IslandPathversion 1.0

IslandPath Analysis: Bartonella bacilliformis KC583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.00 STD DEV: 4.11
Bartonella bacilliformis KC583, complete genome - 1..1445021
1283 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
440	 40.00	0	469596..469760	+	54	121602118	-	BARBAKC583_0463	-	hypothetical protein
441	 39.55	0	469973..470857	+	294	121601860	dapA	BARBAKC583_0464	-	dihydrodipicolinate synthase
442	 36.69	0	470876..471352	+	158	121601796	smpB	BARBAKC583_0465	-	SsrA-binding protein
443	 41.05	0	471387..472073	-	228	121602333	-	BARBAKC583_0466	-	uracil DNA glycosylase family protein
444	 41.10	0	472472..472870	+	132	121602158	rpoZ	BARBAKC583_0467	-	DNA-directed RNA polymerase subunit omega
445	 38.58	0	472998..475226	+	742	121602722	relA	BARBAKC583_0468	-	GTP pyrophosphokinase
446	 40.07	0	475242..475820	+	192	121602216	pyrE	BARBAKC583_0469	-	orotate phosphoribosyltransferase
447	 34.99	0	475914..476516	+	200	121602052	-	BARBAKC583_0470	-	hypothetical protein
448	 32.84	-1	476513..476914	+	133	121602634	acpS	BARBAKC583_0471	-	4'-phosphopantetheinyl transferase
449	 37.68	0	476982..477764	+	260	121602533	lepB	BARBAKC583_0472	-	signal peptidase I
450	 41.67	0	477775..478482	+	235	121602768	rnc	BARBAKC583_0473	-	ribonuclease III
451	 39.29	0	478475..479380	+	301	121602370	era	BARBAKC583_0474	-	GTP-binding protein Era
452	 40.65	0	479383..480120	+	245	121601946	recO	BARBAKC583_0475	-	DNA repair protein RecO
453	 39.48	0	480157..481002	+	281	121602550	panC	BARBAKC583_0476	-	pantoate--beta-alanine ligase
454	 42.16	0	481014..481829	+	271	121602112	panB	BARBAKC583_0477	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
455	 34.03	-1	482811..483671	-	286	121602749	-	BARBAKC583_0479	-	aminomethyltransferase
456	 42.23	0	483735..485060	+	441	121602035	-	BARBAKC583_0480	-	dihydroorotase
457	 37.92	0	485478..486980	+	500	121602424	cysS	BARBAKC583_0481	-	cysteinyl-tRNA synthetase
458	 38.91	0	487389..489272	+	627	121602194	-	BARBAKC583_0482	-	ABC transporter, permease/ATP-binding protein
459	 40.92	0	489384..490082	+	232	121602598	psd	BARBAKC583_0483	-	phosphatidylserine decarboxylase
460	 39.29	0	490091..490930	+	279	121601710	pssA	BARBAKC583_0484	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
461	 38.67	0	491013..491762	-	249	121602443	-	BARBAKC583_0485	-	short chain dehydrogenase/reductase family oxidoreductase
462	 40.24	0	491765..493255	-	496	121601755	cvpA1	BARBAKC583_0486	-	amidophosphoribosyltransferase
463	 33.16	-1	493343..493906	-	187	121601989	cvpA2	BARBAKC583_0487	-	CvpA protein
464	 34.19	-1	494201..494668	-	155	121601900	cvpA	BARBAKC583_0488	-	CvpA protein
465	 41.85	0	494823..496196	-	457	121601948	radA	BARBAKC583_0489	-	DNA repair protein RadA
466	 38.12	0	496209..497711	-	500	121602539	dnaB	BARBAKC583_0490	-	replicative DNA helicase
467	 37.22	0	498165..498704	-	179	121601657	rplI	BARBAKC583_0491	-	ribosomal protein L9
468	 33.84	-1	498730..499710	-	326	121602521	-	BARBAKC583_0492	-	hypothetical protein
469	 38.15	0	499866..500114	-	82	121602413	rpsR	BARBAKC583_0493	-	30S ribosomal protein S18
470	 42.58	0	500114..500524	-	136	121601858	rpsF	BARBAKC583_0494	-	30S ribosomal protein S6
471	 35.37	0	500881..501468	+	195	121602911	-	BARBAKC583_0495	-	PAP2 superfamily protein
472	 41.90	0	501535..502479	+	314	121601676	fabD	BARBAKC583_0496	-	malonyl CoA-acyl carrier protein transacylase
473	 39.57	0	502498..503235	+	245	121602121	fabG	BARBAKC583_0497	-	3-ketoacyl-(acyl-carrier-protein) reductase
474	 39.66	0	503494..503730	+	78	121602848	acpP	BARBAKC583_0498	-	acyl carrier protein
475	 44.42	+1	503840..505102	+	420	121602502	fabF	BARBAKC583_0499	-	3-oxoacyl-(acyl carrier protein) synthase II
476	 33.33	-1	505068..505199	+	43	121601886	-	BARBAKC583_0500	-	hypothetical protein
477	 38.02	0	505211..506320	+	369	121601894	-	BARBAKC583_0501	-	hypothetical protein
478	 35.59	0	506402..507067	+	221	121602105	-	BARBAKC583_0502	-	guanylate kinase
479	 40.43	0	507118..507948	-	276	121602690	ksgA	BARBAKC583_0503	-	dimethyladenosine transferase
480	 40.55	0	507939..508949	-	336	121602284	pdxA	BARBAKC583_0504	-	4-hydroxythreonine-4-phosphate dehydrogenase
481	 34.56	-1	508949..509926	-	325	121602042	-	BARBAKC583_0505	-	SurA domain-containing protein
482	 34.93	0	510034..512409	-	791	121602732	-	BARBAKC583_0506	-	organic solvent tolerance protein
483	 36.90	0	512422..513513	-	363	121601841	-	BARBAKC583_0507	-	YjgP/YjgQ permease
484	 35.26	0	513510..514700	-	396	121602513	-	BARBAKC583_0508	-	YjgP/YjgQ permease
485	 37.78	0	515077..515526	+	149	121602532	holC	BARBAKC583_0509	-	DNA polymerase III subunit chi
486	 35.00	0	515526..515705	+	59	121602623	-	BARBAKC583_0510	-	hypothetical protein
487	 32.20	-1	515698..515961	+	87	121601769	-	BARBAKC583_0511	-	hypothetical protein
488	 37.38	0	516533..518980	+	815	121602465	-	BARBAKC583_0512	-	putative adhesin/invasin
489	 38.62	0	519417..521819	+	800	121602242	-	BARBAKC583_0513	-	putative adhesin/invasin
490	 41.13	0	522543..522965	+	140	121602336	ndk	BARBAKC583_0514	-	nucleoside diphosphate kinase
491	 40.68	0	523436..524020	-	194	121602836	pgsA	BARBAKC583_0515	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
492	 37.99	0	524104..526080	-	658	121602255	uvrC	BARBAKC583_0516	-	excinuclease ABC subunit C
493	 37.60	0	526474..527340	-	288	121601890	-	BARBAKC583_0517	-	yhiR family protein
494	 27.64	-2	527435..527557	-	40	121602102	-	BARBAKC583_0518	-	hypothetical protein
495	 41.63	0	528351..529628	+	425	121601913	serS	BARBAKC583_0519	-	seryl-tRNA synthetase
496	 36.21	0	529763..530422	+	219	121602614	pcm	BARBAKC583_0520	-	protein-L-isoaspartate O-methyltransferase
497	 38.94	0	530587..531780	+	397	121602484	-	BARBAKC583_0521	-	LysM/M23 peptidase
498	 30.36	-2	532091..532258	+	55	121601668	-	BARBAKC583_0522	-	hypothetical protein
499	 40.86	0	532537..533001	+	154	121601937	yajC	BARBAKC583_0523	-	preprotein translocase, YajC subunit
500	 31.03	-1	533009..533182	-	57	121602236	-	BARBAKC583_0524	-	hypothetical protein
501	 43.15	+1	533391..533777	+	128	121601747	-	BARBAKC583_0525	-	hypothetical protein
502	 34.73	-1	533774..534634	+	286	121602819	-	BARBAKC583_0526	-	hypothetical protein
503	 36.88	0	534886..536775	-	629	121602029	-	BARBAKC583_0527	-	hypothetical protein
504	 41.83	0	536964..537728	+	254	121601667	tpiA	BARBAKC583_0528	-	triosephosphate isomerase
505	 39.33	0	537827..538276	+	149	121602235	secG	BARBAKC583_0529	-	preprotein translocase subunit SecG
506	 39.10	0	538394..540022	+	542	121602104	pyrG	BARBAKC583_0530	-	CTP synthetase
507	 38.16	0	540059..540907	+	282	121602682	kdsA	BARBAKC583_0531	-	2-dehydro-3-deoxyphosphooctonate aldolase
508	 39.78	0	540998..542269	+	423	121602117	eno	BARBAKC583_0532	-	phosphopyruvate hydratase
509	 34.85	-1	542600..542929	+	109	121602813	-	BARBAKC583_0533	-	septum formation initiator family protein
510	 42.07	0	543060..544112	+	350	121602213	pdhA	BARBAKC583_0534	-	pyruvate dehydrogenase E1 component, alpha subunit
511	 40.81	0	544129..545493	+	454	121602436	pdhB	BARBAKC583_0535	-	pyruvate dehydrogenase subunit beta
512	 39.82	0	545508..546833	+	441	121601717	pdhC	BARBAKC583_0536	-	branched-chain alpha-keto acid dehydrogenase subunit E2
513	 40.93	0	547049..548509	+	486	121602441	lpdA2	BARBAKC583_0537	-	dihydrolipoamide dehydrogenase
514	 40.04	0	548586..549539	+	317	121601839	lipA	BARBAKC583_0538	-	lipoyl synthase
515	 33.55	-1	549551..550012	+	153	121601706	-	BARBAKC583_0539	-	cyclase/dehydrase family protein
516	 39.87	0	550103..551296	-	397	121602276	ispDF	BARBAKC583_0540	-	IspD/IspF bifunctional enzyme
517	 30.30	-2	551809..551940	+	43	121602829	-	BARBAKC583_0541	-	hypothetical protein
518	 39.30	0	551962..554190	+	742	121601788	ntrY	BARBAKC583_0542	-	nitrogen regulation protein NtrY
519	 39.29	0	554218..555576	+	452	121602361	ntrX	BARBAKC583_0543	-	nitrogen assimilation regulatory protein NtrX
520	 39.51	0	555580..556956	+	458	121601925	trkA	BARBAKC583_0544	-	potassium transporter peripheral membrane component
521	 38.55	0	557915..558547	+	210	121602655	clpP	BARBAKC583_0546	-	ATP-dependent Clp protease proteolytic subunit
522	 39.92	0	558755..560029	+	424	121601766	clpX	BARBAKC583_0547	-	ATP-dependent protease ATP-binding subunit
523	 38.12	0	560206..562629	+	807	121602500	lon	BARBAKC583_0548	-	ATP-dependent protease La
524	 28.95	-2	562604..562717	+	37	121601975	-	BARBAKC583_0549	-	hypothetical protein
525	 41.58	0	562856..563134	+	92	121602375	hupB	BARBAKC583_0550	-	DNA-binding protein HU-beta
526	 38.06	0	563823..565217	-	464	121602120	gid	BARBAKC583_0551	-	tRNA (uracil-5-)-methyltransferase Gid
527	 35.72	0	565640..567064	+	474	121602650	tig	BARBAKC583_0553	-	trigger factor
528	 38.93	0	567236..568735	+	499	121602274	gatB	BARBAKC583_0554	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
529	 40.10	0	568930..569328	+	132	121602827	-	BARBAKC583_0555	-	NADH dehydrogenase
530	 37.59	0	569416..569814	+	132	121602347	-	BARBAKC583_0556	-	hypothetical protein
531	 36.51	0	569989..570492	+	167	121601680	-	BARBAKC583_0557	-	hypothetical protein
532	 33.75	-1	570600..571322	+	240	121601865	-	BARBAKC583_0559	-	S54 family peptidase
533	 40.91	0	571312..572142	-	276	121602409	-	BARBAKC583_0558	-	RNA methyltransferase
534	 44.68	+1	572465..572605	+	46	121601787	-	BARBAKC583_0562	-	hypothetical protein
535	 44.90	+1	572688..573863	+	391	121602575	tuf1	BARBAKC583_0563	-	elongation factor Tu
536	 38.73	0	574217..574420	+	67	121602263	secE	BARBAKC583_0565	-	preprotein translocase subunit SecE
537	 40.11	0	574441..574971	+	176	121602807	nusG	BARBAKC583_0566	-	transcription antitermination protein NusG
538	 41.49	0	575124..575552	+	142	121602562	rplK	BARBAKC583_0567	-	50S ribosomal protein L11
539	 41.06	0	575557..576255	+	232	121601687	rplA	BARBAKC583_0568	-	50S ribosomal protein L1
39.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.