IslandPathversion 1.0

IslandPath Analysis: Bartonella bacilliformis KC583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.00 STD DEV: 4.11
Bartonella bacilliformis KC583, complete genome - 1..1445021
1283 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
530	 37.59	0	569416..569814	+	132	121602347	-	BARBAKC583_0556	-	hypothetical protein
531	 36.51	0	569989..570492	+	167	121601680	-	BARBAKC583_0557	-	hypothetical protein
532	 33.75	-1	570600..571322	+	240	121601865	-	BARBAKC583_0559	-	S54 family peptidase
533	 40.91	0	571312..572142	-	276	121602409	-	BARBAKC583_0558	-	RNA methyltransferase
534	 44.68	+1	572465..572605	+	46	121601787	-	BARBAKC583_0562	-	hypothetical protein
535	 44.90	+1	572688..573863	+	391	121602575	tuf1	BARBAKC583_0563	-	elongation factor Tu
536	 38.73	0	574217..574420	+	67	121602263	secE	BARBAKC583_0565	-	preprotein translocase subunit SecE
537	 40.11	0	574441..574971	+	176	121602807	nusG	BARBAKC583_0566	-	transcription antitermination protein NusG
538	 41.49	0	575124..575552	+	142	121602562	rplK	BARBAKC583_0567	-	50S ribosomal protein L11
539	 41.06	0	575557..576255	+	232	121601687	rplA	BARBAKC583_0568	-	50S ribosomal protein L1
540	 43.74	+1	576612..577130	+	172	121602049	rplJ	BARBAKC583_0569	-	50S ribosomal protein L10
541	 41.40	0	577236..577607	+	123	121601836	rplL	BARBAKC583_0570	-	50S ribosomal protein L7/L12
542	 40.39	0	577891..582042	+	1383	121602831	rpoB	BARBAKC583_0571	-	DNA-directed RNA polymerase subunit beta
543	 40.69	0	582204..586415	+	1403	121602241	rpoC	BARBAKC583_0572	-	DNA-directed RNA polymerase subunit beta'
544	 40.03	0	586776..587462	+	228	121601888	-	BARBAKC583_0573	-	nitroreductase family protein
545	 34.21	-1	587625..587738	+	37	121602883	-	BARBAKC583_0574	-	hypothetical protein
546	 42.64	0	589606..589734	+	42	121602025	-	BARBAKC583_0576	-	hypothetical protein
547	 37.79	0	589946..591292	-	448	121602290	-	BARBAKC583_0577	-	D-alanyl-D-alanine carboxypeptidase
548	 33.33	-1	591619..591897	+	92	121601730	clpS	BARBAKC583_0578	-	ATP-dependent Clp protease adaptor protein ClpS
549	 38.66	0	591904..594270	+	788	121602591	clpA	BARBAKC583_0580	-	ATP-dependent Clp protease ATP-binding subunit ClpA
550	 39.72	0	594267..594689	-	140	121602649	-	BARBAKC583_0579	-	histidine triad domain-containing protein
551	 38.06	0	594775..595239	-	154	121601997	-	BARBAKC583_0581	-	endoribonuclease L-PSP
552	 35.78	0	595376..596191	+	271	121602723	-	BARBAKC583_0582	-	hypothetical protein
553	 41.79	0	596350..597165	+	271	121602757	rpsB	BARBAKC583_0583	-	30S ribosomal protein S2
554	 41.67	0	597285..598208	+	307	121602519	tsf	BARBAKC583_0584	-	elongation factor Ts
555	 39.17	0	598348..599067	+	239	121601644	pyrH	BARBAKC583_0585	-	uridylate kinase
556	 40.29	0	599104..599664	+	186	121602369	frr	BARBAKC583_0586	-	ribosome recycling factor
557	 33.82	-1	600413..601231	+	272	121602084	cdsA	BARBAKC583_0587	-	phosphatidate cytidylyltransferase
558	 37.51	0	602564..604960	+	798	121602491	-	BARBAKC583_0589	-	OMP85 family outer membrane protein
559	 41.43	0	605027..606076	+	349	121601880	lpxD	BARBAKC583_0590	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
560	 36.13	0	606078..606542	+	154	121602572	fabZ	BARBAKC583_0591	-	(3R)-hydroxymyristoyl-ACP dehydratase
561	 39.15	0	606568..607392	+	274	121601970	lpxA	BARBAKC583_0592	-	UDP-N-acetylglucosamine acyltransferase
562	 38.72	0	607395..608267	+	290	121602728	-	BARBAKC583_0593	-	hypothetical protein
563	 36.96	0	608257..609441	+	394	121602145	lpxB	BARBAKC583_0594	-	lipid-A-disaccharide synthase
564	 35.00	0	609473..610252	-	259	121602878	-	BARBAKC583_0595	-	amino acid ABC transporter, ATP-binding protein
565	 33.47	-1	610332..611039	-	235	121602407	-	BARBAKC583_0596	-	amino acid ABC transporter, permease protein
566	 33.61	-1	611036..611758	-	240	121601743	-	BARBAKC583_0597	-	amino acid ABC transporter, permease protein
567	 32.16	-1	611817..612584	-	255	121602328	-	BARBAKC583_0598	-	amino acid ABC transporter, periplasmic amino acid-binding protein
568	 38.75	0	612955..614247	-	430	121602472	gltA	BARBAKC583_0599	-	type II citrate synthase
569	 40.11	0	614495..615925	-	476	121601941	gltX	BARBAKC583_0600	-	glutamyl-tRNA synthetase
570	 34.12	-1	616042..618315	+	757	121601648	-	BARBAKC583_0601	-	competence protein
571	 40.03	0	618674..619375	+	233	121602568	rpiA	BARBAKC583_0602	-	ribose-5-phosphate isomerase A
572	 35.17	0	619437..619979	+	180	121601821	-	BARBAKC583_0603	-	hypothetical protein
573	 38.10	0	620181..621566	+	461	121602043	gor	BARBAKC583_0604	-	glutathione reductase
574	 36.34	0	621641..623005	+	454	121602337	-	BARBAKC583_0605	-	3-deoxy-7-phosphoheptulonate synthase
575	 37.43	0	623117..624799	+	560	121601772	nadE	BARBAKC583_0606	-	NAD synthetase
576	 36.32	0	624810..626180	+	456	121602166	gltX2	BARBAKC583_0607	-	glutamyl-tRNA synthetase
577	 38.08	0	626256..627644	-	462	121602645	-	BARBAKC583_0608	-	DEAD/DEAH box helicase domain-containing protein
578	 38.50	0	627797..628570	-	257	121602714	ppnK	BARBAKC583_0609	-	inorganic polyphosphate/ATP-NAD kinase
579	 37.19	0	629441..629803	-	120	121602179	-	BARBAKC583_0612	-	response regulator
580	 26.32	-2	629983..630096	+	37	121602579	-	BARBAKC583_0613	-	hypothetical protein
581	 35.05	0	630537..631001	+	154	121602064	-	BARBAKC583_0614	-	Hsp20/alpha crystallin family protein
582	 38.61	0	631806..632165	+	119	121601819	-	BARBAKC583_0616	-	putative FeS assembly scaffold SufA
583	 35.54	0	632257..633162	-	301	121602578	-	BARBAKC583_0617	-	lipid A biosynthesis lauroyl acyltransferase
584	 39.75	0	633193..634221	-	342	121601660	-	BARBAKC583_0618	-	zinc-binding dehydrogenase family oxidoreductase
585	 39.41	0	634249..635547	-	432	121602379	-	BARBAKC583_0619	-	3-oxoacyl-(acyl carrier protein) synthase II
586	 35.09	0	635563..636132	-	189	121601943	-	BARBAKC583_0620	-	3-oxoacyl-(ACP) synthase III
587	 32.63	-1	636143..636427	-	94	121602700	-	BARBAKC583_0621	-	acyl carrier protein
588	 39.67	0	636621..638954	-	777	121601936	dme	BARBAKC583_0622	-	malic enzyme
589	 34.84	-1	639489..644120	-	1543	121602547	-	BARBAKC583_0623	-	hypothetical protein
590	 36.25	0	644989..645228	+	79	121601695	hfq	BARBAKC583_0624	-	RNA-binding protein Hfq
591	 35.08	0	645286..646659	+	457	121602372	hflX	BARBAKC583_0625	-	GTP-binding proten HflX
592	 37.23	0	647530..648606	+	358	121602840	-	BARBAKC583_0627	-	cytochrome oxidase assembly protein
593	 37.50	0	648627..649562	-	311	121602249	argC	BARBAKC583_0628	-	N-acetyl-gamma-glutamyl-phosphate reductase
594	 38.49	0	649870..651168	+	432	121602524	glyA	BARBAKC583_0629	-	serine hydroxymethyltransferase
595	 40.37	0	651194..651676	+	160	121602154	nrdR	BARBAKC583_0630	-	transcriptional regulator NrdR
596	 38.40	0	651669..652793	+	374	121602090	ribD	BARBAKC583_0631	-	riboflavin biosynthesis protein RibD
597	 36.89	0	652775..653392	+	205	121602297	ribE	BARBAKC583_0632	-	riboflavin synthase subunit alpha
598	 36.38	0	653477..653935	+	152	121601962	ribH	BARBAKC583_0633	-	riboflavin synthase subunit beta
599	 38.28	0	653939..654403	+	154	121602835	nusB	BARBAKC583_0634	-	transcription antitermination protein NusB
600	 33.33	-1	654480..654836	-	118	121602304	-	BARBAKC583_0635	-	SmpA/OmlA family outer membrane protein
601	 29.93	-2	655163..655720	+	185	121602659	-	BARBAKC583_0636	-	hypothetical protein
602	 37.54	0	655867..656937	+	356	121602272	plsX	BARBAKC583_0637	-	putative glycerol-3-phosphate acyltransferase PlsX
603	 39.90	0	656987..657961	+	324	121602417	fabH	BARBAKC583_0638	-	3-oxoacyl-(acyl carrier protein) synthase III
604	 40.38	0	658038..658349	+	103	121602866	ihfA	BARBAKC583_0639	-	integration host factor subunit alpha
605	 38.26	0	658534..659040	+	168	121602593	-	BARBAKC583_0640	-	MerR family transcriptional regulator
606	 38.75	0	659071..661047	-	658	121601812	thrS	BARBAKC583_0641	-	threonyl-tRNA synthetase
607	 40.40	0	661172..661525	-	117	121602223	-	BARBAKC583_0642	-	hypothetical protein
608	 33.79	-1	661518..661955	-	145	121602629	-	BARBAKC583_0643	-	hypothetical protein
609	 38.65	0	662083..662703	+	206	121601665	folE	BARBAKC583_0644	-	GTP cyclohydrolase I
610	 36.39	0	663087..664298	+	403	121602825	-	BARBAKC583_0646	-	putative lipoprotein
611	 31.81	-1	664431..664955	+	174	121601828	-	BARBAKC583_0647	-	hypothetical protein
612	 38.75	0	665209..667128	-	639	121602330	-	BARBAKC583_0648	-	hypothetical protein
613	 39.70	0	668413..669087	+	224	121601678	-	BARBAKC583_0651	-	putative protein-L-isoaspartate O-methyltransferase
614	 40.48	0	669141..670427	+	428	121602589	-	BARBAKC583_0652	-	TolC family type I secretion outer membrane protein
615	 37.67	0	670610..671185	+	191	121601868	-	BARBAKC583_0653	-	hypothetical protein
616	 39.53	0	671349..674075	+	908	121602738	valS	BARBAKC583_0654	-	valyl-tRNA synthetase
617	 37.82	0	674643..675377	-	244	121601830	gltL1	BARBAKC583_0655	-	glutamate/aspartate ABC transporter, ATP-binding protein
618	 34.87	-1	675401..676117	-	238	121602538	gltK1	BARBAKC583_0656	-	glutamate/aspartate ABC transporter, permease protein GltK
619	 35.72	0	676119..676871	-	250	121601784	gltJ1	BARBAKC583_0657	-	glutamate/aspartate ABC transporter, permease protein GltJ
620	 36.73	0	677017..678399	-	460	121602131	-	BARBAKC583_0658	-	putative glutamate/aspartate ABC transporter, permease protein/periplasmic glutamate/aspartate-binding protein
621	 35.86	0	678545..679453	-	302	121602735	gltI1	BARBAKC583_0659	-	glutamate/aspartate ABC transporter, periplasmic glutamate/aspartate-binding protein
622	 35.73	0	679571..680362	-	263	121602003	xth2	BARBAKC583_0660	-	exodeoxyribonuclease III
623	 45.97	+1	680844..681215	+	123	121602315	rpsL	BARBAKC583_0661	-	30S ribosomal protein S12
624	 45.01	+1	681247..681717	+	156	121601921	rpsG1	BARBAKC583_0662	-	30S ribosomal protein S7
625	 41.87	0	681747..683831	+	694	121602191	fusA1	BARBAKC583_0663	-	elongation factor G
626	 44.98	+1	683896..685071	+	391	121601791	tuf2	BARBAKC583_0664	-	elongation factor Tu
627	 46.28	+1	685140..685448	+	102	121602082	rpsJ1	BARBAKC583_0665	-	ribosomal protein S10
628	 43.86	+1	685476..686216	+	246	121602668	rplC	BARBAKC583_0666	-	50S ribosomal protein L3
629	 40.10	0	686216..686836	+	206	121602068	rplD	BARBAKC583_0667	-	50S ribosomal protein L4
39.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.