IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1708	 38.50	0	1982867..1986196	+	1109	53712999	-	BF1710	-	hypothetical protein
1709	 36.20	-1	1986218..1987786	+	522	53713000	-	BF1711	-	hypothetical protein
1710	 43.08	0	1988597..1988791	+	64	53713001	-	BF1712	-	hypothetical protein
1711	 41.16	0	1989398..1992667	+	1089	53713002	-	BF1713	-	hypothetical protein
1712	 39.02	0	1992696..1994312	+	538	53713003	-	BF1714	-	hypothetical protein
1713	 39.33	0	1994418..1995668	-	416	53713004	-	BF1715	-	hypothetical protein
1714	 27.42	-2	1996081..1996266	-	61	53713005	-	BF1716	-	hypothetical protein
1715	 33.33	-1	1996359..1997681	-	440	53713006	-	BF1717	-	putative ATPase
1716	 38.96	0	1998161..2001412	+	1083	53713007	-	BF1718	-	hypothetical protein
1717	 37.41	-1	2001433..2003052	+	539	53713008	-	BF1719	-	hypothetical protein
1718	 38.07	0	2003249..2004727	+	492	53713009	-	BF1720	-	alpha-L-fucosidase
1719	 28.10	-2	2004877..2005392	-	171	53713010	-	BF1721	-	hypothetical protein
1720	 39.65	0	2006097..2009420	+	1107	53713011	-	BF1722	-	hypothetical protein
1721	 38.45	0	2009438..2011000	+	520	53713012	-	BF1723	-	hypothetical protein
1722	 40.14	0	2011115..2012686	-	523	53713013	-	BF1724	-	hypothetical protein
1723	 39.97	0	2012714..2015983	-	1089	53713014	-	BF1725	-	hypothetical protein
1724	 41.93	0	2016683..2019904	+	1073	53713015	-	BF1726	-	hypothetical protein
1725	 42.91	0	2019916..2021931	+	671	53713016	-	BF1727	-	hypothetical protein
1726	 30.69	-2	2021974..2022162	+	62	53713017	-	BF1728	-	hypothetical protein
1727	 42.45	0	2022215..2023849	+	544	53713018	-	BF1729	-	sialidase
1728	 40.98	0	2023881..2025893	+	670	53713019	-	BF1730	-	beta-N-acetylhexosaminidase
1729	 37.10	-1	2025914..2026576	+	220	53713020	-	BF1731	-	sialate O-acetylesterase
1730	 43.27	0	2026573..2028645	+	690	53713021	-	BF1732	-	sialate O-acetylesterase
1731	 41.58	0	2028667..2031237	+	856	53713022	-	BF1733	-	beta-mannosidase
1732	 42.41	0	2031257..2033581	+	774	53713023	-	BF1734	-	beta-N-acetylhexosaminidase
1733	 47.65	0	2033592..2034806	+	404	53713024	-	BF1735	-	hypothetical protein
1734	 45.59	0	2034874..2036946	+	690	53713025	-	BF1736	-	beta-N-acetylhexosaminidase
1735	 44.04	0	2037007..2039256	+	749	53713026	-	BF1737	-	putative outer membrane protein
1736	 45.12	0	2039270..2041771	+	833	53713027	-	BF1738	-	beta-galactosidase
1737	 43.13	0	2041868..2044612	+	914	53713028	-	BF1739	-	putative outer membrane protein involved in nutrient binding
1738	 44.42	0	2044627..2046258	+	543	53713029	-	BF1740	-	putative outer membrane protein involved in nutrient binding
1739	 46.29	0	2046425..2049211	+	928	53713030	-	BF1741	-	putative beta-galactosidase
1740	 46.67	0	2049322..2050506	-	394	53713031	-	BF1742	-	chaperone protein DnaJ
1741	 43.54	0	2050558..2051145	-	195	53713032	-	BF1743	-	GrpE protein
1742	 44.36	0	2051381..2052994	+	537	53713033	-	BF1744	-	ABC transporter ATP-binding protein
1743	 45.04	0	2053157..2053720	+	187	53713034	-	BF1745	-	RNA polymerase ECF-type sigma factor
1744	 47.04	0	2053717..2054139	+	140	53713035	-	BF1746	-	hypothetical protein
1745	 44.57	0	2054159..2055226	+	355	53713036	-	BF1747	-	hypothetical protein
1746	 43.46	0	2055369..2056415	-	348	53713037	-	BF1748	-	hypothetical protein
1747	 43.56	0	2056520..2057389	+	289	53713038	-	BF1749	-	putative metal-dependent membrane protease
1748	 40.66	0	2057610..2058647	+	345	53713039	-	BF1750	-	1-phosphatidylinositol phosphodiesterase precursor
1749	 39.16	0	2058812..2059669	+	285	53713040	-	BF1751	-	transcriptional regulator
1750	 41.05	0	2059818..2062964	+	1048	53713041	-	BF1752	-	hypothetical protein
1751	 40.01	0	2062976..2064607	+	543	53713042	-	BF1753	-	hypothetical protein
1752	 41.97	0	2064630..2067560	+	976	53713043	-	BF1754	-	putative alpha-1,2-mannosidase
1753	 44.10	0	2067577..2068440	+	287	53713044	-	BF1755	-	hypothetical protein
1754	 42.71	0	2068478..2069629	+	383	53713045	-	BF1756	-	alkaline phosphatase
1755	 43.61	0	2069648..2071252	+	534	53713046	-	BF1757	-	hypothetical protein
1756	 45.85	0	2071487..2072716	+	409	53713047	-	BF1758	-	hypothetical protein
1757	 44.15	0	2072800..2074251	+	483	53713048	-	BF1759	-	Icc family phosphohydrolase
1758	 41.16	0	2074265..2075440	-	391	53713049	-	BF1760	-	transcriptional regulator
1759	 52.02	+1	2075754..2076422	-	222	53713050	-	BF1761	-	hypothetical protein
1760	 47.58	0	2076235..2077020	+	261	53713051	-	BF1762	-	putative metal-dependent membrane protease
1761	 47.53	0	2077265..2078440	-	391	53713052	-	BF1763	-	putative outer membrane protein
1762	 44.51	0	2078437..2080566	-	709	53713053	-	BF1764	-	hypothetical protein
1763	 46.37	0	2080578..2081183	-	201	53713054	-	BF1765	-	hypothetical protein
1764	 40.00	0	2081249..2082118	-	289	53713055	-	BF1766	-	hypothetical protein
1765	 37.82	0	2082140..2082295	-	51	53713056	-	BF1767	-	hypothetical protein
1766	 30.85	-2	2082329..2083174	-	281	53713057	-	BF1768	-	hypothetical protein
1767	 36.51	-1	2083179..2084312	-	377	53713058	-	BF1769	-	hypothetical protein
1768	 34.88	-1	2084287..2085447	-	386	53713059	-	BF1770	-	hypothetical protein
1769	 37.04	-1	2085449..2085664	-	71	53713060	-	BF1771	-	hypothetical protein
1770	 44.89	0	2085674..2085898	+	74	53713061	-	BF1772	-	hypothetical protein
1771	 51.77	+1	2085874..2086410	+	178	53713062	-	BF1773	-	hypothetical protein
1772	 41.93	0	2086919..2087884	+	321	53713063	-	BF1774	-	IS110 family transposase
1773	 32.08	-1	2088373..2088531	-	52	53713064	-	BF1775	-	hypothetical protein
1774	 31.85	-2	2088799..2090346	+	515	53713065	-	BF1776	-	hypothetical protein
1775	 30.26	-2	2090481..2090675	+	64	53713066	-	BF1777	-	hypothetical protein
1776	 34.41	-1	2091031..2092140	-	369	53713067	-	BF1778	-	hypothetical protein
1777	 34.20	-1	2092147..2094231	-	694	53713068	-	BF1779	-	hypothetical protein
1778	 42.34	0	2095228..2095749	+	173	53713069	-	BF1780	-	hypothetical protein
1779	 49.22	+1	2095910..2097124	+	404	53713070	-	BF1781	-	tyrosine type site-specific recombinase
1780	 44.80	0	2097745..2098311	+	188	53713071	-	BF1782	-	hypothetical protein
1781	 48.25	0	2098328..2099440	+	370	53713072	-	BF1783	-	hypothetical protein
1782	 46.97	0	2099445..2100581	+	378	53713073	-	BF1784	-	clostripain-related protein
1783	 44.06	0	2100819..2102468	+	549	53713074	-	BF1785	-	hypothetical protein
1784	 42.21	0	2102564..2103487	+	307	53713075	-	BF1786	-	hypothetical protein
1785	 46.69	0	2103514..2105085	+	523	53713076	-	BF1787	-	hypothetical protein
1786	 44.47	0	2105104..2106216	+	370	53713077	-	BF1788	-	hypothetical protein
1787	 45.20	0	2106243..2107211	+	322	53713078	-	BF1789	-	hypothetical protein
1788	 45.71	0	2107232..2108209	+	325	53713079	-	BF1790	-	hypothetical protein
1789	 42.07	0	2108237..2109175	+	312	53713080	-	BF1791	-	hypothetical protein
1790	 45.41	0	2109192..2110193	+	333	53713081	-	BF1792	-	hypothetical protein
1791	 42.72	0	2110197..2111165	+	322	53713082	-	BF1793	-	hypothetical protein
1792	 41.59	0	2111190..2112182	+	330	53713083	-	BF1794	-	hypothetical protein
1793	 44.51	0	2112196..2113260	+	354	53713084	-	BF1795	-	hypothetical protein
1794	 43.80	0	2113276..2114202	+	308	53713085	-	BF1796	-	hypothetical protein
1795	 44.97	0	2114221..2115792	+	523	53713086	-	BF1797	-	hypothetical protein
1796	 44.44	0	2115836..2116906	+	356	53713087	-	BF1798	-	hypothetical protein
1797	 43.68	0	2116903..2117859	+	318	53713088	-	BF1799	-	hypothetical protein
1798	 44.67	0	2117801..2119432	+	543	53713089	-	BF1800	-	hypothetical protein
1799	 43.65	0	2119433..2120392	+	319	53713090	-	BF1801	-	hypothetical protein
1800	 54.51	+2	2120487..2121671	+	394	53713091	-	BF1802	-	hypothetical protein
1801	 53.22	+1	2121808..2123808	+	666	53713092	-	BF1803	-	hypothetical protein
1802	 50.14	+1	2123814..2124182	+	122	53713093	-	BF1804	-	hypothetical protein
1803	 50.41	+1	2124224..2125207	+	327	53713094	-	BF1805	-	hypothetical protein
1804	 53.91	+1	2125341..2127464	-	707	53713095	-	BF1806	-	RNA-binding protein
1805	 49.32	+1	2127576..2129495	+	639	53713096	-	BF1807	-	two-component system sensor histidine kinase
1806	 46.49	0	2129612..2131351	+	579	53713097	-	BF1808	-	2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
1807	 48.31	0	2131358..2131831	+	157	53713098	-	BF1809	-	GAF domain-containing protein
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.