IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1471	 48.10	0	1711203..1712042	+	279	53712762	-	BF1469	-	nicotinate-nucleotide pyrophosphorylase
1472	 49.68	+1	1712400..1712864	+	154	53712763	-	BF1470	-	RNA polymerase ECF-type sigma factor
1473	 48.41	0	1712848..1713888	+	346	53712764	-	BF1471	-	hypothetical protein
1474	 45.95	0	1713907..1714437	+	176	53712765	-	BF1472	-	hypothetical protein
1475	 47.09	0	1714451..1715155	+	234	53712766	-	BF1473	-	hypothetical protein
1476	 51.01	+1	1715213..1716157	+	314	53712767	-	BF1474	-	dioxygenase
1477	 49.82	+1	1716253..1717362	-	369	53712768	-	BF1475	-	alanine dehydrogenase
1478	 50.33	+1	1717551..1719203	+	550	53712769	-	BF1476	-	hypothetical protein
1479	 48.84	+1	1719252..1720889	+	545	53712770	-	BF1477	-	putative secreted peptidase
1480	 46.05	0	1720997..1722742	+	581	53712771	-	BF1478	-	phosphoglucomutase phosphomannomutase
1481	 41.82	0	1722812..1723129	+	105	53712772	-	BF1479	-	hypothetical protein
1482	 31.69	-2	1723663..1724211	+	182	53712773	-	BF1480	-	RNA polymerase ECF-type sigma factor
1483	 34.29	-1	1724264..1725199	+	311	53712774	-	BF1481	-	putative anti-sigma factor
1484	 41.40	0	1725348..1728743	+	1131	53712775	-	BF1482	-	hypothetical protein
1485	 42.58	0	1728759..1730456	+	565	53712776	-	BF1483	-	hypothetical protein
1486	 39.65	0	1730498..1730956	+	152	53712777	-	BF1484	-	hypothetical protein
1487	 42.45	0	1731071..1732573	+	500	53712778	-	BF1485	-	alpha-galactosidase precursor
1488	 37.65	0	1732894..1733055	-	53	53712779	-	BF1486	-	hypothetical protein
1489	 48.27	0	1733103..1733999	+	298	53712780	-	BF1487	-	histidine decarboxylase
1490	 49.36	+1	1734044..1734199	+	51	53712781	-	BF1488	-	hypothetical protein
1491	 49.94	+1	1734127..1734909	-	260	53712782	-	BF1489	-	NADH pyrophosphatase
1492	 48.36	0	1734941..1736530	-	529	53712783	-	BF1490	-	putative ABC transporter ATP-binding protein
1493	 50.84	+1	1736847..1738223	-	458	53712784	-	BF1491	-	putative pyridine nucleotide-disulfide oxidoreductase
1494	 49.92	+1	1738280..1738882	-	200	53712785	-	BF1492	-	hypothetical protein
1495	 47.26	0	1738970..1739809	-	279	53712786	-	BF1493	-	transcriptional regulator
1496	 49.48	+1	1739812..1740294	-	160	53712787	-	BF1494	-	cytidine deaminase
1497	 48.67	0	1740410..1741309	+	299	53712788	-	BF1495	-	hemagglutinin
1498	 45.24	0	1741379..1741588	+	69	53712789	-	BF1496	-	hypothetical protein
1499	 47.60	0	1741633..1742880	+	415	53712790	-	BF1497	-	ABC transporter permease
1500	 47.24	0	1743001..1744266	+	421	53712791	-	BF1498	-	hypothetical protein
1501	 49.09	+1	1744286..1745554	+	422	53712792	-	BF1499	-	ABC transporter permease
1502	 46.02	0	1745573..1746880	+	435	53712793	-	BF1500	-	hypothetical protein
1503	 48.95	+1	1746884..1748170	+	428	53712794	-	BF1501	-	ABC transporter permease
1504	 46.33	0	1748195..1749502	+	435	53712795	-	BF1502	-	hypothetical protein
1505	 47.59	0	1749518..1750780	+	420	53712796	-	BF1503	-	ABC transporter permease
1506	 43.33	0	1750850..1751749	-	299	53712797	-	BF1504	-	transcriptional regulator
1507	 46.40	0	1752066..1752731	+	221	53712798	-	BF1505	-	ABC transporter ATP-binding protein
1508	 48.47	0	1752773..1754047	+	424	53712799	-	BF1506	-	hypothetical protein
1509	 47.40	0	1754056..1755306	+	416	53712800	-	BF1507	-	ABC transporter permease
1510	 48.05	0	1755466..1756131	+	221	53712801	-	BF1508	-	ABC transporter ATP-binding protein
1511	 45.12	0	1756147..1756791	+	214	53712802	-	BF1509	-	hypothetical protein
1512	 48.58	0	1756805..1758103	+	432	53712803	-	BF1510	-	hypothetical protein
1513	 47.31	0	1758118..1759362	+	414	53712804	-	BF1511	-	ABC transporter permease
1514	 45.81	0	1759458..1762070	+	870	53712805	-	BF1512	-	two-component system sensor histidine kinase
1515	 47.44	0	1762198..1762509	+	103	53712806	-	BF1513	-	hypothetical protein
1516	 47.66	0	1762525..1763997	+	490	53712807	-	BF1514	-	putative outer membrane protein OprM precursor
1517	 48.59	0	1764147..1765496	+	449	53712808	-	BF1515	-	two-component system response regulator
1518	 47.02	0	1765540..1766832	+	430	53712809	-	BF1516	-	two-component system sensor histidine kinase
1519	 48.15	0	1766821..1768467	-	548	53712810	-	BF1517	-	aspartate aminotransferase
1520	 51.41	+1	1768509..1770206	-	565	53712811	-	BF1518	-	putative transport protein
1521	 47.91	0	1770395..1771327	+	310	53712812	-	BF1519	-	hypothetical protein
1522	 39.90	0	1771368..1771565	-	65	53712813	-	BF1520	-	hypothetical protein
1523	 37.22	-1	1771658..1771966	+	102	53712814	-	BF1521	-	hypothetical protein
1524	 28.26	-2	1772259..1772711	-	150	53712815	-	BF1522	-	hypothetical protein
1525	 36.49	-1	1772677..1773183	-	168	53712816	-	BF1523	-	hypothetical protein
1526	 29.75	-2	1773309..1773671	-	120	53712817	-	BF1524	-	hypothetical protein
1527	 47.43	0	1774143..1775057	-	304	53712818	-	BF1525	-	hypothetical protein
1528	 47.70	0	1775196..1775543	-	115	53712819	-	BF1526	-	hypothetical protein
1529	 48.84	+1	1776631..1777191	+	186	53712820	-	BF1528	-	putative transcriptional regulator UpxY-like protein
1530	 47.83	0	1777203..1777685	+	160	53712821	-	BF1529	-	hypothetical protein
1531	 36.18	-1	1777755..1779578	+	607	53712822	-	BF1530	-	putative dehydrogenase
1532	 40.16	0	1779584..1781311	+	575	53712823	-	BF1531	-	hypothetical protein
1533	 36.21	-1	1781331..1781573	+	80	53712824	-	BF1532	-	putative acyl carrier protein
1534	 36.21	-1	1781577..1783106	+	509	53712825	-	BF1533	-	hypothetical protein
1535	 36.78	-1	1783141..1783953	+	270	53712826	-	BF1534	-	glucose-1-phosphate cytidylyltransferase
1536	 35.82	-1	1783946..1784347	+	133	53712827	-	BF1535	-	hypothetical protein
1537	 40.77	0	1784344..1785432	+	362	53712828	-	BF1536	-	CDP-glucose-4,6-dehydratase
1538	 32.21	-1	1785432..1786322	+	296	53712829	-	BF1537	-	putative dTDP-glucose 4,6-dehydratase
1539	 33.33	-1	1786336..1787523	+	395	53712830	-	BF1538	-	hypothetical protein
1540	 38.02	0	1787530..1788426	+	298	53712831	-	BF1539	-	2,5-diketo-D-gluconic acid reductase
1541	 34.21	-1	1788411..1789322	+	303	53712832	-	BF1540	-	hypothetical protein
1542	 31.20	-2	1789319..1790536	+	405	53712833	-	BF1541	-	putative succinyltransferase
1543	 36.21	-1	1790639..1791784	+	381	53712834	-	BF1542	-	hypothetical protein
1544	 34.73	-1	1791768..1792769	+	333	53712835	-	BF1543	-	glycosyltransferase
1545	 37.28	-1	1793211..1794173	+	320	53712836	-	BF1544	-	hypothetical protein
1546	 26.83	-2	1794997..1796256	+	419	53712837	-	BF1545	-	O-antigen polymerase
1547	 32.23	-1	1796198..1797010	+	270	53712838	-	BF1546	-	glycosyltransferase
1548	 34.97	-1	1797015..1798112	+	365	53712839	-	BF1547	-	putative glycosyltransferase
1549	 31.88	-2	1798159..1799193	+	344	53712840	-	BF1548	-	glycosyltransferase
1550	 32.80	-1	1799198..1800688	+	496	53712841	-	BF1549	-	hypothetical protein
1551	 37.79	0	1800706..1801602	+	298	53712842	-	BF1550	-	putative UDP-galactose 4-epimerase
1552	 40.82	0	1801721..1802668	+	315	53712843	-	BF1551	-	putative UndPP-QuiNAc-P-transferase
1553	 43.81	0	1802727..1804301	-	524	53712844	-	BF1552	-	ribonuclease G
1554	 38.77	0	1804580..1804855	-	91	53712845	-	BF1553	-	DNA-binding protein HU
1555	 45.75	0	1805061..1806107	+	348	53712846	-	BF1554	-	A/G-specific adenine glycosylase
1556	 46.91	0	1806153..1807721	+	522	53712847	-	BF1555	-	putative arylsulfatase precursor
1557	 47.28	0	1807809..1808267	+	152	53712848	-	BF1556	-	single-strand binding protein
1558	 42.74	0	1808697..1809749	+	350	53712849	-	BF1557	-	hemolysin-related protein
1559	 45.04	0	1809764..1810438	+	224	53712850	-	BF1558	-	siderophore (surfactin) biosynthesis regulatory protein
1560	 45.58	0	1810435..1812762	+	775	53712851	-	BF1559	-	hypothetical protein
1561	 44.91	0	1812847..1813062	-	71	53712852	-	BF1560	-	hypothetical protein
1562	 40.92	0	1813076..1813378	-	100	53712853	-	BF1561	-	hypothetical protein
1563	 45.72	0	1813668..1814531	+	287	53712854	-	BF1562	-	hypothetical protein
1564	 46.32	0	1814491..1815660	+	389	53712855	-	BF1563	-	hypothetical protein
1565	 48.01	0	1815687..1816715	+	342	53712856	-	BF1564	-	hypothetical protein
1566	 48.08	0	1816741..1818279	+	512	53712857	-	BF1565	-	hypothetical protein
1567	 33.20	-1	1818433..1819893	-	486	53712858	-	BF1566	-	hypothetical protein
1568	 35.96	-1	1819960..1821327	-	455	53712859	-	BF1567	-	hypothetical protein
1569	 51.49	+1	1821363..1823405	-	680	53712860	-	BF1568	-	hypothetical protein
1570	 51.79	+1	1823452..1825488	-	678	53712861	-	BF1569	-	outer membrane vitamin B12 receptor protein
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.