IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1579	 46.15	0	1832385..1833578	+	397	53712870	-	BF1578	-	hypothetical protein
1580	 45.53	0	1833743..1835218	+	491	53712871	-	BF1579	-	hypothetical protein
1581	 42.71	0	1835215..1835598	+	127	53712872	-	BF1580	-	hypothetical protein
1582	 47.29	0	1835740..1836570	+	276	53712873	-	BF1581	-	hypothetical protein
1583	 45.82	0	1836596..1838461	+	621	53712874	-	BF1582	-	ABC transporter ATP-binding protein
1584	 48.80	+1	1838458..1839291	+	277	53712875	-	BF1583	-	putative histidinol-phosphatase
1585	 44.33	0	1839255..1840127	+	290	53712876	-	BF1584	-	beta-glucanase precursor
1586	 46.91	0	1840142..1842166	-	674	53712877	-	BF1585	-	chondroitinase AC precursor
1587	 47.09	0	1842250..1843485	-	411	53712878	-	BF1586	-	hypothetical protein
1588	 48.25	0	1843656..1844855	+	399	53712879	-	BF1588	-	aspartate aminotransferase
1589	 46.79	0	1844865..1846172	+	435	53712880	-	BF1589	-	ABC transporter permease protein
1590	 49.87	+1	1846178..1847350	-	390	53712881	-	BF1590	-	hypothetical protein
1591	 47.85	0	1847421..1848419	-	332	53712882	-	BF1591	-	hypothetical protein
1592	 50.76	+1	1848488..1849738	-	416	53712883	-	BF1592	-	putative two-component system sensor histidine kinase
1593	 51.64	+1	1849744..1851081	-	445	53712884	-	BF1593	-	two-component system response regulator
1594	 49.92	+1	1851362..1852681	+	439	53712885	-	BF1594	-	putative outer membrane efflux protein
1595	 51.28	+1	1852776..1854023	+	415	53712886	-	BF1595	-	ABC transporter permease
1596	 47.26	0	1854036..1856441	+	801	53712887	-	BF1596	-	putative ABC transporter permease
1597	 49.79	+1	1856463..1857179	+	238	53712888	-	BF1597	-	ABC transporter ATP-binding protein
1598	 48.62	0	1857176..1859596	+	806	53712889	-	BF1598	-	putative ABC transporter permease
1599	 49.71	+1	1859768..1861123	-	451	53712890	-	BF1599	-	putative NADH dehydrogenase
1600	 51.40	+1	1861535..1862176	-	213	53712891	bioD	BF1600	-	dithiobiotin synthetase
1601	 50.14	+1	1862211..1863686	-	491	53712892	-	BF1601	-	putative biotin synthesis protein BioC
1602	 49.08	+1	1863694..1864887	-	397	53712893	-	BF1602	-	8-amino-7-oxononanoate synthase
1603	 52.87	+1	1865026..1867272	-	748	53712894	-	BF1603	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
1604	 48.01	0	1867269..1867670	-	133	53712895	-	BF1604	-	hypothetical protein
1605	 48.13	0	1867997..1871125	+	1042	53712896	-	BF1605	-	hypothetical protein
1606	 45.95	0	1871161..1872825	+	554	53712897	-	BF1606	-	hypothetical protein
1607	 46.93	0	1872961..1874460	-	499	53712898	-	BF1608	-	L-lactate permease
1608	 45.41	0	1874665..1876113	-	482	53712899	-	BF1609	-	hypothetical protein
1609	 46.26	0	1876165..1876752	-	195	53712900	-	BF1610	-	hypothetical protein
1610	 50.03	+1	1877020..1878564	+	514	53712901	-	BF1611	-	propionyl-CoA carboxylase beta chain
1611	 48.21	0	1878583..1880094	+	503	53712902	-	BF1612	-	biotin carboxylase
1612	 46.86	0	1880108..1880632	+	174	53712903	-	BF1613	-	biotin carboxyl carrier protein
1613	 47.82	0	1880738..1882000	-	420	53712904	-	BF1614	-	hypothetical protein
1614	 45.43	0	1882447..1884108	+	553	53712905	-	BF1615	-	hypothetical protein
1615	 44.95	0	1884130..1885722	+	530	53712906	-	BF1616	-	hypothetical protein
1616	 41.55	0	1885903..1886109	-	68	53712907	-	BF1617	-	hypothetical protein
1617	 46.67	0	1886674..1888023	+	449	53712908	-	BF1618	-	dihydrolipoamide dehydrogenase
1618	 47.01	0	1888023..1888724	+	233	53712909	-	BF1619	-	lipoate-protein ligase A
1619	 35.68	-1	1888911..1889123	-	70	53712910	-	BF1620	-	hypothetical protein
1620	 49.71	+1	1889232..1890599	+	455	53712911	-	BF1621	-	lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex
1621	 49.63	+1	1890743..1892779	+	678	53712912	-	BF1622	-	2-oxoisovalerate dehydrogenase beta subunit
1622	 44.77	0	1892798..1893304	+	168	53712913	-	BF1623	-	flavodoxin FldA
1623	 47.33	0	1893381..1894223	-	280	53712914	prmA	BF1624	-	ribosomal protein L11 methyltransferase
1624	 39.09	0	1894865..1895194	+	109	53712915	-	BF1625	-	hypothetical protein
1625	 33.33	-1	1895449..1895610	+	53	53712916	-	BF1626	-	hypothetical protein
1626	 34.59	-1	1895720..1895878	-	52	53712917	-	BF1627	-	hypothetical protein
1627	 33.61	-1	1896213..1897670	+	485	53712918	-	BF1628	-	hypothetical protein
1628	 30.71	-2	1897678..1898211	+	177	53712919	-	BF1629	-	hypothetical protein
1629	 37.99	0	1898396..1898932	+	178	53712920	-	BF1630	-	hypothetical protein
1630	 33.70	-1	1899064..1899339	-	91	53712921	-	BF1631	-	hypothetical protein
1631	 45.88	0	1899595..1900917	+	440	53712922	-	BF1632	-	hypothetical protein
1632	 33.90	-1	1900954..1902537	+	527	53712923	-	BF1633	-	putative hemin receptor
1633	 34.50	-1	1902939..1904057	+	372	53712924	-	BF1634	-	hypothetical protein
1634	 47.44	0	1904135..1904602	-	155	53712925	-	BF1635	-	cytidine/deoxycytidylate deaminase
1635	 47.99	0	1904770..1905663	-	297	53712926	-	BF1636	-	hypothetical protein
1636	 44.22	0	1905677..1906126	-	149	53712927	-	BF1637	-	hypothetical protein
1637	 47.54	0	1906155..1906682	-	175	53712928	-	BF1638	-	hypothetical protein
1638	 48.85	+1	1906577..1907098	-	173	53712929	-	BF1639	-	putative RNA polymerase ECF-type sigma factor
1639	 38.65	0	1907043..1907249	-	68	53712930	-	BF1640	-	hypothetical protein
1640	 48.83	+1	1907252..1908238	-	328	53712931	-	BF1641	-	putative oxidoreductase
1641	 44.44	0	1908291..1908542	+	83	53712932	-	BF1642	-	hypothetical protein
1642	 48.85	+1	1908477..1909301	-	274	53712933	-	BF1643	-	glutamine ABC transporter glutamine-binding protein
1643	 46.74	0	1909310..1911352	-	680	53712934	-	BF1644	-	hypothetical protein
1644	 46.22	0	1911475..1912017	-	180	53712935	-	BF1645	-	ketoisovalerate oxidoreductase subunit VorA
1645	 47.51	0	1912036..1912797	-	253	53712936	-	BF1646	-	ketoisovalerate oxidoreductase subunit VorA
1646	 39.08	0	1912894..1913067	-	57	53712937	-	BF1647	-	hypothetical protein
1647	 49.31	+1	1913078..1914160	-	360	53712938	-	BF1648	-	2-ketoisovalerate ferredoxin reductase
1648	 44.30	0	1914172..1914399	-	75	53712939	-	BF1649	-	hypothetical protein
1649	 40.58	0	1914418..1914693	-	91	53712940	-	BF1650	-	hypothetical protein
1650	 48.05	0	1915003..1915437	-	144	53712941	-	BF1651	-	ribose 5-phosphate isomerase B
1651	 49.00	+1	1915520..1917529	-	669	53712942	-	BF1652	-	transketolase
1652	 45.19	0	1917684..1918838	-	384	53712943	-	BF1653	-	galactokinase
1653	 45.40	0	1918874..1920199	-	441	53712944	-	BF1654	-	glucose/galactose transporter
1654	 46.81	0	1920250..1921347	-	365	53712945	-	BF1655	-	aldose 1-epimerase precursor
1655	 43.11	0	1921611..1922582	+	323	53712946	-	BF1656	-	mannose-6-phosphate isomerase
1656	 48.11	0	1922648..1922911	-	87	53712947	-	BF1657	-	hypothetical protein
1657	 36.89	-1	1922916..1923281	-	121	53712948	-	BF1658	-	hypothetical protein
1658	 41.43	0	1923308..1923517	-	69	53712949	-	BF1659	-	hypothetical protein
1659	 45.09	0	1923815..1925098	-	427	53712950	-	BF1660	-	ATP-dependent RNA helicase DeaD
1660	 45.40	0	1925289..1926059	+	256	53712951	-	BF1661	-	putative short-chain dehydrogenase
1661	 42.37	0	1926174..1926671	+	165	53712952	-	BF1662	-	hypothetical protein
1662	 39.36	0	1926989..1927801	+	270	53712953	-	BF1663	-	hypothetical protein
1663	 47.20	0	1928054..1930729	-	891	53712954	-	BF1664	-	beta-galactosidase
1664	 46.15	0	1931364..1932182	+	272	53712955	-	BF1665	-	sulfite synthesis pathway protein CysQ
1665	 43.35	0	1932203..1933759	+	518	53712956	-	BF1666	-	putative Na+/sulfate symporter
1666	 45.98	0	1933788..1934396	+	202	53712957	-	BF1667	-	putative adenylylsulfate kinase
1667	 44.85	0	1934424..1935335	+	303	53712958	-	BF1668	-	sulfate adenylyltransferase subunit 2
1668	 43.47	0	1935347..1936777	+	476	53712959	cysN	BF1669	-	sulfate adenylyltransferase subunit 1
1669	 41.37	0	1936848..1937954	+	368	53712960	-	BF1670	-	hypothetical protein
1670	 44.24	0	1937970..1938932	+	320	53712961	-	BF1671	-	hypothetical protein
1671	 41.10	0	1939201..1939599	-	132	53712962	-	BF1672	-	hypothetical protein
1672	 45.19	0	1939823..1940944	-	373	53712963	-	BF1673	-	outer membrane porin F precursor
1673	 41.30	0	1940946..1941761	-	271	53712964	-	BF1674	-	hypothetical protein
1674	 41.55	0	1941813..1944026	-	737	53712965	-	BF1675	-	hypothetical protein
1675	 36.83	-1	1944043..1944987	-	314	53712966	-	BF1676	-	hypothetical protein
1676	 35.38	-1	1945290..1946510	+	406	53712967	-	BF1677	-	tyrosine type site-specific recombinase
1677	 38.22	0	1947230..1948477	+	415	53712968	-	BF1679	-	hypothetical protein
1678	 40.58	0	1948488..1949564	+	358	53712969	-	BF1680	-	hypothetical protein
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.