IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1668	 43.47	0	1935347..1936777	+	476	53712959	cysN	BF1669	-	sulfate adenylyltransferase subunit 1
1669	 41.37	0	1936848..1937954	+	368	53712960	-	BF1670	-	hypothetical protein
1670	 44.24	0	1937970..1938932	+	320	53712961	-	BF1671	-	hypothetical protein
1671	 41.10	0	1939201..1939599	-	132	53712962	-	BF1672	-	hypothetical protein
1672	 45.19	0	1939823..1940944	-	373	53712963	-	BF1673	-	outer membrane porin F precursor
1673	 41.30	0	1940946..1941761	-	271	53712964	-	BF1674	-	hypothetical protein
1674	 41.55	0	1941813..1944026	-	737	53712965	-	BF1675	-	hypothetical protein
1675	 36.83	-1	1944043..1944987	-	314	53712966	-	BF1676	-	hypothetical protein
1676	 35.38	-1	1945290..1946510	+	406	53712967	-	BF1677	-	tyrosine type site-specific recombinase
1677	 38.22	0	1947230..1948477	+	415	53712968	-	BF1679	-	hypothetical protein
1678	 40.58	0	1948488..1949564	+	358	53712969	-	BF1680	-	hypothetical protein
1679	 43.07	0	1949632..1950381	+	249	53712970	-	BF1681	-	hypothetical protein
1680	 44.24	0	1950443..1951561	+	372	53712971	-	BF1682	-	major outer membrane protein OmpA
1681	 41.01	0	1951683..1952099	+	138	53712972	-	BF1683	-	Holliday junction resolvase-like protein
1682	 40.90	0	1952135..1952689	+	184	53712973	def	BF1684	-	peptide deformylase
1683	 38.67	0	1952808..1954025	-	405	53712974	-	BF1685	-	hypothetical protein
1684	 42.65	0	1954328..1956376	+	682	53712975	-	BF1686	-	hypothetical protein
1685	 44.00	0	1956457..1958397	+	646	53712976	-	BF1687	-	threonyl-tRNA synthetase
1686	 39.87	0	1958516..1959127	+	203	53712977	infC	BF1688	-	translation initiation factor IF-3
1687	 36.36	-1	1959193..1959390	+	65	53712978	rpmI	BF1689	-	50S ribosomal protein L35
1688	 41.88	0	1959491..1959841	+	116	53712979	rplT	BF1690	-	50S ribosomal protein L20
1689	 42.68	0	1960270..1961061	+	263	53712980	-	BF1691	-	hypothetical protein
1690	 40.35	0	1961136..1961705	-	189	53712981	-	BF1692	-	xanthine phosphoribosyltransferase
1691	 44.27	0	1961791..1963098	-	435	53712982	-	BF1693	-	phenylacetate-coenzyme A ligase
1692	 42.39	0	1963202..1963786	-	194	53712983	-	BF1694	-	indolepyruvate oxidoreductase subunit B
1693	 45.07	0	1963790..1965382	-	530	53712984	-	BF1695	-	indolepyruvate oxidoreductase subunit IorA
1694	 41.14	0	1965466..1966503	-	345	53712985	-	BF1696	-	hypothetical protein
1695	 40.73	0	1966661..1967539	-	292	53712986	-	BF1697	-	putative endonuclease
1696	 38.84	0	1968134..1969696	-	520	53712987	-	BF1698	-	putative cell surface antigen
1697	 30.30	-2	1969855..1970019	-	54	53712988	-	BF1699	-	hypothetical protein
1698	 38.01	0	1970389..1972293	+	634	53712989	-	BF1700	-	capsular polysaccharide biosynthesis protein CapD
1699	 40.56	0	1972408..1974966	+	852	53712990	-	BF1701	-	putative capsule polysaccharide export protein
1700	 39.35	0	1974972..1976084	+	370	53712991	-	BF1702	-	putative protein involved in capsular polysaccharide biosynthesis
1701	 41.62	0	1976060..1976590	+	176	53712992	-	BF1703	-	putative transcriptional regulator
1702	 42.83	0	1976539..1977054	+	171	53712993	-	BF1704	-	hypothetical protein
1703	 36.81	-1	1977051..1978259	-	402	53712994	-	BF1705	-	putative xylose repressor
1704	 39.98	0	1978557..1979474	+	305	53712995	-	BF1706	-	N-acetylneuraminate lyase
1705	 42.19	0	1979498..1980682	+	394	53712996	-	BF1707	-	renin-binding protein-related protein
1706	 41.16	0	1980698..1981936	+	412	53712997	-	BF1708	-	major facilitator family transporter
1707	 38.03	0	1981951..1982397	+	148	53712998	-	BF1709	-	hypothetical protein
1708	 38.50	0	1982867..1986196	+	1109	53712999	-	BF1710	-	hypothetical protein
1709	 36.20	-1	1986218..1987786	+	522	53713000	-	BF1711	-	hypothetical protein
1710	 43.08	0	1988597..1988791	+	64	53713001	-	BF1712	-	hypothetical protein
1711	 41.16	0	1989398..1992667	+	1089	53713002	-	BF1713	-	hypothetical protein
1712	 39.02	0	1992696..1994312	+	538	53713003	-	BF1714	-	hypothetical protein
1713	 39.33	0	1994418..1995668	-	416	53713004	-	BF1715	-	hypothetical protein
1714	 27.42	-2	1996081..1996266	-	61	53713005	-	BF1716	-	hypothetical protein
1715	 33.33	-1	1996359..1997681	-	440	53713006	-	BF1717	-	putative ATPase
1716	 38.96	0	1998161..2001412	+	1083	53713007	-	BF1718	-	hypothetical protein
1717	 37.41	-1	2001433..2003052	+	539	53713008	-	BF1719	-	hypothetical protein
1718	 38.07	0	2003249..2004727	+	492	53713009	-	BF1720	-	alpha-L-fucosidase
1719	 28.10	-2	2004877..2005392	-	171	53713010	-	BF1721	-	hypothetical protein
1720	 39.65	0	2006097..2009420	+	1107	53713011	-	BF1722	-	hypothetical protein
1721	 38.45	0	2009438..2011000	+	520	53713012	-	BF1723	-	hypothetical protein
1722	 40.14	0	2011115..2012686	-	523	53713013	-	BF1724	-	hypothetical protein
1723	 39.97	0	2012714..2015983	-	1089	53713014	-	BF1725	-	hypothetical protein
1724	 41.93	0	2016683..2019904	+	1073	53713015	-	BF1726	-	hypothetical protein
1725	 42.91	0	2019916..2021931	+	671	53713016	-	BF1727	-	hypothetical protein
1726	 30.69	-2	2021974..2022162	+	62	53713017	-	BF1728	-	hypothetical protein
1727	 42.45	0	2022215..2023849	+	544	53713018	-	BF1729	-	sialidase
1728	 40.98	0	2023881..2025893	+	670	53713019	-	BF1730	-	beta-N-acetylhexosaminidase
1729	 37.10	-1	2025914..2026576	+	220	53713020	-	BF1731	-	sialate O-acetylesterase
1730	 43.27	0	2026573..2028645	+	690	53713021	-	BF1732	-	sialate O-acetylesterase
1731	 41.58	0	2028667..2031237	+	856	53713022	-	BF1733	-	beta-mannosidase
1732	 42.41	0	2031257..2033581	+	774	53713023	-	BF1734	-	beta-N-acetylhexosaminidase
1733	 47.65	0	2033592..2034806	+	404	53713024	-	BF1735	-	hypothetical protein
1734	 45.59	0	2034874..2036946	+	690	53713025	-	BF1736	-	beta-N-acetylhexosaminidase
1735	 44.04	0	2037007..2039256	+	749	53713026	-	BF1737	-	putative outer membrane protein
1736	 45.12	0	2039270..2041771	+	833	53713027	-	BF1738	-	beta-galactosidase
1737	 43.13	0	2041868..2044612	+	914	53713028	-	BF1739	-	putative outer membrane protein involved in nutrient binding
1738	 44.42	0	2044627..2046258	+	543	53713029	-	BF1740	-	putative outer membrane protein involved in nutrient binding
1739	 46.29	0	2046425..2049211	+	928	53713030	-	BF1741	-	putative beta-galactosidase
1740	 46.67	0	2049322..2050506	-	394	53713031	-	BF1742	-	chaperone protein DnaJ
1741	 43.54	0	2050558..2051145	-	195	53713032	-	BF1743	-	GrpE protein
1742	 44.36	0	2051381..2052994	+	537	53713033	-	BF1744	-	ABC transporter ATP-binding protein
1743	 45.04	0	2053157..2053720	+	187	53713034	-	BF1745	-	RNA polymerase ECF-type sigma factor
1744	 47.04	0	2053717..2054139	+	140	53713035	-	BF1746	-	hypothetical protein
1745	 44.57	0	2054159..2055226	+	355	53713036	-	BF1747	-	hypothetical protein
1746	 43.46	0	2055369..2056415	-	348	53713037	-	BF1748	-	hypothetical protein
1747	 43.56	0	2056520..2057389	+	289	53713038	-	BF1749	-	putative metal-dependent membrane protease
1748	 40.66	0	2057610..2058647	+	345	53713039	-	BF1750	-	1-phosphatidylinositol phosphodiesterase precursor
1749	 39.16	0	2058812..2059669	+	285	53713040	-	BF1751	-	transcriptional regulator
1750	 41.05	0	2059818..2062964	+	1048	53713041	-	BF1752	-	hypothetical protein
1751	 40.01	0	2062976..2064607	+	543	53713042	-	BF1753	-	hypothetical protein
1752	 41.97	0	2064630..2067560	+	976	53713043	-	BF1754	-	putative alpha-1,2-mannosidase
1753	 44.10	0	2067577..2068440	+	287	53713044	-	BF1755	-	hypothetical protein
1754	 42.71	0	2068478..2069629	+	383	53713045	-	BF1756	-	alkaline phosphatase
1755	 43.61	0	2069648..2071252	+	534	53713046	-	BF1757	-	hypothetical protein
1756	 45.85	0	2071487..2072716	+	409	53713047	-	BF1758	-	hypothetical protein
1757	 44.15	0	2072800..2074251	+	483	53713048	-	BF1759	-	Icc family phosphohydrolase
1758	 41.16	0	2074265..2075440	-	391	53713049	-	BF1760	-	transcriptional regulator
1759	 52.02	+1	2075754..2076422	-	222	53713050	-	BF1761	-	hypothetical protein
1760	 47.58	0	2076235..2077020	+	261	53713051	-	BF1762	-	putative metal-dependent membrane protease
1761	 47.53	0	2077265..2078440	-	391	53713052	-	BF1763	-	putative outer membrane protein
1762	 44.51	0	2078437..2080566	-	709	53713053	-	BF1764	-	hypothetical protein
1763	 46.37	0	2080578..2081183	-	201	53713054	-	BF1765	-	hypothetical protein
1764	 40.00	0	2081249..2082118	-	289	53713055	-	BF1766	-	hypothetical protein
1765	 37.82	0	2082140..2082295	-	51	53713056	-	BF1767	-	hypothetical protein
1766	 30.85	-2	2082329..2083174	-	281	53713057	-	BF1768	-	hypothetical protein
1767	 36.51	-1	2083179..2084312	-	377	53713058	-	BF1769	-	hypothetical protein
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.