IslandPathversion 1.0

IslandPath Analysis: Bartonella bacilliformis KC583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.00 STD DEV: 4.11
Bartonella bacilliformis KC583, complete genome - 1..1445021
1283 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
927	 40.78	0	1026261..1026905	-	214	121602782	-	BARBAKC583_0988	-	metallo-beta-lactamase family protein
928	 40.57	0	1027055..1027759	+	234	121602622	-	BARBAKC583_0989	-	DNA-binding response regulator
929	 41.61	0	1027767..1029107	+	446	121602395	-	BARBAKC583_0990	-	sensor histidine kinase
930	 37.72	0	1029160..1029660	-	166	121602262	-	BARBAKC583_0991	-	hypothetical protein
931	 31.62	-1	1029858..1029974	-	38	121602567	-	BARBAKC583_0992	-	hypothetical protein
932	 32.96	-1	1030041..1030307	-	88	121601864	-	BARBAKC583_0993	-	hypothetical protein
933	 39.98	0	1030572..1031429	+	285	121602603	lgt	BARBAKC583_0994	-	prolipoprotein diacylglyceryl transferase
934	 37.24	0	1031429..1032529	+	366	121602661	-	BARBAKC583_0995	-	hypothetical protein
935	 38.76	0	1032588..1033379	+	263	121602116	-	BARBAKC583_0996	-	hypothetical protein
936	 32.50	-1	1033602..1033721	-	39	121602867	-	BARBAKC583_0997	-	hypothetical protein
937	 42.44	0	1033743..1034675	+	310	121602129	prs	BARBAKC583_0998	-	ribose-phosphate pyrophosphokinase
938	 42.23	0	1035111..1035728	+	205	121602891	-	BARBAKC583_0999	-	50S ribosomal protein L25/general stress protein Ctc
939	 34.88	-1	1035808..1036389	+	193	121602644	pth	BARBAKC583_1000	-	peptidyl-tRNA hydrolase
940	 43.63	+1	1036557..1037255	-	232	121602044	-	BARBAKC583_1001	-	ErfK/YbiS/YcfS/YnhG family protein
941	 40.40	0	1037508..1038611	+	367	121602664	engD	BARBAKC583_1002	-	translation-associated GTPase
942	 37.39	0	1038766..1039209	-	147	121601940	-	BARBAKC583_1003	-	PRC-barrel domain-containing protein
943	 34.01	-1	1039420..1039566	+	48	121602805	-	BARBAKC583_1004	-	hypothetical protein
944	 39.74	0	1039663..1040130	+	155	121602085	-	BARBAKC583_1005	-	RNA methyltransferase
945	 39.63	0	1040148..1041401	-	417	121601737	trnT	BARBAKC583_1006	-	tRNA-nucleotidyltransferase
946	 39.05	0	1041651..1042682	+	343	121602311	-	BARBAKC583_1007	-	AAA family ATPase
947	 41.12	0	1042682..1043593	+	303	121601795	-	BARBAKC583_1008	-	hypothetical protein
948	 39.01	0	1043590..1046388	+	932	121602704	-	BARBAKC583_1009	-	hypothetical protein
949	 40.57	0	1046388..1048475	+	695	121601969	-	BARBAKC583_1010	-	hypothetical protein
950	 39.07	0	1048542..1049099	-	185	121602912	-	BARBAKC583_1011	-	acetyltransferase, GNAT family protein
951	 38.98	0	1049371..1050255	+	294	121602306	-	BARBAKC583_1012	-	Ser/Thr protein phosphatase family protein
952	 39.71	0	1050443..1051351	-	302	121601731	czrB	BARBAKC583_1013	-	metal cation efflux protein CzrB
953	 37.61	0	1051693..1051809	-	38	121602537	-	BARBAKC583_1014	-	hypothetical protein
954	 39.46	0	1052206..1053021	+	271	121601762	-	BARBAKC583_1015	-	RNA methyltransferase
955	 42.43	0	1053119..1054294	-	391	121602707	trmU	BARBAKC583_1016	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
956	 42.75	0	1054547..1054822	+	91	121601953	-	BARBAKC583_1017	-	hypothetical protein
957	 36.69	0	1054953..1055339	-	128	121602846	-	BARBAKC583_1018	-	hypothetical protein
958	 38.89	0	1055898..1056599	+	233	121601947	ctrA	BARBAKC583_1019	-	cell cycle transcriptional regulator CtrA
959	 36.46	0	1056794..1057432	-	212	121602758	-	BARBAKC583_1020	-	hypothetical protein
960	 38.22	0	1057627..1058220	+	197	121601988	-	BARBAKC583_1021	-	hypothetical protein
961	 34.42	-1	1058310..1058585	+	91	121602863	-	BARBAKC583_1022	-	hypothetical protein
962	 37.98	0	1058779..1059897	-	372	121602150	-	BARBAKC583_1023	-	DegT/DnrJ/EryC1/StrS family aminotransferase
963	 41.40	0	1059948..1060901	-	317	121602897	-	BARBAKC583_1024	-	Gfo/Idh/MocA family oxidoreductase
964	 37.42	0	1061750..1062532	-	260	121602180	-	BARBAKC583_1026	-	dipeptide ABC transporter, ATP-binding protein
965	 39.84	0	1062529..1063404	-	291	121602431	-	BARBAKC583_1027	-	dipeptide ABC transporter, ATP-binding protein
966	 41.08	0	1063397..1064326	-	309	121601895	-	BARBAKC583_1028	-	dipeptide ABC transporter, permease protein
967	 38.18	0	1064329..1065402	-	357	121602582	-	BARBAKC583_1029	-	dipeptide ABC transporter, permease protein
968	 37.69	0	1065522..1067126	-	534	121602015	-	BARBAKC583_1030	-	dipeptide ABC transporter, periplasmic dipeptide-binding protein
969	 40.35	0	1067361..1067474	-	37	121602888	-	BARBAKC583_1031	-	hypothetical protein
970	 38.64	0	1069409..1070011	-	200	121602156	-	BARBAKC583_1033	-	putative DNA-3-methyladenine glycosylase I
971	 41.30	0	1070013..1071443	-	476	121601929	xseA	BARBAKC583_1034	-	exodeoxyribonuclease VII large subunit
972	 36.59	0	1071809..1072084	+	91	121602653	-	BARBAKC583_1035	-	hypothetical protein
973	 40.24	0	1073177..1073929	+	250	121602453	etfB	BARBAKC583_1037	-	electron transfer flavoprotein, beta subunit
974	 43.66	+1	1073976..1074905	+	309	121602250	etfA	BARBAKC583_1038	-	electron transfer flavoprotein, alpha subunit
975	 39.53	0	1074909..1076570	+	553	121602611	-	BARBAKC583_1039	-	electron transfer flavoprotein-ubiquinone dehydrogenase
976	 39.02	0	1076957..1078099	-	380	121601983	flaA	BARBAKC583_1040	-	flagellin A
977	 40.26	0	1078241..1079020	-	259	121601885	-	BARBAKC583_1041	-	pyrroline-5-carboxylate reductase
978	 41.19	0	1079209..1079577	-	122	121602174	-	BARBAKC583_1042	-	hypothetical protein
979	 39.51	0	1079584..1080489	-	301	121602718	-	BARBAKC583_1043	-	tetrapyrrole methylase family protein
980	 42.35	0	1080529..1081227	-	232	121601691	pyrF	BARBAKC583_1044	-	orotidine 5'-phosphate decarboxylase
981	 40.73	0	1081288..1082382	-	364	121602916	-	BARBAKC583_1045	-	hypothetical protein
982	 48.15	+2	1082926..1083060	+	44	121601647	rpmH	BARBAKC583_1046	-	ribosomal protein L34
983	 41.26	0	1083190..1083555	+	121	121602433	rnpA	BARBAKC583_1047	-	ribonuclease P
984	 37.03	0	1083572..1085410	+	612	121602508	-	BARBAKC583_1048	-	putative inner membrane protein translocase component YidC
985	 38.58	0	1085407..1086054	+	215	121602307	-	BARBAKC583_1049	-	GTPase EngB
986	 40.55	0	1086191..1086883	+	230	121602352	-	BARBAKC583_1050	-	glutathione S-transferase
987	 40.40	0	1087330..1088136	+	268	121601966	dapB	BARBAKC583_1051	-	dihydrodipicolinate reductase
988	 39.77	0	1088162..1088782	+	206	121602512	gpmA	BARBAKC583_1052	-	phosphoglyceromutase
989	 47.37	+2	1088896..1089009	+	37	121602113	-	BARBAKC583_1054	-	hypothetical protein
990	 39.59	0	1089585..1091438	+	617	121602097	-	BARBAKC583_1055	-	hypothetical protein
991	 43.59	+1	1092027..1092689	-	220	121602437	-	BARBAKC583_1057	-	lysozyme
992	 38.53	0	1093447..1093908	+	153	121601683	-	BARBAKC583_1059	-	hypothetical protein
993	 38.04	0	1093977..1094252	-	91	121602133	-	BARBAKC583_1060	-	hypothetical protein
994	 40.84	0	1094584..1094916	-	110	121602170	-	BARBAKC583_1061	-	hypothetical protein
995	 32.59	-1	1094930..1095064	+	44	121602638	-	BARBAKC583_1062	-	hypothetical protein
996	 42.86	0	1095109..1095402	-	97	121602054	-	BARBAKC583_1063	-	hypothetical protein
997	 46.46	+1	1095452..1095946	-	164	121601802	-	BARBAKC583_1064	-	hypothetical protein
998	 40.51	0	1095939..1096133	+	64	121601854	-	BARBAKC583_1065	-	hypothetical protein
999	 35.87	0	1096229..1096504	-	91	121602091	-	BARBAKC583_1066	-	hypothetical protein
1000	 33.01	-1	1097122..1097433	+	103	121602246	-	BARBAKC583_1068	-	hypothetical protein
1001	 38.17	0	1098065..1098808	+	247	121602212	-	BARBAKC583_1070	-	AntA/AntB family antirepressor
1002	 39.05	0	1100420..1100629	+	69	121601822	-	BARBAKC583_1073	-	hypothetical protein
1003	 43.40	+1	1100640..1100798	+	52	121602461	-	BARBAKC583_1075	-	hypothetical protein
1004	 45.61	+1	1100773..1100886	-	37	121602000	-	BARBAKC583_1074	-	hypothetical protein
1005	 37.32	0	1100936..1101688	+	250	121602161	int	BARBAKC583_1076	-	integrase
1006	 38.69	0	1101973..1103895	+	640	121602766	-	BARBAKC583_1077	-	hypothetical protein
1007	 40.36	0	1104356..1106290	+	644	121602331	-	BARBAKC583_1078	-	hypothetical protein
1008	 39.87	0	1106268..1106420	+	50	121601875	-	BARBAKC583_1079	-	hypothetical protein
1009	 40.26	0	1106662..1107051	-	129	121602870	-	BARBAKC583_1080	-	hypothetical protein
1010	 37.47	0	1114927..1115313	+	128	121601703	-	BARBAKC583_1087	-	putative transcriptional regulator
1011	 40.29	0	1115432..1116538	+	368	121602426	-	BARBAKC583_1088	-	MFP family transporter
1012	 37.83	0	1116549..1118126	+	525	121601825	-	BARBAKC583_1089	-	EmrB/QacA family drug resistance transporter
1013	 41.71	0	1118676..1119809	-	377	121602552	-	BARBAKC583_1090	-	pyridoxal-dependent decarboxylase
1014	 40.09	0	1120463..1121380	-	305	121602233	-	BARBAKC583_1091	-	rhodanese-like domain-containing protein
1015	 39.59	0	1121666..1122496	-	276	121602806	fpr	BARBAKC583_1092	-	ferredoxin---NADP reductase
1016	 41.98	0	1123120..1124241	+	373	121602454	alr	BARBAKC583_1093	-	alanine racemase
1017	 42.27	0	1124711..1127506	-	931	121602018	gcvP	BARBAKC583_1094	-	glycine dehydrogenase
1018	 40.11	0	1127512..1127880	-	122	121602585	gcvH	BARBAKC583_1095	-	glycine cleavage system protein H
1019	 42.78	0	1127887..1129008	-	373	121601850	gcvT	BARBAKC583_1096	-	glycine cleavage system aminomethyltransferase T
1020	 40.27	0	1129814..1130476	+	220	121602157	-	BARBAKC583_1097	-	ATP-dependent protease
1021	 40.68	0	1130490..1130666	+	58	121602896	-	BARBAKC583_1098	-	hypothetical protein
1022	 43.59	+1	1132553..1132708	+	51	121602226	-	BARBAKC583_1099	-	hypothetical protein
1023	 31.03	-1	1132722..1132895	+	57	121601774	-	BARBAKC583_1100	-	hypothetical protein
1024	 40.79	0	1135604..1136635	+	343	121602771	asd	BARBAKC583_1101	-	aspartate-semialdehyde dehydrogenase
1025	 38.34	0	1137343..1138161	+	272	121602075	metQ	BARBAKC583_1102	-	D-methionine ABC transporter, periplasmic methionine-binding protein
1026	 39.03	0	1138168..1139202	+	344	121601979	metN	BARBAKC583_1103	-	D-methionine ABC transporter, ATP-binding protein
39.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.