IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
150	 57.52	+2	161501..161806	+	101	53711441	-	BF0150	-	hypothetical protein
151	 55.10	+2	161884..162246	-	120	53711442	-	BF0151	-	hypothetical protein
152	 54.21	+1	162258..163493	-	411	53711443	-	BF0152	-	tyrosine type site-specific recombinase
153	 32.76	-1	163848..164198	+	116	53711444	-	BF0153	-	hypothetical protein
154	 34.48	-1	164234..165457	+	407	53711445	-	BF0154	-	putative pyrogenic exotoxin B
155	 33.60	-1	165475..165855	+	126	53711446	-	BF0155	-	hypothetical protein
156	 41.43	0	166147..166566	-	139	53711447	-	BF0156	-	hypothetical protein
157	 32.24	-1	166871..167053	+	60	53711448	-	BF0157	-	hypothetical protein
158	 40.38	0	167016..167441	+	141	53711449	-	BF0158	-	hypothetical protein
159	 38.10	0	167606..168487	+	293	53711450	-	BF0159	-	hypothetical protein
160	 46.62	0	169155..170780	-	541	53711451	-	BF0160	-	hypothetical protein
161	 47.28	0	171402..172634	-	410	53711452	-	BF0161	-	hypothetical protein
162	 46.49	0	172741..173439	+	232	53711453	-	BF0162	-	hypothetical protein
163	 50.24	+1	173768..174796	+	342	53711454	ruvB	BF0163	-	Holliday junction DNA helicase B
164	 45.47	0	174789..176321	+	510	53711455	-	BF0164	-	polysaccharide biosynthesis protein
165	 47.73	0	176324..177691	+	455	53711456	-	BF0165	-	putative integral membrane protein
166	 48.58	0	177743..179920	+	725	53711457	-	BF0166	-	hypothetical protein
167	 48.38	0	179970..180833	-	287	53711458	-	BF0167	-	hypothetical protein
168	 44.29	0	180917..181336	-	139	53711459	-	BF0168	-	hypothetical protein
169	 49.50	+1	181580..183490	-	636	53711460	-	BF0169	-	ATP-dependent RNA helicase
170	 46.02	0	183585..184640	-	351	53711461	-	BF0170	-	hypothetical protein
171	 46.58	0	184825..185745	-	306	53711462	-	BF0171	-	fructokinase
172	 46.70	0	185733..186338	-	201	53711463	-	BF0172	-	putative sugar isomerase
173	 48.40	0	186338..186868	-	176	53711464	-	BF0173	-	lysine decarboxylase
174	 45.99	0	186970..188217	+	415	53711465	-	BF0174	-	putative zinc protease YmxG
175	 43.73	0	188383..188757	-	124	53711466	-	BF0175	-	hypothetical protein
176	 44.44	0	188981..189511	+	176	53711467	-	BF0176	-	hypothetical protein
177	 47.64	0	189658..190866	-	402	53711468	-	BF0177	-	mannonate dehydratase
178	 49.32	+1	190963..191775	-	270	53711469	-	BF0178	-	D-mannonate oxidoreductase
179	 43.72	0	191904..192548	-	214	53711470	-	BF0179	-	hypothetical protein
180	 45.73	0	192612..193547	-	311	53711471	-	BF0180	-	signal peptidase I
181	 45.12	0	193555..195039	-	494	53711472	-	BF0181	-	signal peptidase I
182	 45.40	0	195044..195772	-	242	53711473	-	BF0182	-	dihydrodipicolinate reductase
183	 46.34	0	195868..197136	+	422	53711474	-	BF0183	-	hypothetical protein
184	 44.70	0	197261..197788	+	175	53711475	-	BF0184	-	hypothetical protein
185	 48.45	0	197982..198914	-	310	53711476	-	BF0185	-	nifR3 family TIM-barrel protein
186	 45.95	0	198921..200141	-	406	53711477	-	BF0186	-	hypothetical protein
187	 45.79	0	200372..201013	+	213	53711478	-	BF0187	-	hypothetical protein
188	 44.10	0	201115..201885	-	256	53711479	-	BF0188	-	UDP-N-acetylglucosamine acyltransferase
189	 48.28	0	201905..203296	-	463	53711480	-	BF0189	-	outer membrane protein oprM precursor
190	 47.78	0	203313..206516	-	1067	53711481	-	BF0190	-	AcrB/AcrD family multidrug resistance protein
191	 45.63	0	206541..207695	-	384	53711482	-	BF0191	-	AcrA/AcrE family multidrug resistance protein
192	 45.25	0	208004..211108	-	1034	53711483	-	BF0192	-	beta-galactosidase
193	 44.90	0	211214..213133	+	639	53711484	-	BF0193	-	hypothetical protein
194	 46.99	0	213072..213950	+	292	53711485	-	BF0194	-	hypothetical protein
195	 49.38	+1	213940..214344	-	134	53711486	-	BF0195	-	putative phenylacetic acid degradation protein
196	 48.44	0	214455..215930	-	491	53711487	cysS	BF0196	-	cysteinyl-tRNA synthetase
197	 39.39	0	216164..216328	-	54	53711488	-	BF0197	-	hypothetical protein
198	 47.19	0	216485..217321	-	278	53711489	-	BF0198	-	haloacid dehalogenase-like hydrolase
199	 34.96	-1	217385..218062	-	225	53711490	-	BF0199	-	two-component system response regulator
200	 33.11	-1	218072..219424	-	450	53711491	-	BF0200	-	two-component system sensor histidine kinase
201	 28.52	-2	219782..221173	+	463	53711492	-	BF0201	-	arylsulfatase regulator (Fe-S oxidoreductase)
202	 24.22	-2	221166..221516	+	116	53711493	-	BF0202	-	hypothetical protein
203	 27.08	-2	221513..222184	+	223	53711494	-	BF0203	-	hypothetical protein
204	 38.14	0	222190..222480	+	96	53711495	-	BF0204	-	hypothetical protein
205	 36.31	-1	222539..223846	+	435	53711496	-	BF0205	-	hypothetical protein
206	 33.33	-1	223871..224176	+	101	53711497	-	BF0206	-	hypothetical protein
207	 39.58	0	224358..224885	+	175	53711498	-	BF0207	-	hypothetical protein
208	 34.43	-1	225098..226378	+	426	53711499	-	BF0208	-	hypothetical protein
209	 46.58	0	226735..227421	+	228	53711500	-	BF0209	-	two-component system response regulator
210	 45.61	0	227418..228785	+	455	53711501	-	BF0210	-	two-component system sensor histidine kinase
211	 46.64	0	228945..231596	+	883	53711502	-	BF0211	-	Mg2+ transport ATPase protein B
212	 45.67	0	231661..232746	+	361	53711503	-	BF0212	-	hypothetical protein
213	 40.85	0	232967..233764	+	265	53711504	-	BF0213	-	hypothetical protein
214	 44.15	0	233811..236861	-	1016	53711505	-	BF0214	-	Snf2 family helicase
215	 42.56	0	236913..238007	+	364	53711506	-	BF0215	-	tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase
216	 43.65	0	238067..239578	-	503	53711507	-	BF0216	-	putative auxin-regulated protein
217	 45.50	0	239748..240758	+	336	53711508	pfkA	BF0217	-	6-phosphofructokinase
218	 41.81	0	240777..241649	-	290	53711509	-	BF0218	-	ribonuclease III
219	 45.53	0	241654..242916	-	420	53711510	-	BF0219	-	3-oxoacyl-[acyl-carrier-protein] synthase II
220	 40.51	0	242932..243168	-	78	53711511	-	BF0220	-	acyl carrier protein
221	 42.76	0	243318..243890	+	190	53711512	-	BF0221	-	phosphoribosylglycinamide formyltransferase
222	 44.70	0	243928..244974	-	348	53711513	-	BF0222	-	erythronate-4-phosphate dehydrogenase
223	 41.70	0	245107..245823	+	238	53711514	-	BF0223	-	hypothetical protein
224	 40.90	0	245828..246541	+	237	53711515	-	BF0224	-	hypothetical protein
225	 37.61	0	246510..247445	-	311	53711516	-	BF0225	-	lipopolysaccharide 1,2-glucosyltransferase
226	 39.69	0	247473..248495	-	340	53711517	-	BF0226	-	lipopolysaccharide core biosynthesis protein LpsA
227	 40.05	0	248498..249301	-	267	53711518	-	BF0227	-	glycosyltransferase
228	 35.95	-1	249422..250492	-	356	53711519	-	BF0228	-	putative glycosyltransferase
229	 41.83	0	250913..252748	+	611	53711520	-	BF0229	-	ABC transporter ATP-binding protein
230	 42.58	0	252751..253983	+	410	53711521	-	BF0230	-	hypothetical protein
231	 45.24	0	253987..254616	-	209	53711522	-	BF0231	-	ribonuclease H-related protein
232	 44.78	0	254736..255338	+	200	53711523	-	BF0232	-	nitroreductase
233	 41.53	0	255331..255513	-	60	53711524	-	BF0233	-	hypothetical protein
234	 36.27	-1	255967..256170	+	67	53711525	-	BF0234	-	hypothetical protein
235	 45.19	0	256298..256837	+	179	53711526	-	BF0235	-	shikimate kinase
236	 45.78	0	256984..259482	+	832	53711527	-	BF0236	-	hypothetical protein
237	 43.18	0	259490..261256	+	588	53711528	-	BF0237	-	heat shock protein HtpG
238	 40.74	0	261265..262344	+	359	53711529	-	BF0238	-	hypothetical protein
239	 44.06	0	262402..264294	+	630	53711530	-	BF0239	-	arginine decarboxylase
240	 44.02	0	264422..265207	+	261	53711531	-	BF0240	-	putative acetylglutamate kinase
241	 39.61	0	265269..265778	+	169	53711532	-	BF0241	-	RNA polymerase ECF-type sigma factor
242	 42.25	0	265762..266277	+	171	53711533	-	BF0242	-	hypothetical protein
243	 39.62	0	266282..266758	+	158	53711534	-	BF0243	-	hypothetical protein
244	 40.13	0	266946..267725	-	259	53711535	-	BF0244	-	hypothetical protein
245	 40.41	0	267745..268479	-	244	53711536	-	BF0245	-	hypothetical protein
246	 44.21	0	268600..269298	+	232	53711537	-	BF0246	-	putative zinc protease
247	 38.60	0	269460..269858	-	132	53711538	-	BF0247	-	hypothetical protein
248	 34.80	-1	269860..271020	+	386	53711539	-	BF0248	-	hypothetical protein
249	 36.84	-1	271181..271408	+	75	53711540	-	BF0249	-	hypothetical protein
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.