IslandPathversion 1.0

IslandPath Analysis: Bartonella bacilliformis KC583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.00 STD DEV: 4.11
Bartonella bacilliformis KC583, complete genome - 1..1445021
1283 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
333	 32.58	-1	348936..349199	-	87	121601675	-	BARBAKC583_0353	-	hypothetical protein
334	 40.00	0	349418..349642	+	74	121602396	nrdH	BARBAKC583_0354	-	glutaredoxin-like protein NrdH
335	 38.93	0	349642..350034	+	130	121602259	nrdI	BARBAKC583_0355	-	ribonucleotide reductase stimulatory protein
336	 37.47	0	350022..352172	+	716	121602719	nrdE	BARBAKC583_0356	-	ribonucleotide-diphosphate reductase subunit alpha
337	 36.10	0	352185..353159	+	324	121602770	nrdF	BARBAKC583_0358	-	ribonucleotide-diphosphate reductase subunit beta
338	 36.91	0	353156..354022	-	288	121601994	-	BARBAKC583_0357	-	HemK family methyltransferase
339	 40.65	0	354019..355098	-	359	121602027	prfA	BARBAKC583_0359	-	peptide chain release factor 1
340	 36.93	0	355283..355699	-	138	121602581	fur	BARBAKC583_0360	-	ferric uptake regulation protein
341	 39.88	0	355713..358445	-	910	121602737	secA	BARBAKC583_0361	-	preprotein translocase subunit SecA
342	 37.03	0	358846..359793	+	315	121602142	-	BARBAKC583_0362	-	peptidyl-prolyl cis-trans isomerase domain-containing protein
343	 41.73	0	359895..361133	+	412	121602876	argJ	BARBAKC583_0363	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
344	 39.61	0	361255..361668	+	137	121602402	mutT	BARBAKC583_0364	-	mutator mutT protein
345	 37.24	0	362009..363364	+	451	121601867	-	BARBAKC583_0365	-	dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family protein
346	 38.72	0	363387..364277	-	296	121602556	-	BARBAKC583_0366	-	hypothetical protein
347	 40.74	0	364495..365250	+	251	121601823	-	BARBAKC583_0367	-	comF family protein
348	 35.27	0	365290..365547	+	85	121602498	grxC	BARBAKC583_0368	-	glutaredoxin 3
349	 38.55	0	365565..366311	-	248	121602909	ubiG	BARBAKC583_0369	-	3-demethylubiquinone-9 3-methyltransferase
350	 41.47	0	366495..367748	+	417	121602341	-	BARBAKC583_0370	-	aspartate kinase
351	 40.10	0	368168..369526	-	452	121602122	nhaA	BARBAKC583_0371	-	Na+/H+ antiporter NhaA
352	 34.27	-1	369647..371350	-	567	121602854	-	BARBAKC583_0372	-	hypothetical protein
353	 36.16	0	371869..372540	+	223	121602031	-	BARBAKC583_0373	-	hypothetical protein
354	 41.21	0	372545..373966	+	473	121602708	engA	BARBAKC583_0374	-	GTP-binding protein EngA
355	 40.18	0	374282..374719	+	145	121602317	-	BARBAKC583_0375	-	hypothetical protein
356	 36.89	0	374721..375479	+	252	121602220	atpB	BARBAKC583_0376	-	F0F1 ATP synthase subunit A
357	 41.56	0	375534..375764	+	76	121602464	-	BARBAKC583_0377	-	F0F1 ATP synthase subunit C
358	 36.21	0	375972..376457	+	161	121602545	-	BARBAKC583_0378	-	F0F1 ATP synthase subunit B'
359	 36.46	0	376469..376948	+	159	121602072	-	BARBAKC583_0379	-	F0F1 ATP synthase subunit B
360	 37.65	0	377343..379565	-	740	121602631	glyS	BARBAKC583_0380	-	glycyl-tRNA synthetase subunit beta
361	 40.27	0	379558..380508	-	316	121602247	glyQ	BARBAKC583_0381	-	glycyl-tRNA synthetase subunit alpha
362	 36.34	0	380574..382304	-	576	121602403	-	BARBAKC583_0382	-	TPR repeat-containing protein
363	 39.04	0	382394..383410	-	338	121602666	-	BARBAKC583_0383	-	polyprenyl synthetase
364	 39.65	0	383672..384463	+	263	121601931	-	BARBAKC583_0384	-	methyltransferase domain-containing protein
365	 40.61	0	384566..385417	+	283	121602669	-	BARBAKC583_0385	-	S49 family peptidase
366	 33.86	-1	385496..385684	+	62	121602099	-	BARBAKC583_0386	-	hypothetical protein
367	 39.78	0	385681..386595	+	304	121602449	ispE	BARBAKC583_0387	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
368	 42.60	0	386884..387552	+	222	121601736	rnhB	BARBAKC583_0388	-	ribonuclease HII
369	 40.19	0	387549..388511	+	320	121602316	-	BARBAKC583_0389	-	Sua5/YciO/YrdC family protein
370	 38.94	0	388514..389923	+	469	121601876	-	BARBAKC583_0390	-	FAD-binding protein
371	 34.30	-1	390075..390593	+	172	121601919	-	BARBAKC583_0391	-	hypothetical protein
372	 41.41	0	390863..392137	-	424	121602480	purD	BARBAKC583_0392	-	phosphoribosylamine--glycine ligase
373	 38.01	0	392230..393234	+	334	121602063	ubiA	BARBAKC583_0393	-	prenyltransferase
374	 39.51	0	393315..393962	-	215	121602642	pdxH	BARBAKC583_0394	-	pyridoxamine 5'-phosphate oxidase
375	 39.44	0	394256..395155	+	299	121602693	-	BARBAKC583_0395	-	DnaJ family protein
376	 42.25	0	395293..396111	+	272	121602192	-	BARBAKC583_0396	-	enoyl-(acyl carrier protein) reductase
377	 42.28	0	396240..397334	+	364	121601775	aroC	BARBAKC583_0397	-	chorismate synthase
378	 37.65	0	397345..398457	+	370	121602555	ribBA	BARBAKC583_0398	-	riboflavin biosynthesis protein RibBA
379	 34.51	-1	398465..398719	+	84	121601831	xseB	BARBAKC583_0399	-	exodeoxyribonuclease VII small subunit
380	 42.62	0	398917..400833	+	638	121602344	dxs	BARBAKC583_0400	-	1-deoxy-D-xylulose-5-phosphate synthase
381	 38.65	0	400841..401593	+	250	121601957	-	BARBAKC583_0401	-	hemolysin A
382	 39.55	0	401583..402836	+	417	121602231	-	BARBAKC583_0402	-	tRNA (Uracil-5-)-methyltransferase
383	 41.23	0	402896..404314	-	472	121602797	-	BARBAKC583_0403	-	TldD/PmbA family protein
384	 37.96	0	404424..404963	-	179	121602641	-	BARBAKC583_0404	-	invasion associated locus B family protein
385	 38.03	0	405361..406296	+	311	121602050	cyoE	BARBAKC583_0405	-	protoheme IX farnesyltransferase
386	 38.95	0	406484..407533	+	349	121601859	ispH	BARBAKC583_0406	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
387	 23.81	-2	407646..407771	+	41	121602549	-	BARBAKC583_0407	-	hypothetical protein
388	 41.45	0	407962..408429	+	155	121602209	rnhA	BARBAKC583_0409	-	ribonuclease HI
389	 32.34	-1	408419..409324	-	301	121602799	-	BARBAKC583_0408	-	hypothetical protein
390	 37.68	0	410045..412921	-	958	121602305	-	BARBAKC583_0410	-	sensory box-containing diguanylate cyclase/cyclic diguanylate phosphodiesterase
391	 39.01	0	413366..414634	-	422	121601771	-	BARBAKC583_0411	-	M16 family peptidase
392	 34.49	-1	415015..415707	-	230	121601956	-	BARBAKC583_0412	-	HAD family hydrolase
393	 39.67	0	416018..417154	+	378	121602378	ccrMIM	BARBAKC583_0413	-	modification methylase CcrMI
394	 38.65	0	417244..418296	-	350	121602108	mutY	BARBAKC583_0414	-	A/G-specific adenine glycosylase
395	 31.62	-1	418329..418445	+	38	121602473	-	BARBAKC583_0415	-	hypothetical protein
396	 35.56	0	418517..419011	+	164	121602860	-	BARBAKC583_0416	-	hypothetical protein
397	 36.41	0	419106..419756	+	216	121602418	-	BARBAKC583_0417	-	DSBA-like thioredoxin domain-containing protein
398	 41.56	0	419941..422628	+	895	121601968	ppdK	BARBAKC583_0418	-	pyruvate phosphate dikinase
399	 35.51	0	423656..424252	+	198	121602729	sodB	BARBAKC583_0420	-	superoxide dismutase
400	 37.88	0	424345..426435	-	696	121602456	-	BARBAKC583_0421	-	peptidase, S9A/B/C family protein
401	 21.28	-2	427036..427176	-	46	121601955	-	BARBAKC583_0422	-	hypothetical protein
402	 41.20	0	427263..427694	+	143	121602360	-	BARBAKC583_0423	-	Ros/MucR family transcriptional regulator
403	 37.75	0	427808..428215	-	135	121601721	sufE	BARBAKC583_0424	-	cysteine desulfuration protein SufE
404	 32.23	-1	428340..428702	-	120	121602754	-	BARBAKC583_0425	-	hypothetical protein
405	 32.86	-1	429266..430111	+	281	121602040	-	BARBAKC583_0426	-	peptidoglycan binding domain-containing protein
406	 44.07	+1	430337..430513	+	58	121602820	-	BARBAKC583_0427	-	hypothetical protein
407	 39.64	0	430531..431196	+	221	121602270	feuP	BARBAKC583_0428	-	transcriptional regulator FeuP
408	 38.40	0	431193..432614	+	473	121602486	feuQ	BARBAKC583_0429	-	sensor histidine kinase FeuQ
409	 37.51	0	432728..433564	+	278	121601826	-	BARBAKC583_0430	-	putative cytochrome c-type biogenesis protein CycH
410	 34.17	-1	433763..434239	+	158	121602569	cycJ	BARBAKC583_0431	-	cytochrome c-type biogenesis protein CcmE
411	 36.67	0	434255..436234	+	659	121602094	cycK	BARBAKC583_0432	-	cytochrome c-type biogenesis protein CycK
412	 33.78	-1	436237..436680	+	147	121602425	cycL	BARBAKC583_0433	-	cytochrome c-type biogenesis protein CycL
413	 40.97	0	436882..438399	+	505	121601816	-	BARBAKC583_0434	-	protease Do family protein
414	 40.47	0	438476..439162	+	228	121602059	-	BARBAKC583_0435	-	DNA-binding response regulator
415	 38.68	0	439159..440541	+	460	121602674	-	BARBAKC583_0436	-	sensor histidine kinase
416	 23.81	-2	440609..440734	+	41	121602620	-	BARBAKC583_0437	-	hypothetical protein
417	 37.55	0	440857..443178	-	773	121602141	-	BARBAKC583_0438	-	putative non-motile and phage-resistance protein
418	 38.17	0	443458..446085	-	875	121602086	pepN	BARBAKC583_0439	-	aminopeptidase N
419	 41.55	0	446164..446991	-	275	121602683	-	BARBAKC583_0440	-	uracil-DNA glycosylase
420	 38.47	0	447202..447960	-	252	121601877	thiD	BARBAKC583_0441	-	phosphomethylpyrimidine kinase
421	 37.13	0	447951..448556	-	201	121602509	thiE	BARBAKC583_0442	-	thiamine-phosphate pyrophosphorylase
422	 40.96	0	448553..449326	-	257	121601799	thiG	BARBAKC583_0443	-	thiazole synthase
423	 35.86	0	449331..449528	-	65	121602362	thiS	BARBAKC583_0444	-	sulfur carrier protein ThiS
424	 39.43	0	449532..450482	-	316	121601887	-	BARBAKC583_0445	-	thiamine biosynthesis oxidoreductase
425	 40.41	0	450479..452314	-	611	121602460	thiC	BARBAKC583_0446	-	thiamine biosynthesis protein ThiC
426	 38.49	0	453146..454366	-	406	121601793	-	BARBAKC583_0447	-	porin family protein
427	 34.05	-1	455541..455819	+	92	121602300	-	BARBAKC583_0449	-	hypothetical protein
428	 37.78	0	455883..456107	+	74	121602837	-	BARBAKC583_0450	-	hypothetical protein
429	 33.96	-1	456224..456382	+	52	121602254	-	BARBAKC583_0451	-	hypothetical protein
430	 41.00	0	456477..458420	-	647	121602680	-	BARBAKC583_0452	-	hypothetical protein
431	 36.95	0	459089..459862	+	257	121602079	-	BARBAKC583_0453	-	N-acetylmuramoyl-L-alanine amidase family protein
432	 27.69	-2	459877..460071	-	64	121602429	-	BARBAKC583_0454	-	hypothetical protein
39.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.