IslandPathversion 1.0

IslandPath Analysis: Bartonella bacilliformis KC583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.00 STD DEV: 4.11
Bartonella bacilliformis KC583, complete genome - 1..1445021
1283 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
571	 40.03	0	618674..619375	+	233	121602568	rpiA	BARBAKC583_0602	-	ribose-5-phosphate isomerase A
572	 35.17	0	619437..619979	+	180	121601821	-	BARBAKC583_0603	-	hypothetical protein
573	 38.10	0	620181..621566	+	461	121602043	gor	BARBAKC583_0604	-	glutathione reductase
574	 36.34	0	621641..623005	+	454	121602337	-	BARBAKC583_0605	-	3-deoxy-7-phosphoheptulonate synthase
575	 37.43	0	623117..624799	+	560	121601772	nadE	BARBAKC583_0606	-	NAD synthetase
576	 36.32	0	624810..626180	+	456	121602166	gltX2	BARBAKC583_0607	-	glutamyl-tRNA synthetase
577	 38.08	0	626256..627644	-	462	121602645	-	BARBAKC583_0608	-	DEAD/DEAH box helicase domain-containing protein
578	 38.50	0	627797..628570	-	257	121602714	ppnK	BARBAKC583_0609	-	inorganic polyphosphate/ATP-NAD kinase
579	 37.19	0	629441..629803	-	120	121602179	-	BARBAKC583_0612	-	response regulator
580	 26.32	-2	629983..630096	+	37	121602579	-	BARBAKC583_0613	-	hypothetical protein
581	 35.05	0	630537..631001	+	154	121602064	-	BARBAKC583_0614	-	Hsp20/alpha crystallin family protein
582	 38.61	0	631806..632165	+	119	121601819	-	BARBAKC583_0616	-	putative FeS assembly scaffold SufA
583	 35.54	0	632257..633162	-	301	121602578	-	BARBAKC583_0617	-	lipid A biosynthesis lauroyl acyltransferase
584	 39.75	0	633193..634221	-	342	121601660	-	BARBAKC583_0618	-	zinc-binding dehydrogenase family oxidoreductase
585	 39.41	0	634249..635547	-	432	121602379	-	BARBAKC583_0619	-	3-oxoacyl-(acyl carrier protein) synthase II
586	 35.09	0	635563..636132	-	189	121601943	-	BARBAKC583_0620	-	3-oxoacyl-(ACP) synthase III
587	 32.63	-1	636143..636427	-	94	121602700	-	BARBAKC583_0621	-	acyl carrier protein
588	 39.67	0	636621..638954	-	777	121601936	dme	BARBAKC583_0622	-	malic enzyme
589	 34.84	-1	639489..644120	-	1543	121602547	-	BARBAKC583_0623	-	hypothetical protein
590	 36.25	0	644989..645228	+	79	121601695	hfq	BARBAKC583_0624	-	RNA-binding protein Hfq
591	 35.08	0	645286..646659	+	457	121602372	hflX	BARBAKC583_0625	-	GTP-binding proten HflX
592	 37.23	0	647530..648606	+	358	121602840	-	BARBAKC583_0627	-	cytochrome oxidase assembly protein
593	 37.50	0	648627..649562	-	311	121602249	argC	BARBAKC583_0628	-	N-acetyl-gamma-glutamyl-phosphate reductase
594	 38.49	0	649870..651168	+	432	121602524	glyA	BARBAKC583_0629	-	serine hydroxymethyltransferase
595	 40.37	0	651194..651676	+	160	121602154	nrdR	BARBAKC583_0630	-	transcriptional regulator NrdR
596	 38.40	0	651669..652793	+	374	121602090	ribD	BARBAKC583_0631	-	riboflavin biosynthesis protein RibD
597	 36.89	0	652775..653392	+	205	121602297	ribE	BARBAKC583_0632	-	riboflavin synthase subunit alpha
598	 36.38	0	653477..653935	+	152	121601962	ribH	BARBAKC583_0633	-	riboflavin synthase subunit beta
599	 38.28	0	653939..654403	+	154	121602835	nusB	BARBAKC583_0634	-	transcription antitermination protein NusB
600	 33.33	-1	654480..654836	-	118	121602304	-	BARBAKC583_0635	-	SmpA/OmlA family outer membrane protein
601	 29.93	-2	655163..655720	+	185	121602659	-	BARBAKC583_0636	-	hypothetical protein
602	 37.54	0	655867..656937	+	356	121602272	plsX	BARBAKC583_0637	-	putative glycerol-3-phosphate acyltransferase PlsX
603	 39.90	0	656987..657961	+	324	121602417	fabH	BARBAKC583_0638	-	3-oxoacyl-(acyl carrier protein) synthase III
604	 40.38	0	658038..658349	+	103	121602866	ihfA	BARBAKC583_0639	-	integration host factor subunit alpha
605	 38.26	0	658534..659040	+	168	121602593	-	BARBAKC583_0640	-	MerR family transcriptional regulator
606	 38.75	0	659071..661047	-	658	121601812	thrS	BARBAKC583_0641	-	threonyl-tRNA synthetase
607	 40.40	0	661172..661525	-	117	121602223	-	BARBAKC583_0642	-	hypothetical protein
608	 33.79	-1	661518..661955	-	145	121602629	-	BARBAKC583_0643	-	hypothetical protein
609	 38.65	0	662083..662703	+	206	121601665	folE	BARBAKC583_0644	-	GTP cyclohydrolase I
610	 36.39	0	663087..664298	+	403	121602825	-	BARBAKC583_0646	-	putative lipoprotein
611	 31.81	-1	664431..664955	+	174	121601828	-	BARBAKC583_0647	-	hypothetical protein
612	 38.75	0	665209..667128	-	639	121602330	-	BARBAKC583_0648	-	hypothetical protein
613	 39.70	0	668413..669087	+	224	121601678	-	BARBAKC583_0651	-	putative protein-L-isoaspartate O-methyltransferase
614	 40.48	0	669141..670427	+	428	121602589	-	BARBAKC583_0652	-	TolC family type I secretion outer membrane protein
615	 37.67	0	670610..671185	+	191	121601868	-	BARBAKC583_0653	-	hypothetical protein
616	 39.53	0	671349..674075	+	908	121602738	valS	BARBAKC583_0654	-	valyl-tRNA synthetase
617	 37.82	0	674643..675377	-	244	121601830	gltL1	BARBAKC583_0655	-	glutamate/aspartate ABC transporter, ATP-binding protein
618	 34.87	-1	675401..676117	-	238	121602538	gltK1	BARBAKC583_0656	-	glutamate/aspartate ABC transporter, permease protein GltK
619	 35.72	0	676119..676871	-	250	121601784	gltJ1	BARBAKC583_0657	-	glutamate/aspartate ABC transporter, permease protein GltJ
620	 36.73	0	677017..678399	-	460	121602131	-	BARBAKC583_0658	-	putative glutamate/aspartate ABC transporter, permease protein/periplasmic glutamate/aspartate-binding protein
621	 35.86	0	678545..679453	-	302	121602735	gltI1	BARBAKC583_0659	-	glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein
622	 35.73	0	679571..680362	-	263	121602003	xth2	BARBAKC583_0660	-	exodeoxyribonuclease III
623	 45.97	+1	680844..681215	+	123	121602315	rpsL	BARBAKC583_0661	-	30S ribosomal protein S12
624	 45.01	+1	681247..681717	+	156	121601921	rpsG1	BARBAKC583_0662	-	30S ribosomal protein S7
625	 41.87	0	681747..683831	+	694	121602191	fusA1	BARBAKC583_0663	-	elongation factor G
626	 44.98	+1	683896..685071	+	391	121601791	tuf2	BARBAKC583_0664	-	elongation factor Tu
627	 46.28	+1	685140..685448	+	102	121602082	rpsJ1	BARBAKC583_0665	-	ribosomal protein S10
628	 43.86	+1	685476..686216	+	246	121602668	rplC	BARBAKC583_0666	-	50S ribosomal protein L3
629	 40.10	0	686216..686836	+	206	121602068	rplD	BARBAKC583_0667	-	50S ribosomal protein L4
630	 35.71	0	686833..687126	+	97	121602627	rplW	BARBAKC583_0668	-	50S ribosomal protein L23
631	 44.00	+1	687141..687974	+	277	121602559	rplB	BARBAKC583_0669	-	50S ribosomal protein L2
632	 43.37	+1	687990..688268	+	92	121601820	rpsS	BARBAKC583_0670	-	30S ribosomal protein S19
633	 41.28	0	688271..688660	+	129	121601656	rplV	BARBAKC583_0671	-	50S ribosomal protein L22
634	 44.02	+1	688660..689370	+	236	121602523	rpsC	BARBAKC583_0672	-	30S ribosomal protein S3
635	 46.62	+1	689407..689820	+	137	121602176	rplP	BARBAKC583_0673	-	50S ribosomal protein L16
636	 37.81	0	689833..690033	+	66	121602387	rpmC1	BARBAKC583_0674	-	50S ribosomal protein L29
637	 40.74	0	690045..690287	+	80	121602639	rpsQ	BARBAKC583_0675	-	30S ribosomal protein S17
638	 46.07	+1	690436..690804	+	122	121602071	rplN	BARBAKC583_0676	-	50S ribosomal protein L14
639	 39.68	0	690817..691131	+	104	121601949	rplX	BARBAKC583_0677	-	50S ribosomal protein L24
640	 39.63	0	691124..691504	+	126	121602514	rplE1	BARBAKC583_0678	-	ribosomal protein L5
641	 37.06	0	691542..692051	+	169	121602055	-	BARBAKC583_0679	-	hypothetical protein
642	 31.81	-1	692184..692708	+	174	121602681	-	BARBAKC583_0680	-	hypothetical protein
643	 38.80	0	692962..694881	-	639	121602256	-	BARBAKC583_0681	-	hypothetical protein
644	 39.70	0	696166..696840	+	224	121601738	-	BARBAKC583_0684	-	putative protein-L-isoaspartate O-methyltransferase
645	 40.39	0	696894..698111	+	405	121602288	-	BARBAKC583_0685	-	TolC family type I secretion outer membrane protein
646	 37.67	0	698294..698869	+	191	121601963	-	BARBAKC583_0686	-	hypothetical protein
647	 39.53	0	699033..701759	+	908	121602503	valS	BARBAKC583_0687	-	valyl-tRNA synthetase
648	 37.82	0	702327..703061	-	244	121602087	gltL2	BARBAKC583_0688	-	glutamate/aspartate ABC transporter, ATP-binding protein
649	 34.87	-1	703085..703801	-	238	121602648	gltK2	BARBAKC583_0689	-	glutamate/aspartate ABC transporter, permease protein GltK
650	 35.72	0	703803..704555	-	250	121602217	gltJ2	BARBAKC583_0690	-	glutamate/aspartate ABC transporter, permease protein GltJ
651	 35.86	0	704701..705609	-	302	121602769	gltI2	BARBAKC583_0691	-	glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein
652	 35.73	0	705727..706518	-	263	121602536	xth3	BARBAKC583_0692	-	exodeoxyribonuclease III
653	 45.97	+1	707000..707371	+	123	121601641	rpsL	BARBAKC583_0693	-	30S ribosomal protein S12
654	 45.01	+1	707403..707873	+	156	121602421	rpsG2	BARBAKC583_0694	-	30S ribosomal protein S7
655	 41.87	0	707903..709987	+	694	121602185	fusA2	BARBAKC583_0695	-	elongation factor G
656	 44.98	+1	710052..711227	+	391	121602898	tuf3	BARBAKC583_0696	-	elongation factor Tu
657	 46.28	+1	711296..711604	+	102	121602045	rpsJ2	BARBAKC583_0697	-	ribosomal protein S10
658	 43.86	+1	711632..712372	+	246	121601833	rplC	BARBAKC583_0698	-	50S ribosomal protein L3
659	 40.10	0	712372..712992	+	206	121602137	rplD	BARBAKC583_0699	-	50S ribosomal protein L4
660	 35.71	0	712989..713282	+	97	121602705	rplW	BARBAKC583_0700	-	50S ribosomal protein L23
661	 44.00	+1	713297..714130	+	277	121601972	rplB	BARBAKC583_0701	-	50S ribosomal protein L2
662	 43.37	+1	714146..714424	+	92	121602439	rpsS	BARBAKC583_0702	-	30S ribosomal protein S19
663	 41.28	0	714427..714816	+	129	121602710	rplV	BARBAKC583_0703	-	50S ribosomal protein L22
664	 44.02	+1	714816..715526	+	236	121602435	rpsC	BARBAKC583_0704	-	30S ribosomal protein S3
665	 46.62	+1	715563..715976	+	137	121601897	rplP	BARBAKC583_0705	-	50S ribosomal protein L16
666	 37.81	0	715989..716189	+	66	121602218	rpmC2	BARBAKC583_0706	-	50S ribosomal protein L29
667	 40.74	0	716201..716443	+	80	121602430	rpsQ	BARBAKC583_0707	-	30S ribosomal protein S17
668	 46.07	+1	716592..716960	+	122	121602061	rplN	BARBAKC583_0708	-	50S ribosomal protein L14
669	 39.68	0	716973..717287	+	104	121601924	rplX	BARBAKC583_0709	-	50S ribosomal protein L24
670	 39.07	0	717280..717837	+	185	121601971	rplE	BARBAKC583_0710	-	50S ribosomal protein L5
39.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.