IslandPathversion 1.0

IslandPath Analysis: Bartonella bacilliformis KC583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.00 STD DEV: 4.11
Bartonella bacilliformis KC583, complete genome - 1..1445021
1283 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
702	 37.94	0	752211..753425	-	404	121602400	-	BARBAKC583_0743	-	isocitrate dehydrogenase
703	 32.71	-1	753707..754348	+	213	121601707	-	BARBAKC583_0744	-	hypothetical protein
704	 42.12	0	755316..756305	+	329	121602602	glpX	BARBAKC583_0746	-	fructose 1,6-bisphosphatase II
705	 36.31	0	756404..757510	-	368	121602725	ilvE	BARBAKC583_0747	-	branched-chain amino acid aminotransferase
706	 33.41	-1	758037..760544	-	835	121602858	-	BARBAKC583_0748	-	sporulation and cell division repeat-containing protein
707	 36.69	0	760680..762437	-	585	121602184	argS	BARBAKC583_0749	-	arginyl-tRNA synthetase
708	 38.60	0	762468..763664	-	398	121602687	-	BARBAKC583_0750	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
709	 35.49	0	763771..764094	+	107	121601807	-	BARBAKC583_0751	-	iron-sulfur cluster assembly accessory protein
710	 36.86	0	764155..765117	+	320	121602335	-	BARBAKC583_0752	-	hypothetical protein
711	 34.13	-1	765167..765919	+	250	121601918	-	BARBAKC583_0753	-	putative cytochrome c-type biogenesis protein
712	 36.22	0	765970..767319	+	449	121601801	-	BARBAKC583_0754	-	putative UDP-N-acetylglucosamine pyrophosphorylase
713	 37.83	0	767497..769320	+	607	121602560	glmS	BARBAKC583_0755	-	D-fructose-6-phosphate amidotransferase
714	 40.49	0	769544..771652	-	702	121602903	recG	BARBAKC583_0756	-	ATP-dependent DNA helicase RecG
715	 36.74	0	771789..773549	-	586	121602208	-	BARBAKC583_0757	-	putative microcin immunity protein
716	 40.19	0	773945..775885	-	646	121601964	-	BARBAKC583_0758	-	hypothetical protein
717	 26.32	-2	776209..776322	+	37	121602450	-	BARBAKC583_0759	-	hypothetical protein
718	 39.67	0	776689..778029	-	446	121602177	accC	BARBAKC583_0761	-	acetyl-CoA carboxylase biotin carboxylase subunit
719	 39.54	0	778044..778526	-	160	121602597	accB	BARBAKC583_0762	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
720	 29.70	-2	778743..779540	-	265	121602002	-	BARBAKC583_0763	-	thioredoxin domain-containing protein
721	 36.93	0	779961..780572	-	203	121602889	purN	BARBAKC583_0764	-	phosphoribosylglycinamide formyltransferase
722	 39.04	0	780569..781654	-	361	121602342	purM	BARBAKC583_0765	-	phosphoribosylaminoimidazole synthetase
723	 34.98	0	781822..783036	+	404	121602761	-	BARBAKC583_0766	-	hypothetical protein
724	 35.80	0	783033..783722	+	229	121602210	-	BARBAKC583_0767	-	hypothetical protein
725	 38.89	0	784228..784533	+	101	121601871	-	BARBAKC583_0769	-	putative NADH dehydrogenase (quinone) subunit
726	 37.36	0	784918..785190	-	90	121602740	-	BARBAKC583_0771	-	hypothetical protein
727	 41.27	0	785717..785842	+	41	121601640	-	BARBAKC583_0772	-	hypothetical protein
728	 43.69	+1	785873..786094	+	73	121602760	-	BARBAKC583_0773	-	hypothetical protein
729	 39.33	0	786307..788241	-	644	121601751	-	BARBAKC583_0774	-	hypothetical protein
730	 30.08	-2	788548..788670	+	40	121602314	-	BARBAKC583_0775	-	hypothetical protein
731	 33.61	-1	789462..789827	+	121	121602445	nuoA	BARBAKC583_0778	-	NADH dehydrogenase subunit A
732	 41.75	0	789818..790399	+	193	121602032	nuoB	BARBAKC583_0779	-	NADH dehydrogenase subunit B
733	 38.03	0	790409..791026	+	205	121602302	nuoC	BARBAKC583_0780	-	NADH dehydrogenase subunit C
734	 40.89	0	791112..792302	+	396	121601914	nuoD	BARBAKC583_0781	-	NADH dehydrogenase subunit D
735	 36.87	0	792302..792979	+	225	121602159	nuoE	BARBAKC583_0782	-	NADH dehydrogenase subunit E
736	 41.06	0	793123..794430	+	435	121601753	nuoF	BARBAKC583_0783	-	NADH dehydrogenase I subunit F
737	 39.47	0	794495..796564	+	689	121602038	nuoG	BARBAKC583_0784	-	NADH dehydrogenase subunit G
738	 37.44	0	796589..797635	+	348	121602469	nuoH	BARBAKC583_0785	-	NADH dehydrogenase subunit H
739	 40.24	0	797649..798140	+	163	121601727	nuoI	BARBAKC583_0786	-	NADH dehydrogenase subunit I
740	 35.59	0	798237..798857	+	206	121602205	nuoJ	BARBAKC583_0787	-	NADH dehydrogenase subunit J
741	 32.69	-1	798871..799179	+	102	121602201	nuoK	BARBAKC583_0788	-	NADH dehydrogenase (quinone), K subunit
742	 36.59	0	799186..801150	+	654	121602756	nuoL	BARBAKC583_0789	-	NADH dehydrogenase subunit L
743	 34.76	-1	801150..802619	+	489	121602023	nuoM	BARBAKC583_0790	-	NADH dehydrogenase subunit M
744	 33.33	-1	802632..804095	+	487	121602613	nuoN	BARBAKC583_0791	-	NADH dehydrogenase subunit N
745	 34.46	-1	804102..804902	+	266	121602388	-	BARBAKC583_0792	-	biotin-[acetyl-CoA-carboxylase] ligase
746	 38.40	0	804952..806628	+	558	121601638	-	BARBAKC583_0793	-	putative RNA-metabolising metallo-beta-lactamase
747	 38.54	0	806863..808188	+	441	121602198	proS	BARBAKC583_0794	-	prolyl-tRNA synthetase
748	 35.15	0	808200..809468	+	422	121601808	-	BARBAKC583_0795	-	ABC transporter, permease protein
749	 37.59	0	809468..810148	+	226	121602495	-	BARBAKC583_0796	-	ABC transporter, ATP-binding protein
750	 35.71	0	810225..810518	+	97	121602633	-	BARBAKC583_0797	-	hypothetical protein
751	 37.11	0	810524..814015	+	1163	121602625	mfd	BARBAKC583_0798	-	transcription-repair coupling factor
752	 36.91	0	816192..816806	+	204	121602309	-	BARBAKC583_0800	-	invasion associated locus B family protein
753	 31.88	-1	820035..821273	+	412	121602571	-	BARBAKC583_0802	-	N-acetylmuramoyl-l-alanine amidase family protein
754	 38.23	0	821436..823907	+	823	121601708	-	BARBAKC583_0803	-	penicillin-binding protein, 1A
755	 38.78	0	824125..825256	+	376	121602405	prfB	BARBAKC583_0804	-	peptide chain release factor 2
756	 36.71	0	825372..825845	-	157	121601658	-	BARBAKC583_0805	-	thioredoxin family protein
757	 34.69	-1	825929..827182	-	417	121602511	tyrS	BARBAKC583_0806	-	tyrosyl-tRNA synthetase
758	 21.93	-2	827288..827401	-	37	121602152	-	BARBAKC583_0807	-	hypothetical protein
759	 38.56	0	827553..828260	-	235	121602329	-	BARBAKC583_0808	-	hypothetical protein
760	 36.38	0	828438..829586	+	382	121601986	-	BARBAKC583_0809	-	aminotransferase, class V
761	 36.11	0	829744..831255	+	503	121602810	sufB	BARBAKC583_0810	-	cysteine desulfurase activator complex subunit SufB
762	 35.05	0	831314..832069	+	251	121602478	sufC	BARBAKC583_0811	-	FeS assembly ATPase SufC
763	 33.33	-1	832087..833352	+	421	121602832	sufD	BARBAKC583_0812	-	FeS assembly protein SufD
764	 36.79	0	833362..834606	+	414	121602390	sufS	BARBAKC583_0813	-	cysteine desulfurase SufS
765	 39.55	0	834599..835000	+	133	121601686	-	BARBAKC583_0814	-	FeS assembly SUF system protein
766	 34.32	-1	835542..836756	-	404	121601987	-	BARBAKC583_0816	-	2-octaprenyl-6-methoxyphenyl hydroxylase
767	 33.33	-1	836940..837701	+	253	121602841	pcs	BARBAKC583_0817	-	phosphatidylcholine synthase
768	 35.78	0	837809..838624	-	271	121602590	-	BARBAKC583_0818	-	metallo-beta-lactamase family protein
769	 35.14	0	838635..839408	-	257	121601870	-	BARBAKC583_0819	-	TatD family hydrolase
770	 37.76	0	839398..840957	-	519	121601643	metG	BARBAKC583_0820	-	methionyl-tRNA synthetase
771	 33.81	-1	841031..842074	-	347	121602540	holB	BARBAKC583_0821	-	DNA polymerase III subunit delta'
772	 35.05	0	842071..842712	-	213	121602268	tmk	BARBAKC583_0822	-	thymidylate kinase
773	 33.69	-1	842986..843831	-	281	121602144	-	BARBAKC583_0823	-	rare lipoprotein A
774	 36.80	0	844700..845536	-	278	121602698	-	BARBAKC583_0825	-	PP-loop family protein
775	 39.32	0	845801..846418	-	205	121602011	rpsD	BARBAKC583_0826	-	30S ribosomal protein S4
776	 34.19	-1	846598..847413	-	271	121602574	murI	BARBAKC583_0827	-	glutamate racemase
777	 37.20	0	847413..848240	-	275	121601814	-	BARBAKC583_0828	-	RNA methyltransferase
778	 38.15	0	848590..849420	+	276	121602358	map	BARBAKC583_0829	-	methionine aminopeptidase
779	 35.96	0	849438..850235	+	265	121602861	-	BARBAKC583_0830	-	RadC family DNA repair protein
780	 30.52	-2	850283..850495	-	70	121602164	-	BARBAKC583_0831	-	hypothetical protein
781	 37.60	0	850662..851435	-	257	121602635	-	BARBAKC583_0832	-	hydrolase, alpha/beta fold family protein
782	 30.52	-2	851439..851936	-	165	121601950	-	BARBAKC583_0833	-	hypothetical protein
783	 39.26	0	852038..852577	-	179	121601754	-	BARBAKC583_0834	-	cold-shock DNA-binding family protein
784	 39.46	0	853164..854648	-	494	121602404	gatA	BARBAKC583_0835	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
785	 37.15	0	854679..854966	-	95	121601899	gatC	BARBAKC583_0836	-	glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit
786	 34.98	0	855133..855618	+	161	121602720	-	BARBAKC583_0838	-	hypothetical protein
787	 37.64	0	855603..857228	-	541	121602440	-	BARBAKC583_0837	-	acyl-CoA dehydrogenase family protein
788	 38.92	0	857353..858318	+	321	121601978	pyrB	BARBAKC583_0839	-	aspartate carbamoyltransferase catalytic subunit
789	 38.81	0	858315..859610	+	431	121602852	-	BARBAKC583_0840	-	dihydroorotase
790	 33.02	-1	859628..860263	+	211	121602181	-	BARBAKC583_0841	-	hypothetical protein
791	 39.80	0	860256..861446	+	396	121602381	dprA	BARBAKC583_0842	-	DNA protecting protein DprA
792	 38.28	0	861827..864436	+	869	121601698	topA	BARBAKC583_0843	-	DNA topoisomerase I
793	 34.12	-1	864619..866664	+	681	121602334	rnr	BARBAKC583_0844	-	ribonuclease R
794	 31.84	-1	866944..867144	+	66	121601982	-	BARBAKC583_0845	-	hypothetical protein
795	 32.74	-1	868208..868375	+	55	121602423	rpmG	BARBAKC583_0847	-	50S ribosomal protein L33
796	 32.97	-1	868907..869461	+	184	121601780	-	BARBAKC583_0848	-	nuclease-like protein
797	 38.99	0	869508..870143	+	211	121602558	-	BARBAKC583_0849	-	hypothetical protein
798	 35.83	0	870164..870643	+	159	121601824	grp	BARBAKC583_0850	-	glutamate uptake regulatory protein Grp
799	 39.10	0	870687..871691	-	334	121602695	cobT	BARBAKC583_0851	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
800	 36.70	0	872024..873004	-	326	121602008	dusA	BARBAKC583_0852	-	tRNA-dihydrouridine synthase A
801	 34.36	-1	873371..875908	-	845	121602917	-	BARBAKC583_0853	-	sensor histidine kinase/reponse regulator
39.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.