IslandPathversion 1.0

IslandPath Analysis: Bartonella bacilliformis KC583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.00 STD DEV: 4.11
Bartonella bacilliformis KC583, complete genome - 1..1445021
1283 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
843	 35.79	0	924247..925101	+	284	121602286	-	BARBAKC583_0897	-	hypothetical protein
844	 38.29	0	925323..926048	+	241	121602904	lipB	BARBAKC583_0898	-	lipoyltransferase
845	 39.25	0	926128..928206	+	692	121602566	parE	BARBAKC583_0899	-	DNA topoisomerase IV subunit B
846	 39.33	0	928224..930008	-	594	121601735	recJ	BARBAKC583_0900	-	single-stranded-DNA-specific exonuclease RecJ
847	 40.43	0	930296..930760	+	154	121602570	rplM	BARBAKC583_0901	-	50S ribosomal protein L13
848	 39.71	0	930763..931248	+	161	121601811	rpsI	BARBAKC583_0902	-	30S ribosomal protein S9
849	 37.98	0	931408..931773	-	121	121602733	divK	BARBAKC583_0903	-	cell division response regulator DivK
850	 37.25	0	932336..933100	-	254	121602034	-	BARBAKC583_0904	-	N-acetylmuramoyl-L-alanine amidase family protein
851	 23.08	-2	933288..933443	+	51	121602905	-	BARBAKC583_0905	-	hypothetical protein
852	 44.33	+1	933899..934180	-	93	121602033	-	BARBAKC583_0906	-	hypothetical protein
853	 34.69	-1	934315..934461	+	48	121602877	-	BARBAKC583_0907	-	hypothetical protein
854	 41.20	0	935013..935279	-	88	121602348	-	BARBAKC583_0909	-	hypothetical protein
855	 42.36	0	935038..935325	+	95	121602777	-	BARBAKC583_0910	-	putative integrase
856	 41.16	0	936236..940015	-	1259	121601790	-	BARBAKC583_0912	-	adhesin/hemagglutinin
857	 37.50	0	940042..940161	-	39	121601898	-	BARBAKC583_0913	-	hypothetical protein
858	 31.25	-1	940492..940635	+	47	121602074	-	BARBAKC583_0914	-	hypothetical protein
859	 25.20	-2	940822..940944	-	40	121602466	-	BARBAKC583_0915	-	hypothetical protein
860	 36.76	0	941025..942425	+	466	121602222	cycA	BARBAKC583_0916	-	D-serine/D-alanine/glycine transporter
861	 38.53	0	942499..943518	-	339	121601734	ilvC	BARBAKC583_0917	-	ketol-acid reductoisomerase
862	 37.69	0	944210..944944	-	244	121601694	-	BARBAKC583_0918	-	pyridoxal phosphate biosynthetic protein PdxJ
863	 40.09	0	945025..946134	-	369	121602295	-	BARBAKC583_0919	-	hypothetical protein
864	 30.37	-2	947443..947712	+	89	121601999	-	BARBAKC583_0921	-	hypothetical protein
865	 37.56	0	947859..949349	-	496	121602694	-	BARBAKC583_0922	-	protease Do family protein
866	 40.55	0	949572..950444	-	290	121602171	-	BARBAKC583_0923	-	putative HflC protein
867	 40.51	0	950447..951589	-	380	121602393	hflK	BARBAKC583_0924	-	HflK protein
868	 41.37	0	951709..952218	-	169	121602534	folA	BARBAKC583_0925	-	dihydrofolate reductase
869	 37.99	0	952215..953009	-	264	121602325	thyA	BARBAKC583_0926	-	thymidylate synthase
870	 39.07	0	953222..954529	+	435	121602127	kgtP	BARBAKC583_0927	-	alpha-ketoglutarate permease
871	 35.29	0	954621..954926	-	101	121602715	-	BARBAKC583_0928	-	hypothetical protein
872	 35.39	0	955540..956073	+	177	121602746	-	BARBAKC583_0930	-	hypothetical protein
873	 34.43	-1	956084..956266	+	60	121602012	-	BARBAKC583_0931	-	hypothetical protein
874	 38.92	0	956624..959074	+	816	121601965	-	BARBAKC583_0932	-	putative DNA helicase II
875	 39.84	0	959137..959766	-	209	121602444	-	BARBAKC583_0933	-	hexapeptide repeat-containing transferase
876	 38.86	0	959998..960576	+	192	121602363	-	BARBAKC583_0934	-	SCO1/SenC family protein
877	 37.10	0	960603..961478	+	291	121601757	prmA	BARBAKC583_0935	-	ribosomal protein L11 methyltransferase
878	 40.35	0	961496..963319	+	607	121602487	-	BARBAKC583_0936	-	M24 family peptidase
879	 40.76	0	963536..965689	-	717	121602535	ligA	BARBAKC583_0937	-	NAD-dependent DNA ligase LigA
880	 40.35	0	965805..967472	-	555	121602605	recN	BARBAKC583_0938	-	DNA repair protein RecN
881	 39.17	0	967479..968318	-	279	121602062	-	BARBAKC583_0939	-	putative lipoprotein
882	 37.60	0	968542..969408	-	288	121602821	lpxC	BARBAKC583_0940	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
883	 43.23	+1	969629..971407	-	592	121602219	ftsZ	BARBAKC583_0941	-	cell division protein FtsZ
884	 40.57	0	971477..972775	-	432	121602206	ftsA	BARBAKC583_0942	-	cell division protein FtsA
885	 39.05	0	972775..973701	-	308	121602838	ftsQ	BARBAKC583_0943	-	cell division protein FtsQ
886	 41.80	0	973668..974588	-	306	121602474	ddl	BARBAKC583_0944	-	D-alanine--D-alanine ligase
887	 41.44	0	974816..975790	-	324	121601671	murB	BARBAKC583_0945	-	UDP-N-acetylenolpyruvoylglucosamine reductase
888	 39.99	0	975771..977198	-	475	121601881	murC	BARBAKC583_0946	-	UDP-N-acetylmuramate--L-alanine ligase
889	 40.46	0	977182..978318	-	378	121602822	murG	BARBAKC583_0947	-	N-acetylglucosaminyl transferase
890	 38.85	0	978308..979468	-	386	121602452	ftsW	BARBAKC583_0948	-	cell division protein FtsW
891	 38.95	0	979588..980994	-	468	121601920	murD	BARBAKC583_0949	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
892	 38.94	0	980999..982069	-	356	121601765	mraY	BARBAKC583_0950	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
893	 38.62	0	982091..983509	-	472	121602462	murF	BARBAKC583_0951	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
894	 40.91	0	983506..984957	-	483	121601930	murE	BARBAKC583_0952	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
895	 37.58	0	984991..986709	-	572	121602507	-	BARBAKC583_0953	-	putative penicillin binding protein
896	 33.09	-1	986709..987113	-	134	121602673	-	BARBAKC583_0954	-	hypothetical protein
897	 40.46	0	987113..988108	-	331	121602081	mraW	BARBAKC583_0955	-	S-adenosyl-methyltransferase MraW
898	 30.83	-1	989206..989565	-	119	121602801	-	BARBAKC583_0957	-	hypothetical protein
899	 25.16	-2	989890..990048	+	52	121601806	-	BARBAKC583_0958	-	hypothetical protein
900	 41.88	0	990532..992181	-	549	121602394	-	BARBAKC583_0959	-	putative ABC transporter ATP-binding protein
901	 38.92	0	992741..993349	+	202	121601661	-	BARBAKC583_0960	-	isochorismatase family protein
902	 35.80	0	993395..994447	-	350	121602667	-	BARBAKC583_0961	-	hypothetical protein
903	 33.52	-1	994765..995304	+	179	121601800	-	BARBAKC583_0962	-	DNA-binding protein
904	 35.56	0	995669..995848	+	59	121602828	-	BARBAKC583_0963	-	hypothetical protein
905	 34.94	0	996256..997002	+	248	121601985	bp26	BARBAKC583_0965	-	26 kDa periplasmic immunogenic protein
906	 38.48	0	997353..999353	-	666	121601699	rpoD	BARBAKC583_0966	-	RNA polymerase sigma factor RpoD
907	 38.54	0	999691..1001631	-	646	121602151	dnaG	BARBAKC583_0967	-	DNA primase
908	 37.46	0	1001761..1002972	+	403	121601848	-	BARBAKC583_0968	-	small conductance mechanosensitive ion channel (MscS) family protein
909	 38.60	0	1003044..1004732	+	562	121602657	-	BARBAKC583_0969	-	Na+/Pi-cotransporter family protein
910	 37.70	0	1004873..1005124	+	83	121602662	-	BARBAKC583_0970	-	hypothetical protein
911	 42.83	0	1005477..1005992	+	171	121601892	ubiC	BARBAKC583_0971	-	chorismate pyruvate lyase
912	 38.75	0	1006764..1007963	+	399	121602499	carA	BARBAKC583_0972	-	carbamoyl phosphate synthase small subunit
913	 37.67	0	1008129..1009349	-	406	121601778	-	BARBAKC583_0973	-	major facilitator transporter
914	 30.74	-2	1009842..1010072	-	76	121601724	-	BARBAKC583_0974	-	hypothetical protein
915	 39.67	0	1010350..1013835	+	1161	121602238	carB	BARBAKC583_0975	-	carbamoyl phosphate synthase large subunit
916	 35.33	0	1013905..1014054	-	49	121602792	-	BARBAKC583_0976	-	hypothetical protein
917	 39.05	0	1014087..1014296	+	69	121602065	-	BARBAKC583_0977	-	cold-shock DNA-binding family protein
918	 38.99	0	1014729..1015931	+	400	121602224	aatA	BARBAKC583_0979	-	aspartate aminotransferase
919	 34.19	-1	1015904..1016020	-	38	121602077	-	BARBAKC583_0978	-	hypothetical protein
920	 38.52	0	1016669..1017574	-	301	121602215	-	BARBAKC583_0980	-	LysR family transcriptional regulator
921	 41.72	0	1017626..1018579	-	317	121602773	trxB	BARBAKC583_0981	-	thioredoxin-disulfide reductase
922	 39.61	0	1018872..1020272	+	466	121601679	-	BARBAKC583_0982	-	putative potassium uptake protein
923	 39.94	0	1020472..1021530	-	352	121602596	lpcC	BARBAKC583_0983	-	lipopolysaccharide core biosynthesis mannosyltransferase lpcC
924	 41.77	0	1021537..1022010	-	157	121602520	greA	BARBAKC583_0984	-	transcription elongation factor GreA
925	 39.44	0	1022885..1025227	+	780	121602199	uvrB	BARBAKC583_0986	-	excinuclease ABC subunit B
926	 40.85	0	1025694..1026212	+	172	121602794	-	BARBAKC583_0987	-	hypothetical protein
927	 40.78	0	1026261..1026905	-	214	121602782	-	BARBAKC583_0988	-	metallo-beta-lactamase family protein
928	 40.57	0	1027055..1027759	+	234	121602622	-	BARBAKC583_0989	-	DNA-binding response regulator
929	 41.61	0	1027767..1029107	+	446	121602395	-	BARBAKC583_0990	-	sensor histidine kinase
930	 37.72	0	1029160..1029660	-	166	121602262	-	BARBAKC583_0991	-	hypothetical protein
931	 31.62	-1	1029858..1029974	-	38	121602567	-	BARBAKC583_0992	-	hypothetical protein
932	 32.96	-1	1030041..1030307	-	88	121601864	-	BARBAKC583_0993	-	hypothetical protein
933	 39.98	0	1030572..1031429	+	285	121602603	lgt	BARBAKC583_0994	-	prolipoprotein diacylglyceryl transferase
934	 37.24	0	1031429..1032529	+	366	121602661	-	BARBAKC583_0995	-	hypothetical protein
935	 38.76	0	1032588..1033379	+	263	121602116	-	BARBAKC583_0996	-	hypothetical protein
936	 32.50	-1	1033602..1033721	-	39	121602867	-	BARBAKC583_0997	-	hypothetical protein
937	 42.44	0	1033743..1034675	+	310	121602129	prs	BARBAKC583_0998	-	ribose-phosphate pyrophosphokinase
938	 42.23	0	1035111..1035728	+	205	121602891	-	BARBAKC583_0999	-	50S ribosomal protein L25/general stress protein Ctc
939	 34.88	-1	1035808..1036389	+	193	121602644	pth	BARBAKC583_1000	-	peptidyl-tRNA hydrolase
940	 43.63	+1	1036557..1037255	-	232	121602044	-	BARBAKC583_1001	-	ErfK/YbiS/YcfS/YnhG family protein
941	 40.40	0	1037508..1038611	+	367	121602664	engD	BARBAKC583_1002	-	translation-associated GTPase
942	 37.39	0	1038766..1039209	-	147	121601940	-	BARBAKC583_1003	-	PRC-barrel domain-containing protein
39.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.