IslandPathversion 1.0

IslandPath Analysis: Bartonella bacilliformis KC583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.00 STD DEV: 4.11
Bartonella bacilliformis KC583, complete genome - 1..1445021
1283 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
389	 32.34	-1	408419..409324	-	301	121602799	-	BARBAKC583_0408	-	hypothetical protein
390	 37.68	0	410045..412921	-	958	121602305	-	BARBAKC583_0410	-	sensory box-containing diguanylate cyclase/cyclic diguanylate phosphodiesterase
391	 39.01	0	413366..414634	-	422	121601771	-	BARBAKC583_0411	-	M16 family peptidase
392	 34.49	-1	415015..415707	-	230	121601956	-	BARBAKC583_0412	-	HAD family hydrolase
393	 39.67	0	416018..417154	+	378	121602378	ccrMIM	BARBAKC583_0413	-	modification methylase CcrMI
394	 38.65	0	417244..418296	-	350	121602108	mutY	BARBAKC583_0414	-	A/G-specific adenine glycosylase
395	 31.62	-1	418329..418445	+	38	121602473	-	BARBAKC583_0415	-	hypothetical protein
396	 35.56	0	418517..419011	+	164	121602860	-	BARBAKC583_0416	-	hypothetical protein
397	 36.41	0	419106..419756	+	216	121602418	-	BARBAKC583_0417	-	DSBA-like thioredoxin domain-containing protein
398	 41.56	0	419941..422628	+	895	121601968	ppdK	BARBAKC583_0418	-	pyruvate phosphate dikinase
399	 35.51	0	423656..424252	+	198	121602729	sodB	BARBAKC583_0420	-	superoxide dismutase
400	 37.88	0	424345..426435	-	696	121602456	-	BARBAKC583_0421	-	peptidase, S9A/B/C family protein
401	 21.28	-2	427036..427176	-	46	121601955	-	BARBAKC583_0422	-	hypothetical protein
402	 41.20	0	427263..427694	+	143	121602360	-	BARBAKC583_0423	-	Ros/MucR family transcriptional regulator
403	 37.75	0	427808..428215	-	135	121601721	sufE	BARBAKC583_0424	-	cysteine desulfuration protein SufE
404	 32.23	-1	428340..428702	-	120	121602754	-	BARBAKC583_0425	-	hypothetical protein
405	 32.86	-1	429266..430111	+	281	121602040	-	BARBAKC583_0426	-	peptidoglycan binding domain-containing protein
406	 44.07	+1	430337..430513	+	58	121602820	-	BARBAKC583_0427	-	hypothetical protein
407	 39.64	0	430531..431196	+	221	121602270	feuP	BARBAKC583_0428	-	transcriptional regulator FeuP
408	 38.40	0	431193..432614	+	473	121602486	feuQ	BARBAKC583_0429	-	sensor histidine kinase FeuQ
409	 37.51	0	432728..433564	+	278	121601826	-	BARBAKC583_0430	-	putative cytochrome c-type biogenesis protein CycH
410	 34.17	-1	433763..434239	+	158	121602569	cycJ	BARBAKC583_0431	-	cytochrome c-type biogenesis protein CcmE
411	 36.67	0	434255..436234	+	659	121602094	cycK	BARBAKC583_0432	-	cytochrome c-type biogenesis protein CycK
412	 33.78	-1	436237..436680	+	147	121602425	cycL	BARBAKC583_0433	-	cytochrome c-type biogenesis protein CycL
413	 40.97	0	436882..438399	+	505	121601816	-	BARBAKC583_0434	-	protease Do family protein
414	 40.47	0	438476..439162	+	228	121602059	-	BARBAKC583_0435	-	DNA-binding response regulator
415	 38.68	0	439159..440541	+	460	121602674	-	BARBAKC583_0436	-	sensor histidine kinase
416	 23.81	-2	440609..440734	+	41	121602620	-	BARBAKC583_0437	-	hypothetical protein
417	 37.55	0	440857..443178	-	773	121602141	-	BARBAKC583_0438	-	putative non-motile and phage-resistance protein
418	 38.17	0	443458..446085	-	875	121602086	pepN	BARBAKC583_0439	-	aminopeptidase N
419	 41.55	0	446164..446991	-	275	121602683	-	BARBAKC583_0440	-	uracil-DNA glycosylase
420	 38.47	0	447202..447960	-	252	121601877	thiD	BARBAKC583_0441	-	phosphomethylpyrimidine kinase
421	 37.13	0	447951..448556	-	201	121602509	thiE	BARBAKC583_0442	-	thiamine-phosphate pyrophosphorylase
422	 40.96	0	448553..449326	-	257	121601799	thiG	BARBAKC583_0443	-	thiazole synthase
423	 35.86	0	449331..449528	-	65	121602362	thiS	BARBAKC583_0444	-	sulfur carrier protein ThiS
424	 39.43	0	449532..450482	-	316	121601887	-	BARBAKC583_0445	-	thiamine biosynthesis oxidoreductase
425	 40.41	0	450479..452314	-	611	121602460	thiC	BARBAKC583_0446	-	thiamine biosynthesis protein ThiC
426	 38.49	0	453146..454366	-	406	121601793	-	BARBAKC583_0447	-	porin family protein
427	 34.05	-1	455541..455819	+	92	121602300	-	BARBAKC583_0449	-	hypothetical protein
428	 37.78	0	455883..456107	+	74	121602837	-	BARBAKC583_0450	-	hypothetical protein
429	 33.96	-1	456224..456382	+	52	121602254	-	BARBAKC583_0451	-	hypothetical protein
430	 41.00	0	456477..458420	-	647	121602680	-	BARBAKC583_0452	-	hypothetical protein
431	 36.95	0	459089..459862	+	257	121602079	-	BARBAKC583_0453	-	N-acetylmuramoyl-L-alanine amidase family protein
432	 27.69	-2	459877..460071	-	64	121602429	-	BARBAKC583_0454	-	hypothetical protein
433	 38.36	0	460068..460862	-	264	121601677	hmuV	BARBAKC583_0455	-	hemin importer ATP-binding subunit
434	 37.69	0	460855..461955	-	366	121602651	hmuU	BARBAKC583_0456	-	hemin ABC transporter, permease protein
435	 36.95	0	461952..462863	-	303	121601903	hmuT	BARBAKC583_0457	-	hemin ABC transporter, periplasmic hemin-binding protein
436	 36.11	0	462881..463924	-	347	121602119	hmuS	BARBAKC583_0458	-	hemin transport protein HmuS
437	 25.76	-2	463995..464126	+	43	121602615	-	BARBAKC583_0459	-	hypothetical protein
438	 36.98	0	464173..466368	-	731	121602899	-	BARBAKC583_0460	-	TonB-dependent heme/hemoglobin receptor family protein
439	 39.08	0	467633..469597	-	654	121602660	-	BARBAKC583_0462	-	transglycosylase
440	 40.00	0	469596..469760	+	54	121602118	-	BARBAKC583_0463	-	hypothetical protein
441	 39.55	0	469973..470857	+	294	121601860	dapA	BARBAKC583_0464	-	dihydrodipicolinate synthase
442	 36.69	0	470876..471352	+	158	121601796	smpB	BARBAKC583_0465	-	SsrA-binding protein
443	 41.05	0	471387..472073	-	228	121602333	-	BARBAKC583_0466	-	uracil DNA glycosylase family protein
444	 41.10	0	472472..472870	+	132	121602158	rpoZ	BARBAKC583_0467	-	DNA-directed RNA polymerase subunit omega
445	 38.58	0	472998..475226	+	742	121602722	relA	BARBAKC583_0468	-	GTP pyrophosphokinase
446	 40.07	0	475242..475820	+	192	121602216	pyrE	BARBAKC583_0469	-	orotate phosphoribosyltransferase
447	 34.99	0	475914..476516	+	200	121602052	-	BARBAKC583_0470	-	hypothetical protein
448	 32.84	-1	476513..476914	+	133	121602634	acpS	BARBAKC583_0471	-	4'-phosphopantetheinyl transferase
449	 37.68	0	476982..477764	+	260	121602533	lepB	BARBAKC583_0472	-	signal peptidase I
450	 41.67	0	477775..478482	+	235	121602768	rnc	BARBAKC583_0473	-	ribonuclease III
451	 39.29	0	478475..479380	+	301	121602370	era	BARBAKC583_0474	-	GTP-binding protein Era
452	 40.65	0	479383..480120	+	245	121601946	recO	BARBAKC583_0475	-	DNA repair protein RecO
453	 39.48	0	480157..481002	+	281	121602550	panC	BARBAKC583_0476	-	pantoate--beta-alanine ligase
454	 42.16	0	481014..481829	+	271	121602112	panB	BARBAKC583_0477	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
455	 34.03	-1	482811..483671	-	286	121602749	-	BARBAKC583_0479	-	aminomethyltransferase
456	 42.23	0	483735..485060	+	441	121602035	-	BARBAKC583_0480	-	dihydroorotase
457	 37.92	0	485478..486980	+	500	121602424	cysS	BARBAKC583_0481	-	cysteinyl-tRNA synthetase
458	 38.91	0	487389..489272	+	627	121602194	-	BARBAKC583_0482	-	ABC transporter, permease/ATP-binding protein
459	 40.92	0	489384..490082	+	232	121602598	psd	BARBAKC583_0483	-	phosphatidylserine decarboxylase
460	 39.29	0	490091..490930	+	279	121601710	pssA	BARBAKC583_0484	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
461	 38.67	0	491013..491762	-	249	121602443	-	BARBAKC583_0485	-	short chain dehydrogenase/reductase family oxidoreductase
462	 40.24	0	491765..493255	-	496	121601755	cvpA1	BARBAKC583_0486	-	amidophosphoribosyltransferase
463	 33.16	-1	493343..493906	-	187	121601989	cvpA2	BARBAKC583_0487	-	CvpA protein
464	 34.19	-1	494201..494668	-	155	121601900	cvpA	BARBAKC583_0488	-	CvpA protein
465	 41.85	0	494823..496196	-	457	121601948	radA	BARBAKC583_0489	-	DNA repair protein RadA
466	 38.12	0	496209..497711	-	500	121602539	dnaB	BARBAKC583_0490	-	replicative DNA helicase
467	 37.22	0	498165..498704	-	179	121601657	rplI	BARBAKC583_0491	-	ribosomal protein L9
468	 33.84	-1	498730..499710	-	326	121602521	-	BARBAKC583_0492	-	hypothetical protein
469	 38.15	0	499866..500114	-	82	121602413	rpsR	BARBAKC583_0493	-	30S ribosomal protein S18
470	 42.58	0	500114..500524	-	136	121601858	rpsF	BARBAKC583_0494	-	30S ribosomal protein S6
471	 35.37	0	500881..501468	+	195	121602911	-	BARBAKC583_0495	-	PAP2 superfamily protein
472	 41.90	0	501535..502479	+	314	121601676	fabD	BARBAKC583_0496	-	malonyl CoA-acyl carrier protein transacylase
473	 39.57	0	502498..503235	+	245	121602121	fabG	BARBAKC583_0497	-	3-ketoacyl-(acyl-carrier-protein) reductase
474	 39.66	0	503494..503730	+	78	121602848	acpP	BARBAKC583_0498	-	acyl carrier protein
475	 44.42	+1	503840..505102	+	420	121602502	fabF	BARBAKC583_0499	-	3-oxoacyl-(acyl carrier protein) synthase II
476	 33.33	-1	505068..505199	+	43	121601886	-	BARBAKC583_0500	-	hypothetical protein
477	 38.02	0	505211..506320	+	369	121601894	-	BARBAKC583_0501	-	hypothetical protein
478	 35.59	0	506402..507067	+	221	121602105	-	BARBAKC583_0502	-	guanylate kinase
479	 40.43	0	507118..507948	-	276	121602690	ksgA	BARBAKC583_0503	-	dimethyladenosine transferase
480	 40.55	0	507939..508949	-	336	121602284	pdxA	BARBAKC583_0504	-	4-hydroxythreonine-4-phosphate dehydrogenase
481	 34.56	-1	508949..509926	-	325	121602042	-	BARBAKC583_0505	-	SurA domain-containing protein
482	 34.93	0	510034..512409	-	791	121602732	-	BARBAKC583_0506	-	organic solvent tolerance protein
483	 36.90	0	512422..513513	-	363	121601841	-	BARBAKC583_0507	-	YjgP/YjgQ permease
484	 35.26	0	513510..514700	-	396	121602513	-	BARBAKC583_0508	-	YjgP/YjgQ permease
485	 37.78	0	515077..515526	+	149	121602532	holC	BARBAKC583_0509	-	DNA polymerase III subunit chi
486	 35.00	0	515526..515705	+	59	121602623	-	BARBAKC583_0510	-	hypothetical protein
487	 32.20	-1	515698..515961	+	87	121601769	-	BARBAKC583_0511	-	hypothetical protein
488	 37.38	0	516533..518980	+	815	121602465	-	BARBAKC583_0512	-	putative adhesin/invasin
39.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.