IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2801	 51.24	+1	3213465..3214190	+	241	53714092	-	BF2800	-	hypothetical protein
2802	 38.52	0	3214395..3215165	+	256	53714093	-	BF2801	-	putative site-specific DNA-methyltransferase
2803	 51.10	+1	3215234..3216004	+	256	53714094	-	BF2802	-	hypothetical protein
2804	 50.62	+1	3216019..3217152	+	377	53714095	-	BF2803	-	hypothetical protein
2805	 39.76	0	3217152..3217571	+	139	53714096	-	BF2804	-	hypothetical protein
2806	 46.99	0	3217578..3218192	+	204	53714097	-	BF2805	-	protein found in conjugate transposon TraK
2807	 53.23	+1	3218205..3218576	+	123	53714098	-	BF2806	-	hypothetical protein
2808	 49.07	+1	3218591..3219073	+	160	53714099	-	BF2807	-	hypothetical protein
2809	 49.36	+1	3219057..3220229	+	390	53714100	-	BF2808	-	protein found in conjugate transposon TraM
2810	 43.45	0	3220242..3220577	+	111	53714101	-	BF2809	-	hypothetical protein
2811	 39.77	0	3220621..3221226	+	201	53714102	-	BF2810	-	hypothetical protein
2812	 46.81	0	3221239..3222084	+	281	53714103	-	BF2811	-	protein found in conjugate transposon TraN
2813	 51.85	+1	3222081..3222593	+	170	53714104	-	BF2812	-	hypothetical protein
2814	 51.45	+1	3222615..3223271	+	218	53714105	-	BF2813	-	hypothetical protein
2815	 39.43	0	3223285..3224022	+	245	53714106	-	BF2814	-	hypothetical protein
2816	 46.50	0	3224026..3226212	+	728	53714107	-	BF2815	-	putative mobilization protein
2817	 40.32	0	3226382..3227983	-	533	53714108	-	BF2816	-	ISNCY family transposase
2818	 42.30	0	3228146..3228502	-	118	53714109	-	BF2817	-	hypothetical protein
2819	 41.13	0	3228479..3228850	+	123	53714110	-	BF2818	-	hypothetical protein
2820	 41.84	0	3228816..3229097	-	93	53714111	-	BF2819	-	hypothetical protein
2821	 45.24	0	3229170..3229421	+	83	53714112	-	BF2820	-	hypothetical protein
2822	 53.46	+1	3229387..3229545	+	52	53714113	-	BF2821	-	hypothetical protein
2823	 45.53	0	3229600..3231345	-	581	53714114	-	BF2822	-	putative partitioning protein
2824	 42.78	0	3231436..3231795	-	119	53714115	-	BF2823	-	hypothetical protein
2825	 46.44	0	3231894..3233213	+	439	53714116	-	BF2824	-	putative ATPase
2826	 40.39	0	3233284..3233538	-	84	53714117	-	BF2825	-	hypothetical protein
2827	 46.03	0	3233545..3234300	-	251	53714118	-	BF2826	-	chromosome-partitioning ATPase
2828	 45.17	0	3234541..3234954	-	137	53714119	-	BF2827	-	putative single stranded DNA binding protein
2829	 35.01	-1	3235737..3236513	-	258	53714120	-	BF2828	-	putative transcriptional regulator
2830	 28.99	-2	3237083..3237658	-	191	53714121	-	BF2829	-	hypothetical protein
2831	 33.17	-1	3237664..3238278	-	204	53714122	-	BF2830	-	hypothetical protein
2832	 43.99	0	3238391..3239770	-	459	53714123	-	BF2831	-	hypothetical protein
2833	 42.52	0	3239783..3240250	-	155	53714124	-	BF2832	-	hypothetical protein
2834	 38.06	0	3240418..3240840	+	140	53714125	-	BF2833	-	hypothetical protein
2835	 40.93	0	3240848..3242623	+	591	53714126	-	BF2834	-	hypothetical protein
2836	 43.83	0	3242620..3245058	+	812	53714127	-	BF2835	-	ATP-dependent Clp protease ATP-binding subunit
2837	 40.81	0	3245043..3245978	+	311	53714128	-	BF2836	-	hypothetical protein
2838	 41.52	0	3245992..3246870	+	292	53714129	-	BF2837	-	hypothetical protein
2839	 44.04	0	3246874..3248022	+	382	53714130	-	BF2838	-	hypothetical protein
2840	 40.36	0	3248043..3248540	+	165	53714131	-	BF2839	-	hypothetical protein
2841	 40.27	0	3248537..3248983	+	148	53714132	-	BF2840	-	hypothetical protein
2842	 41.19	0	3248994..3249935	+	313	53714133	-	BF2841	-	hypothetical protein
2843	 43.21	0	3249932..3252280	+	782	53714134	-	BF2842	-	hypothetical protein
2844	 44.28	0	3252286..3253089	+	267	53714135	-	BF2843	-	hypothetical protein
2845	 42.93	0	3253604..3253999	+	131	53714136	-	BF2844	-	hypothetical protein
2846	 48.92	+1	3254110..3255873	+	587	53714137	-	BF2845	-	hypothetical protein
2847	 42.78	0	3255913..3257256	+	447	53714138	-	BF2846	-	hypothetical protein
2848	 61.55	+2	3257528..3261982	+	1484	53714139	-	BF2847	-	putative Rhs protein
2849	 26.22	-2	3261984..3262658	+	224	53714140	-	BF2849	-	hypothetical protein
2850	 61.27	+2	3262662..3267107	+	1481	53714141	-	BF2850	-	putative RhsD protein
2851	 30.43	-2	3267113..3268006	+	297	53714142	-	BF2851	-	hypothetical protein
2852	 61.61	+2	3268020..3272408	+	1462	53714143	-	BF2852	-	putative RhsD protein
2853	 27.24	-2	3272405..3272995	+	196	53714144	-	BF2853	-	hypothetical protein
2854	 39.44	0	3273075..3274565	+	496	53714145	-	BF2854	-	hypothetical protein
2855	 37.44	-1	3274897..3275286	+	129	53714146	-	BF2855	-	hypothetical protein
2856	 29.06	-2	3275265..3275498	+	77	53714147	-	BF2856	-	hypothetical protein
2857	 35.03	-1	3275509..3277398	+	629	53714148	-	BF2857	-	hypothetical protein
2858	 47.33	0	3277640..3282619	-	1659	53714149	-	BF2858	-	putative DNA methylase
2859	 41.58	0	3283158..3283715	+	185	53714150	-	BF2859	-	hypothetical protein
2860	 39.71	0	3283721..3284206	+	161	53714151	-	BF2860	-	hypothetical protein
2861	 35.59	-1	3284226..3284579	+	117	53714152	-	BF2861	-	hypothetical protein
2862	 42.76	0	3284719..3285291	-	190	53714153	-	BF2862	-	hypothetical protein
2863	 36.94	-1	3285304..3285525	-	73	53714154	-	BF2863	-	hypothetical protein
2864	 40.80	0	3285998..3286198	+	66	53714155	-	BF2864	-	hypothetical protein
2865	 51.44	+1	3286378..3286863	+	161	53714156	-	BF2865	-	hypothetical protein
2866	 36.72	-1	3286916..3287092	-	58	53714157	-	BF2866	-	hypothetical protein
2867	 45.83	0	3287205..3287708	-	167	53714158	-	BF2867	-	hypothetical protein
2868	 44.80	0	3287710..3288276	-	188	53714159	-	BF2868	-	putative ribose phosphate pyrophosphokinase
2869	 47.62	0	3288569..3288736	-	55	53714160	-	BF2869	-	hypothetical protein
2870	 49.35	+1	3288737..3288967	-	76	53714161	-	BF2870	-	hypothetical protein
2871	 35.22	-1	3288981..3289139	+	52	53714162	-	BF2871	-	hypothetical protein
2872	 47.19	0	3289273..3290109	+	278	53714163	-	BF2872	-	hypothetical protein
2873	 48.18	0	3290142..3290801	-	219	53714164	-	BF2873	-	hypothetical protein
2874	 49.93	+1	3291023..3291781	+	252	53714165	-	BF2874	-	hypothetical protein
2875	 49.33	+1	3291802..3292026	+	74	53714166	-	BF2875	-	hypothetical protein
2876	 51.56	+1	3292052..3293620	+	522	53714167	-	BF2876	-	hypothetical protein
2877	 46.75	0	3293625..3295316	+	563	53714168	-	BF2877	-	hypothetical protein
2878	 46.91	0	3295329..3295814	+	161	53714169	-	BF2878	-	hypothetical protein
2879	 48.99	+1	3295795..3296490	+	231	53714170	-	BF2879	-	hypothetical protein
2880	 46.43	0	3296503..3297189	+	228	53714171	-	BF2880	-	hypothetical protein
2881	 51.01	+1	3297202..3297846	+	214	53714172	-	BF2881	-	hypothetical protein
2882	 48.62	0	3297879..3298709	+	276	53714173	-	BF2882	-	hypothetical protein
2883	 40.52	0	3298862..3299014	+	50	53714174	-	BF2883	-	hypothetical protein
2884	 48.69	0	3299029..3300819	+	596	53714175	-	BF2884	-	hypothetical protein
2885	 47.79	0	3300892..3303090	+	732	53714176	-	BF2885	-	putative DNA primase
2886	 47.59	0	3303102..3304658	+	518	53714177	-	BF2886	-	putative hemagglutinin
2887	 49.72	+1	3304671..3304847	+	58	53714178	-	BF2887	-	hypothetical protein
2888	 43.79	0	3304930..3305541	+	203	53714179	-	BF2888	-	hypothetical protein
2889	 45.34	0	3305547..3307229	+	560	53714180	-	BF2889	-	putative DNA primase
2890	 39.52	0	3307284..3307655	-	123	53714181	-	BF2890	-	hypothetical protein
2891	 34.74	-1	3307666..3307950	-	94	53714182	-	BF2891	-	hypothetical protein
2892	 37.95	0	3307955..3308149	-	64	53714183	-	BF2892	-	hypothetical protein
2893	 39.71	0	3308581..3309066	-	161	53714184	-	BF2893	-	hypothetical protein
2894	 40.83	0	3309082..3309321	+	79	53714185	-	BF2894	-	hypothetical protein
2895	 42.15	0	3309333..3309593	+	86	53714186	-	BF2895	-	hypothetical protein
2896	 40.62	0	3309523..3309879	-	118	53714187	-	BF2896	-	hypothetical protein
2897	 40.76	0	3310055..3310525	-	156	53714188	-	BF2897	-	hypothetical protein
2898	 43.98	0	3311047..3311262	+	71	53714189	-	BF2898	-	hypothetical protein
2899	 46.64	0	3311298..3312740	-	480	53714190	-	BF2899	-	putative outer membrane protein
2900	 47.19	0	3312794..3314251	-	485	53714191	-	BF2900	-	hypothetical protein
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.