IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1952	 40.09	0	2294357..2294785	-	142	53713243	-	BF1953	-	hypothetical protein
1953	 48.39	0	2294801..2297284	-	827	53713244	-	BF1954	-	endopeptidase Clp ATP-binding chain B
1954	 44.78	0	2297297..2298676	-	459	53713245	-	BF1955	-	hypothetical protein
1955	 42.00	0	2298692..2299141	-	149	53713246	-	BF1956	-	hypothetical protein
1956	 44.10	0	2299231..2299620	-	129	53713247	-	BF1957	-	hypothetical protein
1957	 34.14	-1	2300061..2300804	-	247	53713248	-	BF1958	-	putative transcriptional regulator
1958	 23.73	-2	2300964..2301140	+	58	53713249	-	BF1959	-	hypothetical protein
1959	 40.41	0	2301149..2302420	+	423	53713250	-	BF1960	-	8-amino-7-oxononanoate synthase
1960	 40.40	0	2302645..2305716	-	1023	53713251	-	BF1961	-	hypothetical protein
1961	 37.10	-1	2305745..2305930	-	61	53713252	-	BF1962	-	probabale oxalocrotonate tautomerase
1962	 36.36	-1	2306101..2306265	+	54	53713253	-	BF1963	-	hypothetical protein
1963	 32.67	-1	2306262..2306561	+	99	53713254	-	BF1964	-	hypothetical protein
1964	 42.51	0	2307094..2307714	+	206	53713255	-	BF1965	-	transcriptional regulator
1965	 42.41	0	2307873..2308853	+	326	53713256	-	BF1966	-	tyrosine type site-specific recombinase
1966	 29.93	-2	2309087..2309674	+	195	53713257	-	BF1967	-	hypothetical protein
1967	 27.70	-2	2309773..2310216	+	147	53713258	-	BF1968	-	hypothetical protein
1968	 31.50	-2	2310283..2310774	+	163	53713259	-	BF1969	-	hypothetical protein
1969	 34.35	-1	2310834..2311226	+	130	53713260	-	BF1970	-	hypothetical protein
1970	 32.08	-1	2311321..2312199	+	292	53713261	-	BF1971	-	hypothetical protein
1971	 31.71	-2	2312218..2312649	+	143	53713262	-	BF1972	-	hypothetical protein
1972	 40.18	0	2312873..2313325	+	150	53713263	-	BF1973	-	hypothetical protein
1973	 46.39	0	2313416..2314204	+	262	53713264	-	BF1974	-	hypothetical protein
1974	 32.52	-1	2314266..2314511	+	81	53713265	-	BF1975	-	hypothetical protein
1975	 38.54	0	2314508..2314699	+	63	53713266	-	BF1976	-	hypothetical protein
1976	 38.63	0	2315133..2316170	-	345	53713267	-	BF1977	-	hypothetical protein
1977	 42.46	0	2316252..2316503	-	83	53713268	-	BF1978	-	hypothetical protein
1978	 31.29	-2	2316580..2319417	-	945	53713269	-	BF1979	-	putative ATPase involved in DNA repair
1979	 40.15	0	2319418..2324319	-	1633	53713270	-	BF1980	-	helicase domain-containing protein
1980	 35.27	-1	2324324..2324530	-	68	53713271	-	BF1981	-	hypothetical protein
1981	 45.54	0	2324850..2325365	-	171	53713272	-	BF1982	-	hypothetical protein
1982	 44.56	0	2325751..2326035	+	94	53713273	-	BF1983	-	hypothetical protein
1983	 45.58	0	2326032..2326325	+	97	53713274	-	BF1984	-	hypothetical protein
1984	 41.94	0	2326359..2326718	+	119	53713275	-	BF1985	-	hypothetical protein
1985	 41.03	0	2326701..2327012	-	103	53713276	-	BF1986	-	hypothetical protein
1986	 44.57	0	2327018..2328325	-	435	53713277	-	BF1987	-	tyrosine type site-specific recombinase
1987	 46.42	0	2328331..2329560	-	409	53713278	-	BF1988	-	tyrosine type site-specific recombinase
1988	 43.27	0	2329642..2329812	-	56	53713279	-	BF1989	-	hypothetical protein
1989	 46.65	0	2330233..2331921	+	562	53713280	-	BF1990	-	putative ABC transporter ATP-binding protein
1990	 44.37	0	2332117..2334906	+	929	53713281	-	BF1991	-	putative TonB-dependent outer membrane protein
1991	 42.56	0	2334930..2336825	+	631	53713282	-	BF1992	-	hypothetical protein
1992	 48.25	0	2336940..2338025	-	361	53713283	-	BF1993	-	hypothetical protein
1993	 50.59	+1	2338166..2340865	-	899	53713284	-	BF1994	-	two-component system sensor histidine kinase
1994	 53.76	+1	2340878..2342086	-	402	53713285	-	BF1995	-	putative glycosyltransferase
1995	 43.14	0	2342095..2343552	-	485	53713286	-	BF1996	-	hypothetical protein
1996	 44.56	0	2343614..2344468	-	284	53713287	-	BF1997	-	glycosyltransferase involved in cell wall biogenesis
1997	 42.92	0	2344452..2345609	-	385	53713288	-	BF1998	-	putative glycosyltransferase
1998	 47.70	0	2345615..2346526	-	303	53713289	-	BF1999	-	glycosyltransferase
1999	 45.49	0	2346548..2347666	-	372	53713290	-	BF2000	-	hypothetical protein
2000	 45.91	0	2347695..2349173	-	492	53713291	-	BF2001	-	putative flippase
2001	 41.39	0	2349166..2350344	-	392	53713292	-	BF2002	-	putative glycosyltransferase
2002	 53.40	+1	2350937..2352157	-	406	53713293	-	BF2003	-	putative glycosyltransferase
2003	 52.30	+1	2352382..2353272	-	296	53713294	-	BF2005	-	putative glycosyltransferase
2004	 43.46	0	2353311..2354663	-	450	53713295	-	BF2006	-	hypothetical protein
2005	 39.07	0	2354650..2356863	-	737	53713296	-	BF2007	-	hypothetical protein
2006	 39.33	0	2356878..2357627	-	249	53713297	-	BF2008	-	hypothetical protein
2007	 52.31	+1	2357762..2359015	-	417	53713298	-	BF2009	-	hypothetical protein
2008	 50.14	+1	2359179..2360576	+	465	53713299	-	BF2010	-	putative aminopeptidase C
2009	 50.85	+1	2361141..2362493	+	450	53713300	-	BF2011	-	Na(+)-translocating NADH-quinone reductase subunit A
2010	 50.38	+1	2362525..2363703	+	392	53713301	-	BF2012	-	Na(+)-translocating NADH-quinone reductase subunit B
2011	 43.36	0	2363718..2364395	+	225	53713302	-	BF2013	-	Na(+)-translocating NADH-quinone reductase subunit C
2012	 47.55	0	2364412..2365044	+	210	53713303	-	BF2014	-	Na(+)-translocating NADH-quinone reductase subunit D
2013	 48.64	0	2365073..2365699	+	208	53713304	-	BF2015	-	Na(+)-translocating NADH-quinone reductase subunit E
2014	 50.63	+1	2365722..2366993	+	423	53713305	-	BF2016	-	Na(+)-translocating NADH-quinone reductase subunit F
2015	 50.08	+1	2367090..2368409	+	439	53713306	-	BF2017	-	ATP-independent RNA helicase
2016	 48.31	0	2368923..2369990	+	355	53713307	-	BF2018	-	phosphoserine aminotransferase
2017	 46.91	0	2370104..2371024	+	306	53713308	-	BF2019	-	D-3-phosphoglycerate dehydrogenase
2018	 48.64	0	2371037..2372284	+	415	53713309	-	BF2020	-	hypothetical protein
2019	 47.01	0	2372532..2372933	+	133	53713310	-	BF2021	-	peptidyl-prolyl cis-trans isomerase
2020	 50.16	+1	2372960..2373577	+	205	53713311	-	BF2022	-	hypothetical protein
2021	 49.49	+1	2373655..2374743	+	362	53713312	-	BF2023	-	type II restriction enzyme HpaII
2022	 49.12	+1	2374768..2375337	+	189	53713313	-	BF2024	-	putative NAD(P)H nitroreductase
2023	 50.84	+1	2375480..2378329	-	949	53713314	-	BF2025	-	glycine dehydrogenase
2024	 49.30	+1	2378372..2379010	-	212	53713315	-	BF2026	-	putative metallo-beta-lactamase
2025	 48.74	0	2379030..2379704	-	224	53713316	gidB	BF2027	-	glucose-inhibited division protein B
2026	 44.21	0	2379744..2380598	-	284	53713317	-	BF2028	-	hypothetical protein
2027	 46.46	0	2380737..2381132	+	131	53713318	-	BF2029	-	hypothetical protein
2028	 49.80	+1	2381312..2383528	+	738	53713319	-	BF2030	-	putative TonB-dependent outer membrane receptor protein
2029	 41.99	0	2383579..2383890	+	103	53713320	-	BF2031	-	putative heavy-metal binding protein
2030	 51.79	+1	2383942..2386152	+	736	53713321	-	BF2032	-	cation-transporting ATPase
2031	 45.12	0	2386329..2387168	-	279	53713322	-	BF2033	-	AraC-type transcription regulator
2032	 50.00	+1	2387234..2387899	+	221	53713323	-	BF2034	-	lipoate-protein ligase B
2033	 47.98	0	2388220..2388417	+	65	53713324	-	BF2035	-	hypothetical protein
2034	 49.16	+1	2388472..2389248	-	258	53713325	-	BF2036	-	putative xylanase
2035	 53.01	+1	2389286..2390149	-	287	53713326	-	BF2037	-	putative xylanase
2036	 52.54	+1	2390146..2392134	-	662	53713327	-	BF2038	-	putative oligopeptide transporter
2037	 44.44	0	2392265..2392660	-	131	53713328	-	BF2039	-	hypothetical protein
2038	 50.45	+1	2392844..2394163	-	439	53713329	-	BF2040	-	putative two-component system sensor histidine kinase
2039	 50.69	+1	2394183..2395553	-	456	53713330	-	BF2041	-	two-component system response regulator
2040	 47.61	0	2395742..2397100	+	452	53713331	-	BF2042	-	hypothetical protein
2041	 47.57	0	2397282..2397857	+	191	53713332	-	BF2043	-	hypothetical protein
2042	 44.96	0	2397817..2398650	+	277	53713333	-	BF2044	-	hypothetical protein
2043	 44.73	0	2398664..2401075	+	803	53713334	-	BF2045	-	putative ABC transporter permease
2044	 44.74	0	2401092..2401766	+	224	53713335	-	BF2046	-	putative ABC transporter ATP-binding protein
2045	 45.33	0	2401819..2402418	-	199	53713336	-	BF2047	-	hypothetical protein
2046	 44.06	0	2402434..2403039	-	201	53713337	-	BF2048	-	GTPase EngB
2047	 44.51	0	2403054..2404511	-	485	53713338	-	BF2049	-	Na+/solute symporter
2048	 37.02	-1	2405008..2405523	-	171	53713339	-	BF2050	-	hypothetical protein
2049	 34.00	-1	2405510..2405809	+	99	53713340	-	BF2051	-	hypothetical protein
2050	 38.20	0	2405804..2406214	-	136	53713341	-	BF2052	-	hypothetical protein
2051	 46.44	0	2406491..2407108	+	205	53713342	-	BF2053	-	recombination protein RecR
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.