IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2178	 43.71	0	2543126..2545660	+	844	53713469	-	BF2180	-	putative helicase
2179	 38.10	0	2545818..2546174	-	118	53713470	-	BF2181	-	thioredoxin
2180	 43.47	0	2546403..2547665	+	420	53713471	-	BF2182	-	cation efflux system protein CzcC
2181	 44.87	0	2547679..2548770	+	363	53713472	-	BF2183	-	cation efflux system protein CzcB
2182	 46.07	0	2548786..2551911	+	1041	53713473	-	BF2184	-	cation efflux system protein CzcA
2183	 46.67	0	2551946..2552620	+	224	53713474	-	BF2185	-	two-component system response regulator
2184	 46.79	0	2552638..2553975	+	445	53713475	-	BF2186	-	two-component system sensor histidine kinase
2185	 29.41	-2	2554020..2554172	+	50	53713476	-	BF2187	-	hypothetical protein
2186	 42.67	0	2554159..2554833	+	224	53713477	-	BF2188	-	hypothetical protein
2187	 44.07	0	2554830..2555006	+	58	53713478	-	BF2189	-	hypothetical protein
2188	 49.26	+1	2555023..2556774	-	583	53713479	-	BF2190	-	putative acetylhydrolase
2189	 47.46	0	2556963..2557670	-	235	53713480	-	BF2191	-	putative precorrin-2 C20-methyltransferase
2190	 46.48	0	2557784..2558932	+	382	53713481	-	BF2192	-	iron(III) ABC transporter periplasmic iron-binding protein
2191	 50.67	+1	2558941..2559978	+	345	53713482	-	BF2193	-	iron(III) ABC transporter putative permease protein
2192	 48.98	+1	2559985..2561013	+	342	53713483	-	BF2194	-	iron(III) ABC transporter ATP-binding protein
2193	 46.13	0	2561147..2562037	-	296	53713484	-	BF2195	-	dTDP-4-dehydrorhamnose reductase
2194	 46.63	0	2562050..2562583	-	177	53713485	-	BF2196	-	hypothetical protein
2195	 45.71	0	2562647..2563438	-	263	53713486	-	BF2197	-	hypothetical protein
2196	 44.68	0	2563448..2564143	-	231	53713487	-	BF2198	-	two-component system response regulator
2197	 44.70	0	2564140..2565582	-	480	53713488	-	BF2199	-	two-component system sensor histidine kinase
2198	 42.78	0	2565876..2567993	+	705	53713489	-	BF2200	-	hypothetical protein
2199	 37.76	0	2568020..2570029	-	669	53713490	-	BF2201	-	two-component system sensor histidine kinase
2200	 41.61	0	2570198..2571865	+	555	53713491	-	BF2202	-	formate--tetrahydrofolate ligase
2201	 39.24	0	2572159..2572869	-	236	53713492	-	BF2203	-	hypothetical protein
2202	 43.09	0	2573053..2574333	-	426	53713493	glyA	BF2204	-	serine hydroxymethyltransferase
2203	 38.13	0	2574441..2575169	-	242	53713494	-	BF2205	-	hypothetical protein
2204	 41.58	0	2575166..2575735	-	189	53713495	-	BF2206	-	flavoredoxin
2205	 36.36	-1	2575821..2576282	-	153	53713496	-	BF2207	-	aspartate carbamoyltransferase regulatory subunit
2206	 41.42	0	2576287..2577213	-	308	53713497	pyrB	BF2208	-	aspartate carbamoyltransferase catalytic subunit
2207	 38.35	0	2577645..2577923	+	92	53713498	-	BF2209	-	hypothetical protein
2208	 39.94	0	2577920..2578540	+	206	53713499	-	BF2210	-	putative surface protein
2209	 39.25	0	2578541..2579470	-	309	53713500	-	BF2211	-	hypothetical protein
2210	 42.68	0	2579482..2580861	-	459	53713501	-	BF2212	-	putative outer membrane protein
2211	 32.03	-1	2580869..2581021	-	50	53713502	-	BF2213	-	hypothetical protein
2212	 35.10	-1	2581096..2582058	+	320	53713503	-	BF2214	-	hypothetical protein
2213	 42.73	0	2582238..2584409	+	723	53713504	-	BF2215	-	hypothetical protein
2214	 43.11	0	2584413..2585363	-	316	53713505	-	BF2216	-	hypothetical protein
2215	 31.52	-2	2585392..2585556	-	54	53713506	-	BF2217	-	hypothetical protein
2216	 44.84	0	2585584..2587668	-	694	53713507	-	BF2218	-	putative outer membrane protein involved in nutrient binding
2217	 45.32	0	2587685..2590954	-	1089	53713508	-	BF2219	-	putative outer membrane protein involved in nutrient binding
2218	 44.99	0	2591291..2591779	+	162	53713509	-	BF2220	-	hypothetical protein
2219	 39.95	0	2591867..2593195	-	442	53713510	-	BF2221	-	hypothetical protein
2220	 39.40	0	2593110..2594411	-	433	53713511	-	BF2222	-	hypothetical protein
2221	 38.51	0	2594408..2595238	-	276	53713512	-	BF2223	-	3-deoxy-manno-octulosonate cytidylyltransferase
2222	 38.46	0	2595362..2595517	+	51	53713513	-	BF2224	-	hypothetical protein
2223	 35.12	-1	2595913..2596080	+	55	53713514	-	BF2225	-	hypothetical protein
2224	 43.80	0	2596096..2596563	+	155	53713515	-	BF2226	-	hypothetical protein
2225	 44.22	0	2596774..2599107	+	777	53713516	-	BF2227	-	penicillin-binding protein 1A
2226	 46.61	0	2599121..2599489	+	122	53713517	-	BF2228	-	putative 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase
2227	 43.28	0	2599552..2600838	+	428	53713518	-	BF2229	-	putative zinc protease
2228	 41.86	0	2600889..2602049	+	386	53713519	-	BF2230	-	putative phosphatidylinositol-4-phosphate 5-kinase
2229	 44.88	0	2602130..2603047	-	305	53713520	-	BF2231	-	ribose-phosphate pyrophosphokinase
2230	 41.00	0	2603199..2607674	+	1491	53713521	-	BF2232	-	putative two-component system sensor histidine kinase
2231	 41.56	0	2607703..2608431	+	242	53713522	-	BF2233	-	two-component system response regulator
2232	 42.27	0	2608421..2609875	+	484	53713523	-	BF2234	-	putative efflux pump component protein
2233	 39.55	0	2610408..2610584	-	58	53713524	-	BF2235	-	hypothetical protein
2234	 35.06	-1	2610645..2610818	+	57	53713525	-	BF2236	-	hypothetical protein
2235	 28.85	-2	2610802..2610957	+	51	53713526	-	BF2237	-	hypothetical protein
2236	 34.69	-1	2611141..2611878	+	245	53713527	-	BF2238	-	hypothetical protein
2237	 36.38	-1	2611996..2612979	+	327	53713528	-	BF2239	-	para-aminobenzoate synthase component I
2238	 36.01	-1	2612963..2613559	+	198	53713529	-	BF2240	-	hypothetical protein
2239	 32.80	-1	2613665..2613850	+	61	53713530	-	BF2241	-	hypothetical protein
2240	 37.22	-1	2613847..2614515	+	222	53713531	-	BF2242	-	hypothetical protein
2241	 39.69	0	2614584..2616596	+	670	53713532	-	BF2243	-	1,4-alpha-glucan branching enzyme
2242	 37.69	0	2616672..2618369	-	565	53713533	-	BF2244	-	alpha-amylase
2243	 38.53	0	2618380..2619438	-	352	53713534	-	BF2245	-	oxidoreductase
2244	 39.28	0	2619429..2620235	-	268	53713535	-	BF2246	-	hypothetical protein
2245	 27.38	-2	2620219..2620386	-	55	53713536	-	BF2247	-	hypothetical protein
2246	 40.66	0	2620405..2621619	-	404	53713537	-	BF2248	-	putative membrane efflux protein
2247	 42.76	0	2621838..2623343	+	501	53713538	-	BF2249	-	glutamine synthetase I
2248	 37.29	-1	2623429..2624010	+	193	53713539	-	BF2250	-	putative regulatory protein
2249	 39.78	0	2624082..2624795	+	237	53713540	-	BF2251	-	putative oxidoreductase
2250	 43.32	0	2624940..2625530	+	196	53713541	-	BF2252	-	hypothetical protein
2251	 41.90	0	2625611..2625820	-	69	53713542	-	BF2253	-	hypothetical protein
2252	 34.39	-1	2625940..2626224	-	94	53713543	-	BF2254	-	hypothetical protein
2253	 37.13	-1	2626484..2626720	-	78	53713544	-	BF2255	-	hypothetical protein
2254	 47.70	0	2626929..2627798	-	289	53713545	-	BF2256	-	succinyl-CoA synthetase alpha chain
2255	 43.17	0	2627795..2628943	-	382	53713546	-	BF2257	-	succinyl-CoA synthetase beta chain
2256	 46.40	0	2629149..2630036	-	295	53713547	-	BF2258	-	malonyl CoA-acyl carrier protein transacylase
2257	 46.64	0	2630140..2630973	-	277	53713548	-	BF2259	-	phosphomethylpyrimidine kinase
2258	 44.54	0	2631315..2632046	+	243	53713549	-	BF2260	-	hypothetical protein
2259	 51.00	+1	2632098..2633603	+	501	53713550	-	BF2261	-	xylulose kinase
2260	 48.48	0	2633693..2635012	+	439	53713551	-	BF2262	-	xylose isomerase
2261	 48.65	0	2635078..2636526	+	482	53713552	xylE	BF2263	-	D-xylose transporter XylE
2262	 48.14	0	2637081..2638289	-	402	53713553	-	BF2264	-	phosphodiesterase I
2263	 45.94	0	2638395..2639933	+	512	53713554	-	BF2265	-	putative carbon-nitrogen hydrolase
2264	 46.45	0	2640052..2640684	+	210	53713555	-	BF2266	-	thioredoxin peroxidase
2265	 41.87	0	2640895..2641140	+	81	53713556	-	BF2267	-	RNA binding protein
2266	 46.98	0	2641212..2642603	-	463	53713557	-	BF2268	-	cytochrome c peroxidase
2267	 44.15	0	2642619..2643404	-	261	53713558	-	BF2269	-	cytochrome c biogenesis protein
2268	 39.64	0	2643388..2644275	-	295	53713559	-	BF2270	-	hypothetical protein
2269	 31.07	-2	2644535..2645152	+	205	53713560	-	BF2271	-	hypothetical protein
2270	 36.42	-1	2645153..2645800	+	215	53713561	-	BF2272	-	hypothetical protein
2271	 32.77	-1	2645793..2645969	+	58	53713562	-	BF2273	-	hypothetical protein
2272	 42.76	0	2645935..2646984	-	349	53713563	-	BF2274	-	hypothetical protein
2273	 41.19	0	2647209..2650634	+	1141	53713564	ileS	BF2275	-	isoleucyl-tRNA synthetase
2274	 43.57	0	2650669..2651049	+	126	53713565	-	BF2276	-	putative DnaK suppressor protein
2275	 35.70	-1	2651167..2651799	+	210	53713566	-	BF2277	-	putative signal peptidase
2276	 37.54	-1	2651810..2652856	+	348	53713567	-	BF2278	-	hypothetical protein
2277	 34.24	-1	2652865..2653194	+	109	53713568	-	BF2279	-	hypothetical protein
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.