IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2293	 41.34	0	2668374..2669435	-	353	53713584	-	BF2295	-	hypothetical protein
2294	 40.44	0	2669594..2670142	+	182	53713585	-	BF2296	-	dTDP-4-dehydrorhamnose 3,5-epimerase
2295	 42.31	0	2670166..2671479	+	437	53713586	-	BF2297	-	UDP-glucose 6-dehydrogenase
2296	 37.94	0	2671621..2672424	+	267	53713587	-	BF2298	-	hypothetical protein
2297	 41.69	0	2672495..2673751	-	418	53713588	-	BF2299	-	ATP-dependent RNA helicase
2298	 44.04	0	2673831..2675054	-	407	53713589	-	BF2300	-	putative phosphoserine phosphatase
2299	 40.59	0	2675326..2675835	+	169	53713590	-	BF2301	-	hypothetical protein
2300	 38.89	0	2676001..2677098	-	365	53713591	-	BF2302	-	hypothetical protein
2301	 45.09	0	2677103..2678233	-	376	53713592	-	BF2303	-	tRNA-guanine transglycosylase
2302	 44.23	0	2678230..2680698	-	822	53713593	-	BF2304	-	ATP-dependent protease
2303	 44.54	0	2680883..2681596	+	237	53713594	-	BF2305	-	putative RNA methyltransferase
2304	 34.65	-1	2681843..2682373	-	176	53713595	-	BF2306	-	hypothetical protein
2305	 33.06	-1	2682534..2682899	-	121	53713596	-	BF2307	-	hypothetical protein
2306	 31.52	-2	2683087..2683251	-	54	53713597	-	BF2308	-	hypothetical protein
2307	 38.24	0	2683343..2683729	-	128	53713598	-	BF2309	-	hypothetical protein
2308	 34.71	-1	2683736..2684170	-	144	53713599	-	BF2310	-	hypothetical protein
2309	 35.98	-1	2684254..2684820	-	188	53713600	-	BF2311	-	hypothetical protein
2310	 35.49	-1	2684883..2685392	-	169	53713601	-	BF2312	-	hypothetical protein
2311	 44.78	0	2685951..2686151	+	66	53713602	-	BF2313	-	hypothetical protein
2312	 46.05	0	2686148..2686438	+	96	53713603	-	BF2314	-	hypothetical protein
2313	 47.49	0	2686679..2687137	+	152	53713604	-	BF2315	-	hypothetical protein
2314	 51.09	+1	2687134..2687499	+	121	53713605	-	BF2316	-	hypothetical protein
2315	 53.20	+1	2687781..2688077	-	98	53713606	-	BF2317	-	hypothetical protein
2316	 48.77	0	2688208..2688654	+	148	53713607	-	BF2318	-	hypothetical protein
2317	 44.88	0	2688668..2689663	+	331	53713608	-	BF2319	-	tyrosine type site-specific recombinase
2318	 38.46	0	2689823..2690017	-	64	53713609	-	BF2320	-	hypothetical protein
2319	 38.19	0	2690101..2690409	+	102	53713610	-	BF2321	-	hypothetical protein
2320	 35.96	-1	2690421..2690954	+	177	53713611	-	BF2322	-	hypothetical protein
2321	 33.33	-1	2690968..2691150	+	60	53713612	-	BF2323	-	hypothetical protein
2322	 33.33	-1	2691170..2691490	+	106	53713613	-	BF2324	-	hypothetical protein
2323	 33.33	-1	2691769..2692089	+	106	53713614	-	BF2325	-	hypothetical protein
2324	 33.33	-1	2692368..2692688	+	106	53713615	-	BF2326	-	hypothetical protein
2325	 36.67	-1	2692706..2692915	+	69	53713616	-	BF2327	-	hypothetical protein
2326	 46.73	0	2693019..2693906	+	295	53713617	-	BF2328	-	hypothetical protein
2327	 52.18	+1	2693764..2694612	+	282	53713618	-	BF2329	-	hypothetical protein
2328	 48.39	0	2694616..2694801	+	61	53713619	-	BF2330	-	hypothetical protein
2329	 52.44	+1	2694820..2695311	+	163	53713620	-	BF2331	-	hypothetical protein
2330	 48.38	0	2695442..2695873	+	143	53713621	-	BF2332	-	hypothetical protein
2331	 51.64	+1	2695737..2696774	+	345	53713622	-	BF2333	-	protease
2332	 52.10	+1	2696801..2699017	+	738	53713623	-	BF2334	-	hypothetical protein
2333	 54.70	+2	2699081..2699899	+	272	53713624	-	BF2335	-	hypothetical protein
2334	 53.95	+1	2700060..2700995	+	311	53713625	-	BF2336	-	hypothetical protein
2335	 52.63	+1	2701149..2701490	+	113	53713626	-	BF2337	-	hypothetical protein
2336	 55.01	+2	2701471..2702148	+	225	53713627	-	BF2338	-	hypothetical protein
2337	 57.53	+2	2702114..2703820	+	568	53713628	-	BF2339	-	hypothetical protein
2338	 50.28	+1	2704332..2704868	+	178	53713629	-	BF2340	-	hypothetical protein
2339	 55.19	+2	2704777..2705412	+	211	53713630	-	BF2341	-	hypothetical protein
2340	 48.11	0	2705388..2705678	+	96	53713631	-	BF2342	-	hypothetical protein
2341	 54.32	+1	2705682..2707034	+	450	53713632	-	BF2343	-	hypothetical protein
2342	 55.94	+2	2707044..2707985	+	313	53713633	-	BF2344	-	hypothetical protein
2343	 51.69	+1	2707988..2708788	+	266	53713634	-	BF2345	-	hypothetical protein
2344	 37.50	-1	2708936..2709103	-	55	53713635	-	BF2345.1	-	hypothetical protein
2345	 50.00	+1	2709179..2710852	-	557	53713636	-	BF2345.2	-	IS66 family transposase
2346	 43.72	0	2710928..2711293	-	121	53713637	-	BF2345.3	-	hypothetical protein
2347	 48.46	0	2711297..2711653	-	118	53713638	-	BF2345.4	-	hypothetical protein
2348	 53.90	+1	2711705..2712127	+	140	53713639	-	BF2347	-	hypothetical protein
2349	 51.80	+1	2712140..2712583	+	147	53713640	-	BF2348	-	hypothetical protein
2350	 53.33	+1	2712580..2713044	+	154	53713641	-	BF2349	-	hypothetical protein
2351	 54.64	+2	2712965..2717164	+	1399	53713642	-	BF2350	-	hypothetical protein
2352	 55.59	+2	2717175..2719277	+	700	53713643	-	BF2351	-	hypothetical protein
2353	 48.65	0	2719322..2719543	+	73	53713644	-	BF2352	-	hypothetical protein
2354	 52.01	+1	2719540..2720733	+	397	53713645	-	BF2353	-	hypothetical protein
2355	 46.96	0	2720831..2721454	+	207	53713646	-	BF2354	-	hypothetical protein
2356	 50.88	+1	2721510..2722136	-	208	53713647	-	BF2355	-	hypothetical protein
2357	 40.69	0	2722294..2722728	+	144	53713648	-	BF2356	-	hypothetical protein
2358	 38.64	0	2723342..2723680	+	112	53713649	-	BF2357	-	hypothetical protein
2359	 35.90	-1	2724849..2726093	-	414	53713650	-	BF2359	-	tyrosine type site-specific recombinase
2360	 40.18	0	2726653..2726871	-	72	53713651	-	BF2360	-	hypothetical protein
2361	 35.26	-1	2726980..2727135	-	51	53713652	-	BF2361	-	hypothetical protein
2362	 38.89	0	2727217..2727558	+	113	53713653	-	BF2362	-	hypothetical protein
2363	 43.10	0	2727627..2727800	+	57	53713654	-	BF2363	-	hypothetical protein
2364	 49.53	+1	2727807..2729084	-	425	53713655	-	BF2364	-	two-component system sensor histidine kinase
2365	 48.94	+1	2729081..2730445	-	454	53713656	-	BF2365	-	two-component system response regulator
2366	 36.59	-1	2730421..2730666	-	81	53713657	-	BF2366	-	hypothetical protein
2367	 50.71	+1	2730808..2732280	+	490	53713658	-	BF2367	-	putative outer membrane protein TolC
2368	 47.72	0	2732319..2733569	+	416	53713659	-	BF2368	-	ABC transporter permease
2369	 43.48	0	2733713..2736136	+	807	53713660	-	BF2369	-	ABC transporter permease
2370	 44.12	0	2736286..2738631	+	781	53713661	-	BF2370	-	putative ABC transporter permease
2371	 42.87	0	2738648..2740975	+	775	53713662	-	BF2371	-	putative ABC transporter permease
2372	 41.03	0	2740990..2743392	+	800	53713663	-	BF2372	-	putative ABC transporter permease protein
2373	 39.75	0	2743586..2745814	+	742	53713664	-	BF2373	-	putative ABC-transporter permease protein
2374	 40.46	0	2745834..2748161	+	775	53713665	-	BF2374	-	putative ABC-transporter permease protein
2375	 41.33	0	2748190..2748864	+	224	53713666	-	BF2375	-	putative ABC transporter ATP-binding protein
2376	 32.22	-1	2749070..2749339	+	89	53713667	-	BF2376	-	hypothetical protein
2377	 41.43	0	2749587..2750771	-	394	53713668	-	BF2377	-	8-amino-7-oxononanoate synthase
2378	 38.60	0	2751006..2752049	+	347	53713669	-	BF2378	-	hypothetical protein
2379	 45.85	0	2752131..2753888	+	585	53713670	aspS	BF2379	-	aspartyl-tRNA synthetase
2380	 37.24	-1	2753889..2754272	+	127	53713671	-	BF2380	-	hypothetical protein
2381	 44.18	0	2754352..2755236	-	294	53713672	-	BF2381	-	beta-ureidopropionase
2382	 42.56	0	2755248..2756363	-	371	53713673	-	BF2382	-	hypothetical protein
2383	 46.02	0	2756445..2756972	-	175	53713674	-	BF2383	-	hypothetical protein
2384	 43.64	0	2757067..2757687	+	206	53713675	-	BF2384	-	ABC transporter ATP-binding protein
2385	 41.55	0	2757817..2758485	+	222	53713676	-	BF2385	-	ABC transporter permease protein
2386	 36.26	-1	2758493..2758765	+	90	53713677	-	BF2386	-	hypothetical protein
2387	 37.76	0	2758857..2759240	+	127	53713678	-	BF2387	-	hypothetical protein
2388	 41.30	0	2759233..2759646	-	137	53713679	-	BF2388	-	hypothetical protein
2389	 42.10	0	2759753..2760847	+	364	53713680	-	BF2389	-	hypothetical protein
2390	 40.97	0	2760853..2761677	+	274	53713681	-	BF2390	-	hypothetical protein
2391	 47.05	0	2761914..2763320	+	468	53713682	-	BF2391	-	outer membrane efflux protein oprM precursor
2392	 46.14	0	2763339..2764478	+	379	53713683	-	BF2392	-	putative cation efflux pump
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.