IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
962	 44.87	0	1160562..1161350	-	262	53712253	-	BF0961	-	putative histidinol-phosphatase
963	 45.95	0	1161347..1161877	-	176	53712254	-	BF0962	-	putative 5-formyltetrahydrofolate cyclo-ligase
964	 47.16	0	1161807..1163534	-	575	53712255	-	BF0963	-	carboxy-terminal processing protease precursor
965	 44.98	0	1163612..1164049	-	145	53712256	-	BF0964	-	deoxycytidylate deaminase
966	 37.84	0	1164061..1164570	-	169	53712257	-	BF0965	-	hypothetical protein
967	 45.58	0	1164577..1166634	-	685	53712258	-	BF0966	-	peptidyl-dipeptidase
968	 42.91	0	1166858..1167859	-	333	53712259	-	BF0967	-	glyceraldehyde 3-phosphate dehydrogenase
969	 42.40	0	1167999..1168439	+	146	53712260	-	BF0968	-	putative ion channel
970	 47.11	0	1168470..1169993	+	507	53712261	guaA	BF0969	-	bifunctional GMP synthase/glutamine amidotransferase protein
971	 46.67	0	1170598..1172622	-	674	53712262	-	BF0970	-	hypothetical protein
972	 46.21	0	1172638..1175907	-	1089	53712263	-	BF0971	-	hypothetical protein
973	 41.84	0	1176855..1177712	+	285	53712264	-	BF0972	-	enoyl-[acyl-carrier-protein] reductase
974	 42.50	0	1177717..1178730	+	337	53712265	-	BF0973	-	hypothetical protein
975	 45.39	0	1178757..1179461	+	234	53712266	-	BF0974	-	putative S-adenosylmethionine-dependent methytransferase
976	 44.24	0	1179427..1180545	-	372	53712267	-	BF0975	-	hypothetical protein
977	 48.67	0	1180610..1181476	-	288	53712268	-	BF0976	-	lipoyl synthase
978	 46.72	0	1181603..1183813	-	736	53712269	-	BF0977	-	dipeptidyl peptidase IV
979	 46.46	0	1183918..1184214	-	98	53712270	-	BF0978	-	hypothetical protein
980	 45.82	0	1184251..1184979	+	242	53712271	-	BF0979	-	hypothetical protein
981	 47.21	0	1184989..1185831	+	280	53712272	-	BF0980	-	putative two-component system response regulator
982	 33.88	-1	1185923..1186105	+	60	53712273	-	BF0981	-	hypothetical protein
983	 46.15	0	1186165..1187100	+	311	53712274	-	BF0982	-	hypothetical protein
984	 43.75	0	1187220..1188419	+	399	53712275	-	BF0983	-	flavoprotein
985	 45.51	0	1188459..1189271	+	270	53712276	nagB	BF0984	-	glucosamine-6-phosphate deaminase
986	 39.67	0	1189365..1189790	-	141	53712277	-	BF0985	-	hypothetical protein
987	 48.46	0	1189854..1190468	-	204	53712278	-	BF0986	-	hypothetical protein
988	 45.27	0	1190516..1193029	-	837	53712279	-	BF0987	-	outer membrane assembly protein
989	 47.73	0	1193267..1195267	-	666	53712280	-	BF0988	-	putative helicase
990	 45.80	0	1195269..1196054	-	261	53712281	-	BF0989	-	hypothetical protein
991	 45.91	0	1196226..1197410	+	394	53712282	-	BF0990	-	putative aminotransferase
992	 46.12	0	1197442..1198677	+	411	53712283	-	BF0991	-	O-acetylhomoserine sulfhydrylase
993	 40.03	0	1198703..1199284	+	193	53712284	-	BF0992	-	RNA polymerase ECF-type sigma factor
994	 41.73	0	1199394..1200500	+	368	53712285	-	BF0993	-	putative anti-sigma factor
995	 38.39	0	1200692..1201126	+	144	53712286	-	BF0994	-	hypothetical protein
996	 40.32	0	1201139..1201882	-	247	53712287	-	BF0995	-	CRP family transcriptional regulator
997	 39.36	0	1201998..1202594	+	198	53712288	-	BF0996	-	hypothetical protein
998	 40.41	0	1202632..1203309	-	225	53712289	-	BF0997	-	hypothetical protein
999	 42.66	0	1203480..1205420	+	646	53712290	-	BF0998	-	4-alpha-glucanotransferase
1000	 41.96	0	1205435..1206709	+	424	53712291	-	BF0999	-	putative glycosyltransferase
1001	 41.40	0	1206722..1208110	+	462	53712292	-	BF1000	-	putative alpha-amylase
1002	 39.77	0	1208496..1209986	-	496	53712293	-	BF1001	-	hypothetical protein
1003	 42.28	0	1210010..1210702	-	230	53712294	-	BF1002	-	putative glycogen synthase
1004	 43.46	0	1211081..1211929	+	282	53712295	-	BF1003	-	pantoate-beta-alanine ligase
1005	 41.81	0	1211952..1212305	+	117	53712296	-	BF1004	-	aspartate alpha-decarboxylase
1006	 48.01	0	1212488..1214776	-	762	53712297	-	BF1005	-	putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta
1007	 46.25	0	1214919..1216079	-	386	53712298	-	BF1006	-	glucose/galactose transporter
1008	 46.20	0	1216330..1217604	-	424	53712299	-	BF1007	-	seryl-tRNA synthetase
1009	 32.70	-1	1217640..1217798	-	52	53712300	-	BF1008	-	hypothetical protein
1010	 43.33	0	1217761..1218030	-	89	53712301	rpmA	BF1009	-	50S ribosomal protein L27
1011	 40.88	0	1218053..1218370	-	105	53712302	rplU	BF1010	-	50S ribosomal protein L21
1012	 34.39	-1	1218411..1218599	-	62	53712303	-	BF1011	-	hypothetical protein
1013	 44.00	0	1218626..1218925	-	99	53712304	-	BF1012	-	hypothetical protein
1014	 41.67	0	1218981..1219136	-	51	53712305	-	BF1013	-	hypothetical protein
1015	 46.19	0	1219150..1219818	-	222	53712306	-	BF1014	-	HPr(Ser) phosphatase
1016	 49.03	+1	1219866..1220381	-	171	53712307	-	BF1015	-	putative lipoprotein
1017	 42.09	0	1220386..1221093	-	235	53712308	-	BF1016	-	ATP-binding protein
1018	 43.25	0	1221125..1222606	-	493	53712309	-	BF1017	-	hypothetical protein
1019	 44.11	0	1222703..1225522	-	939	53712310	-	BF1018	-	putative zinc protease
1020	 46.39	0	1225671..1226474	-	267	53712311	-	BF1019	-	2-dehydro-3-deoxyphosphooctonate aldolase
1021	 47.03	0	1226490..1227416	-	308	53712312	-	BF1020	-	hypothetical protein
1022	 45.52	0	1227708..1228634	-	308	53712313	miaA	BF1021	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1023	 43.37	0	1228848..1230053	-	401	53712314	-	BF1022	-	hypothetical protein
1024	 44.81	0	1230050..1230694	-	214	53712315	-	BF1023	-	ABC transporter ATP-binding protein
1025	 41.06	0	1230707..1232260	-	517	53712316	-	BF1024	-	hypothetical protein
1026	 43.91	0	1232288..1232977	-	229	53712317	-	BF1025	-	hypothetical protein
1027	 44.91	0	1232983..1233552	-	189	53712318	-	BF1026	-	hypothetical protein
1028	 43.97	0	1233555..1234814	-	419	53712319	-	BF1027	-	xanthosine permease
1029	 38.89	0	1235478..1235639	-	53	53712320	-	BF1028	-	hypothetical protein
1030	 36.01	-1	1235925..1237082	+	385	53712321	-	BF1029	-	hypothetical protein
1031	 46.40	0	1237465..1238643	-	392	53712322	-	BF1030	-	hypothetical protein
1032	 43.16	0	1238668..1239318	-	216	53712323	-	BF1031	-	hypothetical protein
1033	 42.45	0	1239325..1239960	-	211	53712324	-	BF1032	-	hypothetical protein
1034	 44.50	0	1240073..1242562	+	829	53712325	-	BF1033	-	FtsK/SpoIIIE family cell division protein
1035	 42.83	0	1242587..1243228	+	213	53712326	-	BF1034	-	hypothetical protein
1036	 46.41	0	1243284..1244231	+	315	53712327	-	BF1035	-	thioredoxin reductase
1037	 45.24	0	1244385..1246829	-	814	53712328	-	BF1036	-	beta-hexosaminidase precursor
1038	 42.17	0	1246874..1247575	-	233	53712329	-	BF1037	-	CRP family transcriptional regulator
1039	 37.91	0	1247622..1247774	+	50	53712330	-	BF1038	-	hypothetical protein
1040	 45.16	0	1247781..1247966	-	61	53712331	-	BF1039	-	hypothetical protein
1041	 46.03	0	1247917..1250106	-	729	53712332	-	BF1040	-	glutamine synthetase
1042	 41.08	0	1250346..1252565	+	739	53712333	-	BF1041	-	hypothetical protein
1043	 44.83	0	1252772..1253884	+	370	53712334	-	BF1042	-	RNA-directed DNA polymerase
1044	 43.20	0	1254026..1255819	+	597	53712335	rpsA	BF1043	-	30S ribosomal protein S1
1045	 43.61	0	1255969..1256883	+	304	53712336	-	BF1044	-	ribonuclease Z
1046	 44.75	0	1256956..1257507	+	183	53712337	-	BF1045	-	RNA polymerase ECF-type sigma factor
1047	 44.53	0	1257555..1257938	+	127	53712338	-	BF1046	-	hypothetical protein
1048	 42.19	0	1257967..1258440	+	157	53712339	-	BF1047	-	hypothetical protein
1049	 42.62	0	1258542..1259327	-	261	53712340	mazG	BF1048	-	nucleoside triphosphate pyrophosphohydrolase
1050	 42.37	0	1259333..1260394	-	353	53712341	-	BF1049	-	hypothetical protein
1051	 47.32	0	1260511..1263141	+	876	53712342	valS	BF1050	-	valyl-tRNA synthetase
1052	 46.21	0	1263260..1265161	+	633	53712343	-	BF1051	-	two-component system sensor histidine kinase
1053	 49.18	+1	1265127..1265555	-	142	53712344	-	BF1052	-	hypothetical protein
1054	 46.22	0	1265765..1266346	-	193	53712345	-	BF1053	-	RNA polymerase ECF-type sigma factor
1055	 45.91	0	1266451..1267476	+	341	53712346	-	BF1054	-	putative anti-sigma factor
1056	 35.24	-1	1267580..1267789	+	69	53712347	-	BF1055	-	hypothetical protein
1057	 44.20	0	1267734..1271036	+	1100	53712348	-	BF1056	-	hypothetical protein
1058	 44.84	0	1271050..1272570	+	506	53712349	-	BF1057	-	hypothetical protein
1059	 43.54	0	1272650..1273678	+	342	53712350	-	BF1058	-	hypothetical protein
1060	 42.74	0	1273763..1274836	+	357	53712351	-	BF1059	-	hypothetical protein
1061	 39.93	0	1275039..1275614	-	191	53712352	-	BF1060	-	RNA polymerase ECF-type sigma factor
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.