2926	-	putative beta-1,4-N-acetyl- mannosaminyltransferase
2927	 43.12	0	3331338..3332042	+	234	53714218	-	BF2927	-	hypothetical protein
2928	 49.92	+1	3332048..3333289	+	413	53714219	-	BF2928	-	hypothetical protein
2929	 47.09	0	3333315..3334601	+	428	53714220	-	BF2929	-	hypothetical protein
2930	 45.31	0	3334641..3335216	+	191	53714221	-	BF2930	-	hypothetical protein
2931	 38.99	0	3335322..3335834	+	170	53714222	-	BF2931	-	hypothetical protein
2932	 44.95	0	3335846..3337162	+	438	53714223	-	BF2932	-	hypothetical protein
2933	 43.08	0	3337170..3338267	+	365	53714224	-	BF2933	-	major outer membrane protein OmpA
2934	 45.45	0	3338295..3338723	+	142	53714225	-	BF2934	-	hypothetical protein
2935	 43.33	0	3338739..3339788	+	349	53714226	-	BF2935	-	mannose-1-phosphate guanylyltransferase
2936	 46.04	0	3340216..3341451	-	411	53714227	-	BF2936	-	oxaloacetate decarboxylase beta chain
2937	 46.13	0	3341451..3343286	-	611	53714228	-	BF2937	-	pyruvate carboxylase subunit B
2938	 43.80	0	3343321..3343578	-	85	53714229	-	BF2938	-	putative oxaloacetate decarboxylase gamma chain 1
2939	 43.59	0	3343753..3345390	-	545	53714230	-	BF2939	-	2',3'-cyclic nucleotide 2'-phosphodiesterase
2940	 31.07	-2	3345376..3345552	+	58	53714231	-	BF2940	-	hypothetical protein
2941	 34.91	-1	3346306..3346875	-	189	53714232	-	BF2942	-	hypothetical protein
2942	 40.68	0	3347468..3350380	+	970	53714233	-	BF2943	-	helicase
2943	 36.59	-1	3350566..3350964	+	132	53714234	-	BF2944	-	hypothetical protein
2944	 41.27	0	3350970..3351284	+	104	53714235	-	BF2945	-	hypothetical protein
2945	 50.00	+1	3351536..3351727	+	63	53714236	-	BF2946	-	hypothetical protein
2946	 41.67	0	3351721..3351912	+	63	53714237	-	BF2947	-	hypothetical protein
2947	 41.94	0	3352172..3352636	+	154	53714238	-	BF2948	-	hypothetical protein
2948	 42.90	0	3352783..3353451	+	222	53714239	-	BF2949	-	hypothetical protein
2949	 41.95	0	3353507..3354481	+	324	53714240	-	BF2950	-	dihydroorotate dehydrogenase 2
2950	 43.40	0	3354595..3355389	-	264	53714241	-	BF2951	-	putative phage-related protein
43.19	MEAN

5.60	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.