IslandPathversion 1.0

IslandPath Analysis: Bartonella bacilliformis KC583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.00 STD DEV: 4.11
Bartonella bacilliformis KC583, complete genome - 1..1445021
1283 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
743	 34.76	-1	801150..802619	+	489	121602023	nuoM	BARBAKC583_0790	-	NADH dehydrogenase subunit M
744	 33.33	-1	802632..804095	+	487	121602613	nuoN	BARBAKC583_0791	-	NADH dehydrogenase subunit N
745	 34.46	-1	804102..804902	+	266	121602388	-	BARBAKC583_0792	-	biotin-[acetyl-CoA-carboxylase] ligase
746	 38.40	0	804952..806628	+	558	121601638	-	BARBAKC583_0793	-	putative RNA-metabolising metallo-beta-lactamase
747	 38.54	0	806863..808188	+	441	121602198	proS	BARBAKC583_0794	-	prolyl-tRNA synthetase
748	 35.15	0	808200..809468	+	422	121601808	-	BARBAKC583_0795	-	ABC transporter, permease protein
749	 37.59	0	809468..810148	+	226	121602495	-	BARBAKC583_0796	-	ABC transporter, ATP-binding protein
750	 35.71	0	810225..810518	+	97	121602633	-	BARBAKC583_0797	-	hypothetical protein
751	 37.11	0	810524..814015	+	1163	121602625	mfd	BARBAKC583_0798	-	transcription-repair coupling factor
752	 36.91	0	816192..816806	+	204	121602309	-	BARBAKC583_0800	-	invasion associated locus B family protein
753	 31.88	-1	820035..821273	+	412	121602571	-	BARBAKC583_0802	-	N-acetylmuramoyl-l-alanine amidase family protein
754	 38.23	0	821436..823907	+	823	121601708	-	BARBAKC583_0803	-	penicillin-binding protein, 1A
755	 38.78	0	824125..825256	+	376	121602405	prfB	BARBAKC583_0804	-	peptide chain release factor 2
756	 36.71	0	825372..825845	-	157	121601658	-	BARBAKC583_0805	-	thioredoxin family protein
757	 34.69	-1	825929..827182	-	417	121602511	tyrS	BARBAKC583_0806	-	tyrosyl-tRNA synthetase
758	 21.93	-2	827288..827401	-	37	121602152	-	BARBAKC583_0807	-	hypothetical protein
759	 38.56	0	827553..828260	-	235	121602329	-	BARBAKC583_0808	-	hypothetical protein
760	 36.38	0	828438..829586	+	382	121601986	-	BARBAKC583_0809	-	aminotransferase, class V
761	 36.11	0	829744..831255	+	503	121602810	sufB	BARBAKC583_0810	-	cysteine desulfurase activator complex subunit SufB
762	 35.05	0	831314..832069	+	251	121602478	sufC	BARBAKC583_0811	-	FeS assembly ATPase SufC
763	 33.33	-1	832087..833352	+	421	121602832	sufD	BARBAKC583_0812	-	FeS assembly protein SufD
764	 36.79	0	833362..834606	+	414	121602390	sufS	BARBAKC583_0813	-	cysteine desulfurase SufS
765	 39.55	0	834599..835000	+	133	121601686	-	BARBAKC583_0814	-	FeS assembly SUF system protein
766	 34.32	-1	835542..836756	-	404	121601987	-	BARBAKC583_0816	-	2-octaprenyl-6-methoxyphenyl hydroxylase
767	 33.33	-1	836940..837701	+	253	121602841	pcs	BARBAKC583_0817	-	phosphatidylcholine synthase
768	 35.78	0	837809..838624	-	271	121602590	-	BARBAKC583_0818	-	metallo-beta-lactamase family protein
769	 35.14	0	838635..839408	-	257	121601870	-	BARBAKC583_0819	-	TatD family hydrolase
770	 37.76	0	839398..840957	-	519	121601643	metG	BARBAKC583_0820	-	methionyl-tRNA synthetase
771	 33.81	-1	841031..842074	-	347	121602540	holB	BARBAKC583_0821	-	DNA polymerase III subunit delta'
772	 35.05	0	842071..842712	-	213	121602268	tmk	BARBAKC583_0822	-	thymidylate kinase
773	 33.69	-1	842986..843831	-	281	121602144	-	BARBAKC583_0823	-	rare lipoprotein A
774	 36.80	0	844700..845536	-	278	121602698	-	BARBAKC583_0825	-	PP-loop family protein
775	 39.32	0	845801..846418	-	205	121602011	rpsD	BARBAKC583_0826	-	30S ribosomal protein S4
776	 34.19	-1	846598..847413	-	271	121602574	murI	BARBAKC583_0827	-	glutamate racemase
777	 37.20	0	847413..848240	-	275	121601814	-	BARBAKC583_0828	-	RNA methyltransferase
778	 38.15	0	848590..849420	+	276	121602358	map	BARBAKC583_0829	-	methionine aminopeptidase
779	 35.96	0	849438..850235	+	265	121602861	-	BARBAKC583_0830	-	RadC family DNA repair protein
780	 30.52	-2	850283..850495	-	70	121602164	-	BARBAKC583_0831	-	hypothetical protein
781	 37.60	0	850662..851435	-	257	121602635	-	BARBAKC583_0832	-	hydrolase, alpha/beta fold family protein
782	 30.52	-2	851439..851936	-	165	121601950	-	BARBAKC583_0833	-	hypothetical protein
783	 39.26	0	852038..852577	-	179	121601754	-	BARBAKC583_0834	-	cold-shock DNA-binding family protein
784	 39.46	0	853164..854648	-	494	121602404	gatA	BARBAKC583_0835	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
785	 37.15	0	854679..854966	-	95	121601899	gatC	BARBAKC583_0836	-	glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit
786	 34.98	0	855133..855618	+	161	121602720	-	BARBAKC583_0838	-	hypothetical protein
787	 37.64	0	855603..857228	-	541	121602440	-	BARBAKC583_0837	-	acyl-CoA dehydrogenase family protein
788	 38.92	0	857353..858318	+	321	121601978	pyrB	BARBAKC583_0839	-	aspartate carbamoyltransferase catalytic subunit
789	 38.81	0	858315..859610	+	431	121602852	-	BARBAKC583_0840	-	dihydroorotase
790	 33.02	-1	859628..860263	+	211	121602181	-	BARBAKC583_0841	-	hypothetical protein
791	 39.80	0	860256..861446	+	396	121602381	dprA	BARBAKC583_0842	-	DNA protecting protein DprA
792	 38.28	0	861827..864436	+	869	121601698	topA	BARBAKC583_0843	-	DNA topoisomerase I
793	 34.12	-1	864619..866664	+	681	121602334	rnr	BARBAKC583_0844	-	ribonuclease R
794	 31.84	-1	866944..867144	+	66	121601982	-	BARBAKC583_0845	-	hypothetical protein
795	 32.74	-1	868208..868375	+	55	121602423	rpmG	BARBAKC583_0847	-	50S ribosomal protein L33
796	 32.97	-1	868907..869461	+	184	121601780	-	BARBAKC583_0848	-	nuclease-like protein
797	 38.99	0	869508..870143	+	211	121602558	-	BARBAKC583_0849	-	hypothetical protein
798	 35.83	0	870164..870643	+	159	121601824	grp	BARBAKC583_0850	-	glutamate uptake regulatory protein Grp
799	 39.10	0	870687..871691	-	334	121602695	cobT	BARBAKC583_0851	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
800	 36.70	0	872024..873004	-	326	121602008	dusA	BARBAKC583_0852	-	tRNA-dihydrouridine synthase A
801	 34.36	-1	873371..875908	-	845	121602917	-	BARBAKC583_0853	-	sensor histidine kinase/reponse regulator
802	 36.97	0	876134..876655	+	173	121602389	-	BARBAKC583_0854	-	hypothetical protein
803	 35.29	0	877063..877572	-	169	121602763	-	BARBAKC583_0855	-	flavin reductase family protein
804	 38.10	0	877742..878434	+	230	121602542	rpe	BARBAKC583_0856	-	ribulose-phosphate 3-epimerase
805	 39.54	0	878431..879735	+	434	121602592	purB	BARBAKC583_0857	-	adenylosuccinate lyase
806	 40.44	0	879814..880362	+	182	121601672	-	BARBAKC583_0858	-	alpha/beta fold family hydrolase
807	 37.37	0	880545..881312	+	255	121601990	purC	BARBAKC583_0859	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
808	 35.00	0	881386..881625	+	79	121601852	purS	BARBAKC583_0860	-	phosphoribosylformylglycinamidine synthase, PurS protein
809	 37.37	0	881638..882306	+	222	121602168	purQ	BARBAKC583_0861	-	phosphoribosylformylglycinamidine synthase subunit I
810	 27.50	-2	882409..882528	-	39	121602901	-	BARBAKC583_0862	-	hypothetical protein
811	 40.33	0	882527..884740	+	737	121601697	purL	BARBAKC583_0863	-	phosphoribosylformylglycinamidine synthase II
812	 40.17	0	884807..885040	+	77	121601845	-	BARBAKC583_0864	-	BolA family protein
813	 32.43	-1	885139..885471	+	110	121602734	-	BARBAKC583_0865	-	glutaredoxin-like protein
814	 35.81	0	885545..886798	+	417	121602007	-	BARBAKC583_0866	-	Bcr/CflA subfamily drug resistance transporter
815	 38.96	0	886907..889144	-	745	121602784	parC	BARBAKC583_0867	-	DNA topoisomerase IV subunit A
816	 38.92	0	889349..891139	-	596	121602128	aspS	BARBAKC583_0868	-	aspartyl-tRNA synthetase
817	 37.16	0	891278..892453	+	391	121601718	rnd	BARBAKC583_0869	-	ribonuclease D
818	 36.95	0	892864..893112	+	82	121602298	-	BARBAKC583_0870	-	hypothetical protein
819	 37.27	0	893145..894413	+	422	121601901	-	BARBAKC583_0871	-	salicylate hydroxylase
820	 38.12	0	894474..897959	-	1161	121602736	dnaE	BARBAKC583_0872	-	DNA polymerase III subunit alpha
821	 38.60	0	898839..900755	+	638	121602020	-	BARBAKC583_0873	-	hypothetical protein
822	 38.28	0	901154..902569	-	471	121601761	-	BARBAKC583_0874	-	DEAD/DEAH box helicase domain-containing protein
823	 32.95	-1	902722..903240	-	172	121602599	-	BARBAKC583_0875	-	hypothetical protein
824	 32.53	-1	904448..904822	+	124	121601684	-	BARBAKC583_0877	-	hypothetical protein
825	 38.88	0	904896..907400	+	834	121602716	secDF	BARBAKC583_0878	-	bifunctional preprotein translocase subunit SecD/SecF
826	 36.58	0	908112..909065	+	317	121602024	-	BARBAKC583_0879	-	hypothetical protein
827	 38.19	0	909304..910887	-	527	121602847	-	BARBAKC583_0880	-	integral membrane protein
828	 30.16	-2	911128..911253	+	41	121602126	-	BARBAKC583_0881	-	hypothetical protein
829	 39.02	0	911815..911937	-	40	121601723	-	BARBAKC583_0883	-	hypothetical protein
830	 40.00	0	911984..912148	+	54	121602287	-	BARBAKC583_0884	-	hypothetical protein
831	 37.61	0	912360..912476	-	38	121601729	-	BARBAKC583_0885	-	hypothetical protein
832	 36.51	0	913077..913202	+	41	121602529	-	BARBAKC583_0886	-	hypothetical protein
833	 38.60	0	913970..915907	+	645	121602422	-	BARBAKC583_0888	-	hypothetical protein
834	 32.62	-1	915870..916010	-	46	121601815	-	BARBAKC583_0887	-	hypothetical protein
835	 35.66	0	916019..916147	-	42	121602419	-	BARBAKC583_0889	-	hypothetical protein
836	 40.00	0	916272..918221	+	649	121601846	-	BARBAKC583_0890	-	hypothetical protein
837	 33.74	-1	918392..919630	-	412	121602594	-	BARBAKC583_0891	-	hypothetical protein
838	 30.71	-2	919649..920335	-	228	121602646	-	BARBAKC583_0892	-	hypothetical protein
839	 24.69	-2	920434..920595	+	53	121601980	-	BARBAKC583_0893	-	hypothetical protein
840	 35.94	0	920779..921966	+	395	121602752	-	BARBAKC583_0894	-	hypothetical protein
841	 33.75	-1	921960..923168	+	402	121602186	-	BARBAKC583_0895	-	major facilitator transporter
842	 35.66	0	923603..924247	+	214	121602893	-	BARBAKC583_0896	-	LemA family protein
39.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.