IslandPathversion 1.0

IslandPath Analysis: Bartonella bacilliformis KC583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.00 STD DEV: 4.11
Bartonella bacilliformis KC583, complete genome - 1..1445021
1283 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
671	 45.42	+1	717862..718167	+	101	121602699	rpsN	BARBAKC583_0711	-	30S ribosomal protein S14
672	 38.60	0	718182..718580	+	132	121602134	rpsH	BARBAKC583_0712	-	30S ribosomal protein S8
673	 40.07	0	718619..719152	+	177	121602857	rplF	BARBAKC583_0713	-	50S ribosomal protein L6
674	 42.15	0	719165..719527	+	120	121601954	rplR	BARBAKC583_0714	-	50S ribosomal protein L18
675	 43.51	+1	719639..720208	+	189	121602355	rpsE	BARBAKC583_0715	-	30S ribosomal protein S5
676	 38.65	0	720241..720447	+	68	121602739	rpmD	BARBAKC583_0716	-	50S ribosomal protein L30
677	 38.92	0	720475..720939	+	154	121602515	rplO	BARBAKC583_0717	-	50S ribosomal protein L15
678	 36.82	0	721068..722414	+	448	121602796	secY	BARBAKC583_0718	-	preprotein translocase subunit SecY
679	 38.00	0	722411..722989	+	192	121602066	adk	BARBAKC583_0719	-	adenylate kinase
680	 45.80	+1	723176..723544	+	122	121602910	rpsM	BARBAKC583_0720	-	30S ribosomal protein S13
681	 47.18	+1	723667..724056	+	129	121602190	rpsK	BARBAKC583_0721	-	30S ribosomal protein S11
682	 37.97	0	724147..725160	+	337	121601834	rpoA	BARBAKC583_0722	-	DNA-directed RNA polymerase subunit alpha
683	 42.96	0	725185..725610	+	141	121601649	rplQ	BARBAKC583_0723	-	50S ribosomal protein L17
684	 36.27	0	725791..727185	+	464	121602357	-	BARBAKC583_0724	-	putative protease do
685	 40.98	0	727195..728514	+	439	121602885	-	BARBAKC583_0726	-	recombination factor protein RarA
686	 29.48	-2	728485..728847	-	120	121601773	-	BARBAKC583_0725	-	hypothetical protein
687	 40.42	0	728971..730014	+	347	121602844	recA	BARBAKC583_0727	-	recombinase A
688	 38.97	0	730206..732866	+	886	121601991	alaS	BARBAKC583_0728	-	alanyl-tRNA synthetase
689	 37.30	0	732964..734751	-	595	121602048	ndvA	BARBAKC583_0729	-	cyclic beta-1,2-glucan ABC transporter
690	 41.06	0	734949..735932	+	327	121602476	-	BARBAKC583_0730	-	RluA family pseudouridine synthase
691	 38.30	0	736321..737106	+	261	121602261	-	BARBAKC583_0731	-	ATP12 chaperone family protein
692	 31.50	-1	737136..737681	-	181	121602637	-	BARBAKC583_0732	-	hypothetical protein
693	 38.94	0	737835..739244	-	469	121602001	glnA	BARBAKC583_0733	-	glutamine synthetase, type I
694	 40.14	0	739902..742796	-	964	121602160	uvrA	BARBAKC583_0735	-	excinuclease ABC subunit A
695	 37.45	0	742995..743528	+	177	121601719	ssb	BARBAKC583_0736	-	single-stranded DNA-binding protein
696	 42.23	0	744012..746798	+	928	121602587	gyrA	BARBAKC583_0737	-	DNA gyrase subunit A
697	 39.61	0	746801..747310	+	169	121601709	coaD	BARBAKC583_0738	-	phosphopantetheine adenylyltransferase
698	 36.98	0	747325..747900	+	191	121602490	-	BARBAKC583_0739	-	peptidyl-prolyl cis-trans isomerase B
699	 38.40	0	747917..748429	+	170	121601934	-	BARBAKC583_0740	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
700	 43.30	+1	748730..749863	+	377	121602338	tgt	BARBAKC583_0741	-	queuine tRNA-ribosyltransferase
701	 36.63	0	750669..752093	-	474	121602416	-	BARBAKC583_0742	-	major facilitator transporter
702	 37.94	0	752211..753425	-	404	121602400	-	BARBAKC583_0743	-	isocitrate dehydrogenase
703	 32.71	-1	753707..754348	+	213	121601707	-	BARBAKC583_0744	-	hypothetical protein
704	 42.12	0	755316..756305	+	329	121602602	glpX	BARBAKC583_0746	-	fructose 1,6-bisphosphatase II
705	 36.31	0	756404..757510	-	368	121602725	ilvE	BARBAKC583_0747	-	branched-chain amino acid aminotransferase
706	 33.41	-1	758037..760544	-	835	121602858	-	BARBAKC583_0748	-	sporulation and cell division repeat-containing protein
707	 36.69	0	760680..762437	-	585	121602184	argS	BARBAKC583_0749	-	arginyl-tRNA synthetase
708	 38.60	0	762468..763664	-	398	121602687	-	BARBAKC583_0750	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
709	 35.49	0	763771..764094	+	107	121601807	-	BARBAKC583_0751	-	iron-sulfur cluster assembly accessory protein
710	 36.86	0	764155..765117	+	320	121602335	-	BARBAKC583_0752	-	hypothetical protein
711	 34.13	-1	765167..765919	+	250	121601918	-	BARBAKC583_0753	-	putative cytochrome c-type biogenesis protein
712	 36.22	0	765970..767319	+	449	121601801	-	BARBAKC583_0754	-	putative UDP-N-acetylglucosamine pyrophosphorylase
713	 37.83	0	767497..769320	+	607	121602560	glmS	BARBAKC583_0755	-	D-fructose-6-phosphate amidotransferase
714	 40.49	0	769544..771652	-	702	121602903	recG	BARBAKC583_0756	-	ATP-dependent DNA helicase RecG
715	 36.74	0	771789..773549	-	586	121602208	-	BARBAKC583_0757	-	putative microcin immunity protein
716	 40.19	0	773945..775885	-	646	121601964	-	BARBAKC583_0758	-	hypothetical protein
717	 26.32	-2	776209..776322	+	37	121602450	-	BARBAKC583_0759	-	hypothetical protein
718	 39.67	0	776689..778029	-	446	121602177	accC	BARBAKC583_0761	-	acetyl-CoA carboxylase biotin carboxylase subunit
719	 39.54	0	778044..778526	-	160	121602597	accB	BARBAKC583_0762	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
720	 29.70	-2	778743..779540	-	265	121602002	-	BARBAKC583_0763	-	thioredoxin domain-containing protein
721	 36.93	0	779961..780572	-	203	121602889	purN	BARBAKC583_0764	-	phosphoribosylglycinamide formyltransferase
722	 39.04	0	780569..781654	-	361	121602342	purM	BARBAKC583_0765	-	phosphoribosylaminoimidazole synthetase
723	 34.98	0	781822..783036	+	404	121602761	-	BARBAKC583_0766	-	hypothetical protein
724	 35.80	0	783033..783722	+	229	121602210	-	BARBAKC583_0767	-	hypothetical protein
725	 38.89	0	784228..784533	+	101	121601871	-	BARBAKC583_0769	-	putative NADH dehydrogenase (quinone) subunit
726	 37.36	0	784918..785190	-	90	121602740	-	BARBAKC583_0771	-	hypothetical protein
727	 41.27	0	785717..785842	+	41	121601640	-	BARBAKC583_0772	-	hypothetical protein
728	 43.69	+1	785873..786094	+	73	121602760	-	BARBAKC583_0773	-	hypothetical protein
729	 39.33	0	786307..788241	-	644	121601751	-	BARBAKC583_0774	-	hypothetical protein
730	 30.08	-2	788548..788670	+	40	121602314	-	BARBAKC583_0775	-	hypothetical protein
731	 33.61	-1	789462..789827	+	121	121602445	nuoA	BARBAKC583_0778	-	NADH dehydrogenase subunit A
732	 41.75	0	789818..790399	+	193	121602032	nuoB	BARBAKC583_0779	-	NADH dehydrogenase subunit B
733	 38.03	0	790409..791026	+	205	121602302	nuoC	BARBAKC583_0780	-	NADH dehydrogenase subunit C
734	 40.89	0	791112..792302	+	396	121601914	nuoD	BARBAKC583_0781	-	NADH dehydrogenase subunit D
735	 36.87	0	792302..792979	+	225	121602159	nuoE	BARBAKC583_0782	-	NADH dehydrogenase subunit E
736	 41.06	0	793123..794430	+	435	121601753	nuoF	BARBAKC583_0783	-	NADH dehydrogenase I subunit F
737	 39.47	0	794495..796564	+	689	121602038	nuoG	BARBAKC583_0784	-	NADH dehydrogenase subunit G
738	 37.44	0	796589..797635	+	348	121602469	nuoH	BARBAKC583_0785	-	NADH dehydrogenase subunit H
739	 40.24	0	797649..798140	+	163	121601727	nuoI	BARBAKC583_0786	-	NADH dehydrogenase subunit I
740	 35.59	0	798237..798857	+	206	121602205	nuoJ	BARBAKC583_0787	-	NADH dehydrogenase subunit J
741	 32.69	-1	798871..799179	+	102	121602201	nuoK	BARBAKC583_0788	-	NADH dehydrogenase (quinone), K subunit
742	 36.59	0	799186..801150	+	654	121602756	nuoL	BARBAKC583_0789	-	NADH dehydrogenase subunit L
743	 34.76	-1	801150..802619	+	489	121602023	nuoM	BARBAKC583_0790	-	NADH dehydrogenase subunit M
744	 33.33	-1	802632..804095	+	487	121602613	nuoN	BARBAKC583_0791	-	NADH dehydrogenase subunit N
745	 34.46	-1	804102..804902	+	266	121602388	-	BARBAKC583_0792	-	biotin-[acetyl-CoA-carboxylase] ligase
746	 38.40	0	804952..806628	+	558	121601638	-	BARBAKC583_0793	-	putative RNA-metabolising metallo-beta-lactamase
747	 38.54	0	806863..808188	+	441	121602198	proS	BARBAKC583_0794	-	prolyl-tRNA synthetase
748	 35.15	0	808200..809468	+	422	121601808	-	BARBAKC583_0795	-	ABC transporter, permease protein
749	 37.59	0	809468..810148	+	226	121602495	-	BARBAKC583_0796	-	ABC transporter, ATP-binding protein
750	 35.71	0	810225..810518	+	97	121602633	-	BARBAKC583_0797	-	hypothetical protein
751	 37.11	0	810524..814015	+	1163	121602625	mfd	BARBAKC583_0798	-	transcription-repair coupling factor
752	 36.91	0	816192..816806	+	204	121602309	-	BARBAKC583_0800	-	invasion associated locus B family protein
753	 31.88	-1	820035..821273	+	412	121602571	-	BARBAKC583_0802	-	N-acetylmuramoyl-l-alanine amidase family protein
754	 38.23	0	821436..823907	+	823	121601708	-	BARBAKC583_0803	-	penicillin-binding protein, 1A
755	 38.78	0	824125..825256	+	376	121602405	prfB	BARBAKC583_0804	-	peptide chain release factor 2
756	 36.71	0	825372..825845	-	157	121601658	-	BARBAKC583_0805	-	thioredoxin family protein
757	 34.69	-1	825929..827182	-	417	121602511	tyrS	BARBAKC583_0806	-	tyrosyl-tRNA synthetase
758	 21.93	-2	827288..827401	-	37	121602152	-	BARBAKC583_0807	-	hypothetical protein
759	 38.56	0	827553..828260	-	235	121602329	-	BARBAKC583_0808	-	hypothetical protein
760	 36.38	0	828438..829586	+	382	121601986	-	BARBAKC583_0809	-	aminotransferase, class V
761	 36.11	0	829744..831255	+	503	121602810	sufB	BARBAKC583_0810	-	cysteine desulfurase activator complex subunit SufB
762	 35.05	0	831314..832069	+	251	121602478	sufC	BARBAKC583_0811	-	FeS assembly ATPase SufC
763	 33.33	-1	832087..833352	+	421	121602832	sufD	BARBAKC583_0812	-	FeS assembly protein SufD
764	 36.79	0	833362..834606	+	414	121602390	sufS	BARBAKC583_0813	-	cysteine desulfurase SufS
765	 39.55	0	834599..835000	+	133	121601686	-	BARBAKC583_0814	-	FeS assembly SUF system protein
766	 34.32	-1	835542..836756	-	404	121601987	-	BARBAKC583_0816	-	2-octaprenyl-6-methoxyphenyl hydroxylase
767	 33.33	-1	836940..837701	+	253	121602841	pcs	BARBAKC583_0817	-	phosphatidylcholine synthase
768	 35.78	0	837809..838624	-	271	121602590	-	BARBAKC583_0818	-	metallo-beta-lactamase family protein
769	 35.14	0	838635..839408	-	257	121601870	-	BARBAKC583_0819	-	TatD family hydrolase
770	 37.76	0	839398..840957	-	519	121601643	metG	BARBAKC583_0820	-	methionyl-tRNA synthetase
39.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.