IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2116	 36.11	-1	2465568..2465891	-	107	53713407	-	BF2118	-	hypothetical protein
2117	 37.10	-1	2465911..2466759	-	282	53713408	-	BF2119	-	transcription regulator
2118	 37.63	0	2466960..2467355	+	131	53713409	-	BF2120	-	hypothetical protein
2119	 43.14	0	2467352..2468656	+	434	53713410	-	BF2121	-	hypothetical protein
2120	 44.14	0	2468653..2469198	+	181	53713411	-	BF2122	-	putative transcriptional regulator
2121	 38.18	0	2469228..2469392	+	54	53713412	-	BF2123	-	hypothetical protein
2122	 46.38	0	2469535..2470101	+	188	53713413	-	BF2124	-	hypothetical protein
2123	 47.23	0	2470119..2471579	+	486	53713414	-	BF2125	-	hypothetical protein
2124	 46.86	0	2471621..2473180	+	519	53713415	-	BF2126	-	hypothetical protein
2125	 43.83	0	2473212..2474192	+	326	53713416	-	BF2127	-	hypothetical protein
2126	 40.10	0	2474307..2475266	-	319	53713417	-	BF2128	-	hypothetical protein
2127	 37.43	-1	2475306..2475476	-	56	53713418	-	BF2129	-	hypothetical protein
2128	 39.90	0	2475516..2476475	-	319	53713419	-	BF2130	-	hypothetical protein
2129	 37.11	-1	2476727..2477044	+	105	53713420	-	BF2131	-	hypothetical protein
2130	 42.07	0	2477185..2478123	+	312	53713421	-	BF2132	-	putative UDP-glucose 4-epimerase
2131	 39.63	0	2478158..2479285	+	375	53713422	-	BF2133	-	two-component system sensor histidine kinase
2132	 41.65	0	2479518..2482391	-	957	53713423	-	BF2134	-	hypothetical protein
2133	 42.38	0	2482388..2485561	-	1057	53713424	-	BF2135	-	ATP-dependent helicase
2134	 42.97	0	2485585..2487162	-	525	53713425	-	BF2136	-	beta-hexosaminidase precursor
2135	 41.82	0	2487419..2490058	+	879	53713426	-	BF2137	-	hypothetical protein
2136	 39.50	0	2490187..2493492	+	1101	53713427	-	BF2138	-	hypothetical protein
2137	 41.52	0	2493515..2494846	+	443	53713428	-	BF2139	-	hypothetical protein
2138	 35.96	-1	2495348..2496718	-	456	53713429	-	BF2140	-	hypothetical protein
2139	 37.90	0	2496693..2498267	-	524	53713430	-	BF2141	-	putative ATPase
2140	 40.74	0	2498455..2499237	+	260	53713431	-	BF2142	-	hypothetical protein
2141	 44.79	0	2499215..2499598	+	127	53713432	-	BF2143	-	hypothetical protein
2142	 40.90	0	2499604..2501268	-	554	53713433	-	BF2144	-	putative long-chain-fatty-acid-CoA ligase
2143	 40.56	0	2501482..2502948	-	488	53713434	-	BF2145	-	potassium/proton antiporter
2144	 44.36	0	2503120..2504307	+	395	53713435	-	BF2146	-	putative uracil permease
2145	 43.91	0	2504434..2506059	-	541	161936264	-	BF2147	-	hydroxylamine reductase
2146	 44.44	0	2506581..2507246	-	221	53713437	-	BF2148	-	transcriptional regulator
2147	 41.86	0	2507362..2508675	-	437	53713438	-	BF2149	-	putative two-component system sensor histidine kinase
2148	 43.69	0	2508672..2510003	-	443	53713439	-	BF2150	-	two-component system response regulator
2149	 43.10	0	2510141..2510857	-	238	53713440	-	BF2151	-	hypothetical protein
2150	 40.00	0	2510826..2511635	-	269	53713441	-	BF2152	-	calcineurin superfamily phosphohydrolase
2151	 40.50	0	2511890..2514178	+	762	53713442	-	BF2153	-	ABC transporter permease protein
2152	 41.41	0	2514198..2514878	+	226	53713443	-	BF2154	-	ABC transporter ATP-binding protein
2153	 38.88	0	2514895..2517201	+	768	53713444	-	BF2155	-	ABC transporter permease protein
2154	 42.58	0	2517211..2517891	+	226	53713445	-	BF2156	-	ABC transporter ATP-binding protein
2155	 39.92	0	2517908..2520214	+	768	53713446	-	BF2157	-	ABC transporter permease protein
2156	 39.26	0	2520245..2522539	+	764	53713447	-	BF2158	-	ABC transporter permease protein
2157	 45.35	0	2522623..2523987	-	454	53713448	-	BF2159	-	putative Na+-driven multidrug efflux pump
2158	 40.42	0	2524095..2524757	+	220	53713449	-	BF2160	-	putative phosphatase
2159	 45.28	0	2524829..2525824	+	331	53713450	-	BF2161	-	dihydroorotate dehydrogenase 2
2160	 45.11	0	2525821..2526567	+	248	53713451	-	BF2162	-	putative beta-xylanase
2161	 44.77	0	2526659..2527480	+	273	53713452	panB	BF2163	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2162	 45.50	0	2527488..2528654	+	388	53713453	-	BF2164	-	putative sugar transporter
2163	 41.60	0	2528741..2529127	-	128	53713454	-	BF2165	-	diacylglycerol kinase
2164	 43.86	0	2529130..2531343	-	737	53713455	-	BF2166	-	GTP pyrophosphokinase
2165	 42.89	0	2531451..2532968	+	505	53713456	-	BF2167	-	hypothetical protein
2166	 39.43	0	2533037..2533282	-	81	53713457	-	BF2168	-	putative RNA-binding protein
2167	 28.99	-2	2533345..2533551	+	68	53713458	-	BF2169	-	hypothetical protein
2168	 45.93	0	2533930..2535096	+	388	53713459	purT	BF2170	-	phosphoribosylglycinamide formyltransferase 2
2169	 45.72	0	2535739..2537256	+	505	53713460	-	BF2171	-	F0F1 ATP synthase subunit beta
2170	 47.15	0	2537268..2537513	+	81	53713461	-	BF2172	-	ATP synthase epsilon chain
2171	 38.00	0	2537547..2537975	+	142	53713462	-	BF2173	-	hypothetical protein
2172	 42.71	0	2537959..2539110	+	383	53713463	-	BF2174	-	ATP synthase A subunit
2173	 45.74	0	2539137..2539394	+	85	53713464	-	BF2175	-	ATP synthase C subunit
2174	 44.58	0	2539410..2539907	+	165	53713465	-	BF2176	-	ATP synthase B subunit
2175	 43.14	0	2539917..2540477	+	186	53713466	-	BF2177	-	F0F1 ATP synthase subunit delta
2176	 46.97	0	2540491..2542074	+	527	53713467	-	BF2178	-	F0F1 ATP synthase subunit alpha
2177	 43.30	0	2542096..2542968	+	290	53713468	-	BF2179	-	F0F1 ATP synthase subunit gamma
2178	 43.71	0	2543126..2545660	+	844	53713469	-	BF2180	-	putative helicase
2179	 38.10	0	2545818..2546174	-	118	53713470	-	BF2181	-	thioredoxin
2180	 43.47	0	2546403..2547665	+	420	53713471	-	BF2182	-	cation efflux system protein CzcC
2181	 44.87	0	2547679..2548770	+	363	53713472	-	BF2183	-	cation efflux system protein CzcB
2182	 46.07	0	2548786..2551911	+	1041	53713473	-	BF2184	-	cation efflux system protein CzcA
2183	 46.67	0	2551946..2552620	+	224	53713474	-	BF2185	-	two-component system response regulator
2184	 46.79	0	2552638..2553975	+	445	53713475	-	BF2186	-	two-component system sensor histidine kinase
2185	 29.41	-2	2554020..2554172	+	50	53713476	-	BF2187	-	hypothetical protein
2186	 42.67	0	2554159..2554833	+	224	53713477	-	BF2188	-	hypothetical protein
2187	 44.07	0	2554830..2555006	+	58	53713478	-	BF2189	-	hypothetical protein
2188	 49.26	+1	2555023..2556774	-	583	53713479	-	BF2190	-	putative acetylhydrolase
2189	 47.46	0	2556963..2557670	-	235	53713480	-	BF2191	-	putative precorrin-2 C20-methyltransferase
2190	 46.48	0	2557784..2558932	+	382	53713481	-	BF2192	-	iron(III) ABC transporter periplasmic iron-binding protein
2191	 50.67	+1	2558941..2559978	+	345	53713482	-	BF2193	-	iron(III) ABC transporter putative permease protein
2192	 48.98	+1	2559985..2561013	+	342	53713483	-	BF2194	-	iron(III) ABC transporter ATP-binding protein
2193	 46.13	0	2561147..2562037	-	296	53713484	-	BF2195	-	dTDP-4-dehydrorhamnose reductase
2194	 46.63	0	2562050..2562583	-	177	53713485	-	BF2196	-	hypothetical protein
2195	 45.71	0	2562647..2563438	-	263	53713486	-	BF2197	-	hypothetical protein
2196	 44.68	0	2563448..2564143	-	231	53713487	-	BF2198	-	two-component system response regulator
2197	 44.70	0	2564140..2565582	-	480	53713488	-	BF2199	-	two-component system sensor histidine kinase
2198	 42.78	0	2565876..2567993	+	705	53713489	-	BF2200	-	hypothetical protein
2199	 37.76	0	2568020..2570029	-	669	53713490	-	BF2201	-	two-component system sensor histidine kinase
2200	 41.61	0	2570198..2571865	+	555	53713491	-	BF2202	-	formate--tetrahydrofolate ligase
2201	 39.24	0	2572159..2572869	-	236	53713492	-	BF2203	-	hypothetical protein
2202	 43.09	0	2573053..2574333	-	426	53713493	glyA	BF2204	-	serine hydroxymethyltransferase
2203	 38.13	0	2574441..2575169	-	242	53713494	-	BF2205	-	hypothetical protein
2204	 41.58	0	2575166..2575735	-	189	53713495	-	BF2206	-	flavoredoxin
2205	 36.36	-1	2575821..2576282	-	153	53713496	-	BF2207	-	aspartate carbamoyltransferase regulatory subunit
2206	 41.42	0	2576287..2577213	-	308	53713497	pyrB	BF2208	-	aspartate carbamoyltransferase catalytic subunit
2207	 38.35	0	2577645..2577923	+	92	53713498	-	BF2209	-	hypothetical protein
2208	 39.94	0	2577920..2578540	+	206	53713499	-	BF2210	-	putative surface protein
2209	 39.25	0	2578541..2579470	-	309	53713500	-	BF2211	-	hypothetical protein
2210	 42.68	0	2579482..2580861	-	459	53713501	-	BF2212	-	putative outer membrane protein
2211	 32.03	-1	2580869..2581021	-	50	53713502	-	BF2213	-	hypothetical protein
2212	 35.10	-1	2581096..2582058	+	320	53713503	-	BF2214	-	hypothetical protein
2213	 42.73	0	2582238..2584409	+	723	53713504	-	BF2215	-	hypothetical protein
2214	 43.11	0	2584413..2585363	-	316	53713505	-	BF2216	-	hypothetical protein
2215	 31.52	-2	2585392..2585556	-	54	53713506	-	BF2217	-	hypothetical protein
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.