IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
204	 38.14	0	222190..222480	+	96	53711495	-	BF0204	-	hypothetical protein
205	 36.31	-1	222539..223846	+	435	53711496	-	BF0205	-	hypothetical protein
206	 33.33	-1	223871..224176	+	101	53711497	-	BF0206	-	hypothetical protein
207	 39.58	0	224358..224885	+	175	53711498	-	BF0207	-	hypothetical protein
208	 34.43	-1	225098..226378	+	426	53711499	-	BF0208	-	hypothetical protein
209	 46.58	0	226735..227421	+	228	53711500	-	BF0209	-	two-component system response regulator
210	 45.61	0	227418..228785	+	455	53711501	-	BF0210	-	two-component system sensor histidine kinase
211	 46.64	0	228945..231596	+	883	53711502	-	BF0211	-	Mg2+ transport ATPase protein B
212	 45.67	0	231661..232746	+	361	53711503	-	BF0212	-	hypothetical protein
213	 40.85	0	232967..233764	+	265	53711504	-	BF0213	-	hypothetical protein
214	 44.15	0	233811..236861	-	1016	53711505	-	BF0214	-	Snf2 family helicase
215	 42.56	0	236913..238007	+	364	53711506	-	BF0215	-	tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
216	 43.65	0	238067..239578	-	503	53711507	-	BF0216	-	putative auxin-regulated protein
217	 45.50	0	239748..240758	+	336	53711508	pfkA	BF0217	-	6-phosphofructokinase
218	 41.81	0	240777..241649	-	290	53711509	-	BF0218	-	ribonuclease III
219	 45.53	0	241654..242916	-	420	53711510	-	BF0219	-	3-oxoacyl-[acyl-carrier-protein] synthase II
220	 40.51	0	242932..243168	-	78	53711511	-	BF0220	-	acyl carrier protein
221	 42.76	0	243318..243890	+	190	53711512	-	BF0221	-	phosphoribosylglycinamide formyltransferase
222	 44.70	0	243928..244974	-	348	53711513	-	BF0222	-	erythronate-4-phosphate dehydrogenase
223	 41.70	0	245107..245823	+	238	53711514	-	BF0223	-	hypothetical protein
224	 40.90	0	245828..246541	+	237	53711515	-	BF0224	-	hypothetical protein
225	 37.61	0	246510..247445	-	311	53711516	-	BF0225	-	lipopolysaccharide 1,2-glucosyltransferase
226	 39.69	0	247473..248495	-	340	53711517	-	BF0226	-	lipopolysaccharide core biosynthesis protein LpsA
227	 40.05	0	248498..249301	-	267	53711518	-	BF0227	-	glycosyltransferase
228	 35.95	-1	249422..250492	-	356	53711519	-	BF0228	-	putative glycosyltransferase
229	 41.83	0	250913..252748	+	611	53711520	-	BF0229	-	ABC transporter ATP-binding protein
230	 42.58	0	252751..253983	+	410	53711521	-	BF0230	-	hypothetical protein
231	 45.24	0	253987..254616	-	209	53711522	-	BF0231	-	ribonuclease H-related protein
232	 44.78	0	254736..255338	+	200	53711523	-	BF0232	-	nitroreductase
233	 41.53	0	255331..255513	-	60	53711524	-	BF0233	-	hypothetical protein
234	 36.27	-1	255967..256170	+	67	53711525	-	BF0234	-	hypothetical protein
235	 45.19	0	256298..256837	+	179	53711526	-	BF0235	-	shikimate kinase
236	 45.78	0	256984..259482	+	832	53711527	-	BF0236	-	hypothetical protein
237	 43.18	0	259490..261256	+	588	53711528	-	BF0237	-	heat shock protein HtpG
238	 40.74	0	261265..262344	+	359	53711529	-	BF0238	-	hypothetical protein
239	 44.06	0	262402..264294	+	630	53711530	-	BF0239	-	arginine decarboxylase
240	 44.02	0	264422..265207	+	261	53711531	-	BF0240	-	putative acetylglutamate kinase
241	 39.61	0	265269..265778	+	169	53711532	-	BF0241	-	RNA polymerase ECF-type sigma factor
242	 42.25	0	265762..266277	+	171	53711533	-	BF0242	-	hypothetical protein
243	 39.62	0	266282..266758	+	158	53711534	-	BF0243	-	hypothetical protein
244	 40.13	0	266946..267725	-	259	53711535	-	BF0244	-	hypothetical protein
245	 40.41	0	267745..268479	-	244	53711536	-	BF0245	-	hypothetical protein
246	 44.21	0	268600..269298	+	232	53711537	-	BF0246	-	putative zinc protease
247	 38.60	0	269460..269858	-	132	53711538	-	BF0247	-	hypothetical protein
248	 34.80	-1	269860..271020	+	386	53711539	-	BF0248	-	hypothetical protein
249	 36.84	-1	271181..271408	+	75	53711540	-	BF0249	-	hypothetical protein
250	 31.53	-2	271711..273096	+	461	53711541	-	BF0250	-	hypothetical protein
251	 29.59	-2	273083..273643	+	186	53711542	-	BF0251	-	hypothetical protein
252	 37.82	0	273848..274828	+	326	53711543	-	BF0252	-	FucR
253	 45.40	0	274901..276673	+	590	53711544	fucI	BF0253	-	L-fucose isomerase
254	 43.03	0	276692..277846	+	384	53711545	-	BF0254	-	L-1,2-propanediol oxidoreductase
255	 44.29	0	277843..278481	+	212	53711546	-	BF0255	-	L-fuculose-1-phosphate aldolase
256	 43.74	0	278499..279911	+	470	53711547	-	BF0256	-	L-fuculose kinase
257	 41.29	0	279923..281254	+	443	53711548	-	BF0257	-	L-fucose permease
258	 41.76	0	281268..282371	+	367	53711549	-	BF0258	-	hypothetical protein
259	 37.11	-1	282422..283693	+	423	53711550	-	BF0259	-	hypothetical protein
260	 40.80	0	283690..284907	+	405	53711551	-	BF0260	-	hypothetical protein
261	 41.24	0	285045..285512	+	155	53711552	-	BF0261	-	hypothetical protein
262	 41.33	0	285515..286777	+	420	53711553	nusA	BF0262	-	transcription elongation factor NusA
263	 43.70	0	286898..289945	+	1015	53711554	infB	BF0263	-	translation initiation factor IF-2
264	 44.82	0	290080..290523	+	147	53711555	-	BF0264	-	hypothetical protein
265	 43.14	0	290526..291983	+	485	53711556	-	BF0265	-	cysteine desulfurase activator complex subunit SufB
266	 42.84	0	291983..292729	+	248	53711557	-	BF0266	-	hypothetical protein
267	 44.49	0	292753..293505	+	250	53711558	-	BF0267	-	ABC transporter ATP-binding protein
268	 43.68	0	293514..294857	+	447	53711559	-	BF0268	-	putative ABC transporter permease protein
269	 44.39	0	294869..296080	+	403	53711560	-	BF0269	-	aminotransferase
270	 44.24	0	296379..296699	+	106	53711561	-	BF0270	-	hypothetical protein
271	 41.75	0	296774..298366	-	530	53711562	-	BF0271	-	alpha-galactosidase precursor
272	 44.01	0	298458..300302	-	614	53711563	-	BF0272	-	hypothetical protein
273	 41.87	0	300317..303715	-	1132	53711564	-	BF0273	-	hypothetical protein
274	 38.82	0	303881..305029	-	382	53711565	-	BF0274	-	putative anti-sigma factor
275	 38.31	0	305117..305659	-	180	53711566	-	BF0275	-	RNA polymerase ECF-type sigma factor
276	 40.39	0	306247..306501	+	84	53711567	-	BF0276	-	hypothetical protein
277	 37.04	-1	306533..306748	+	71	53711568	-	BF0277	-	hypothetical protein
278	 35.59	-1	306778..307929	-	383	53711569	-	BF0278	-	hypothetical protein
279	 35.83	-1	308054..308374	+	106	53711570	-	BF0279	-	hypothetical protein
280	 29.30	-2	308487..309155	-	222	53711571	-	BF0280	-	hypothetical protein
281	 26.75	-2	309152..309394	-	80	53711572	-	BF0281	-	hypothetical protein
282	 30.43	-2	309498..310877	-	459	53711573	-	BF0282	-	arylsulfatase regulator (Fe-S oxidoreductase)
283	 44.62	0	311412..311597	+	61	53711574	-	BF0283	-	hypothetical protein
284	 37.97	0	311760..312104	+	114	53711575	-	BF0284	-	hypothetical protein
285	 40.58	0	312485..312691	-	68	53711576	-	BF0285	-	hypothetical protein
286	 41.07	0	312688..313023	-	111	53711577	-	BF0286	-	hypothetical protein
287	 45.93	0	313170..315329	-	719	53711578	-	BF0287	-	alpha-galactosidase
288	 44.86	0	315573..316127	+	184	53711579	-	BF0288	-	hypothetical protein
289	 48.12	0	316251..318455	+	734	53711580	hppA	BF0289	-	membrane-bound proton-translocating pyrophosphatase
290	 47.69	0	318671..319276	+	201	53711581	rnhB	BF0290	-	ribonuclease HII
291	 44.98	0	319284..320210	-	308	53711582	-	BF0291	-	Mg2+/Co2+ transporter
292	 45.94	0	320496..322010	+	504	53711583	-	BF0292	-	phosphoglyceromutase
293	 43.38	0	322159..323253	+	364	53711584	-	BF0293	-	two-component system sensor histidine kinase
294	 44.80	0	323250..325193	+	647	53711585	-	BF0294	-	putative two-component system sensor histidine kinase
295	 46.39	0	325548..326129	+	193	53711586	-	BF0295	-	hypothetical protein
296	 45.84	0	326126..329092	+	988	53711587	-	BF0296	-	outer membrane assembly protein
297	 45.79	0	329193..331151	-	652	53711588	-	BF0297	-	DNA gyrase B subunit
298	 34.90	-1	331331..331585	-	84	53711589	rpsT	BF0298	-	30S ribosomal protein S20
299	 25.42	-2	331790..331966	+	58	53711590	-	BF0299	-	hypothetical protein
300	 40.88	0	331996..332724	+	242	53711591	-	BF0300	-	DNA repair protein
301	 42.44	0	332834..333283	-	149	53711592	-	BF0301	-	hypothetical protein
302	 48.13	0	333358..334668	-	436	53711593	-	BF0302	-	cell division protein FtsZ
303	 45.28	0	334695..336125	-	476	53711594	-	BF0303	-	cell division protein FtsA
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.