IslandPathversion 1.0

IslandPath Analysis: Bartonella bacilliformis KC583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.00 STD DEV: 4.11
Bartonella bacilliformis KC583, complete genome - 1..1445021
1283 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
261	 44.88	+1	265664..265966	-	100	121601752	-	BARBAKC583_0276	-	putative addiction module antidote protein
262	 44.44	+1	265997..266320	-	107	121602412	-	BARBAKC583_0277	-	putative addiction module killer protein
263	 42.81	0	266629..266934	+	101	121602203	-	BARBAKC583_0278	-	hypothetical protein
264	 36.27	0	266931..267236	+	101	121602350	-	BARBAKC583_0279	-	hypothetical protein
265	 43.59	+1	267431..267664	+	77	121601646	-	BARBAKC583_0280	-	hypothetical protein
266	 29.82	-2	267624..267737	+	37	121602727	-	BARBAKC583_0282	-	hypothetical protein
267	 36.26	0	267730..268002	-	90	121602110	-	BARBAKC583_0281	-	hypothetical protein
268	 37.26	0	268002..268688	-	228	121602595	-	BARBAKC583_0283	-	putative partition protein ParA
269	 41.40	0	269682..270971	+	429	121602411	purA	BARBAKC583_0285	-	adenylosuccinate synthetase
270	 36.13	0	271223..272722	+	499	121602864	-	BARBAKC583_0286	-	hypothetical protein
271	 39.25	0	272773..273684	-	303	121602451	rpoH2	BARBAKC583_0287	-	RNA polymerase factor sigma-32
272	 40.85	0	273827..274837	-	336	121601705	-	BARBAKC583_0288	-	RluA family pseudouridine synthase
273	 40.04	0	274875..276305	-	476	121602647	-	BARBAKC583_0289	-	aldehyde dehydrogenase (NAD) family protein
274	 18.12	-2	276479..276616	+	45	121601909	-	BARBAKC583_0290	-	hypothetical protein
275	 38.64	0	276703..279321	+	872	121602778	-	BARBAKC583_0291	-	FtsK/SpoIIIE family protein
276	 34.29	-1	279902..280318	-	138	121602506	mscL	BARBAKC583_0292	-	large conductance mechanosensitive channel protein
277	 38.57	0	280866..281954	+	362	121601702	pyrD	BARBAKC583_0293	-	dihydroorotate dehydrogenase 2
278	 40.41	0	282333..283760	+	475	121602282	-	BARBAKC583_0295	-	putative glutamine synthetase
279	 37.15	0	283772..285055	+	427	121601809	-	BARBAKC583_0296	-	FAD dependent oxidoreductase
280	 41.78	0	285306..286205	-	299	121601732	folD	BARBAKC583_0297	-	folD bifunctional protein
281	 38.44	0	286511..288391	+	626	121602232	-	BARBAKC583_0298	-	AsmA family protein
282	 33.33	-1	288488..288631	-	47	121601935	-	BARBAKC583_0299	-	hypothetical protein
283	 40.86	0	288857..289600	+	247	121602013	-	BARBAKC583_0300	-	hypothetical protein
284	 39.81	0	289667..291040	+	457	121602200	-	BARBAKC583_0301	-	glutamate--cysteine ligase
285	 45.73	+1	291509..291742	-	77	121602285	rpsU	BARBAKC583_0302	-	30S ribosomal protein S21
286	 39.32	0	292192..292308	+	38	121602009	-	BARBAKC583_0304	-	hypothetical protein
287	 37.82	0	292600..293736	+	378	121602726	-	BARBAKC583_0305	-	RND family efflux transporter MFP subunit
288	 38.05	0	293733..296867	+	1044	121602505	-	BARBAKC583_0306	-	RND efflux transporter
289	 38.67	0	297059..298708	+	549	121602677	pgi	BARBAKC583_0307	-	glucose-6-phosphate isomerase
290	 41.35	0	299126..299599	+	157	121602607	rplU	BARBAKC583_0309	-	50S ribosomal protein L21
291	 43.70	+1	299612..299881	+	89	121601722	rpmA	BARBAKC583_0310	-	50S ribosomal protein L27
292	 45.47	+1	300854..302509	+	551	121601739	-	BARBAKC583_0311	-	Brp family immunodominant surface antigen
293	 41.07	0	302541..303122	+	193	121602367	-	BARBAKC583_0312	-	invasion associated locus B family protein
294	 30.08	-2	304186..304308	+	40	121602239	-	BARBAKC583_0313	-	hypothetical protein
295	 38.51	0	304277..307984	+	1235	121602839	-	BARBAKC583_0314	-	Brp family immunodominant surface antigen
296	 41.94	0	308017..308562	+	181	121602109	-	BARBAKC583_0315	-	invasion associated locus B family protein
297	 42.22	0	309236..309955	+	239	121602887	rrmJ	BARBAKC583_0316	-	ribosomal RNA large subunit methyltransferase J
298	 41.86	0	310141..311160	+	339	121602229	obgE	BARBAKC583_0317	-	GTPase ObgE
299	 39.74	0	311166..312305	+	379	121602624	proB	BARBAKC583_0318	-	gamma-glutamyl kinase
300	 40.11	0	312366..313604	+	412	121602628	proA	BARBAKC583_0319	-	gamma-glutamyl phosphate reductase
301	 41.54	0	313634..314218	+	194	121601896	nadD	BARBAKC583_0320	-	nicotinic acid mononucleotide adenylyltransferase
302	 37.15	0	314324..314716	+	130	121602406	-	BARBAKC583_0321	-	iojap-like protein
303	 40.79	0	314717..315199	+	160	121601669	-	BARBAKC583_0322	-	hypothetical protein
304	 35.63	0	315302..316564	+	420	121601891	-	BARBAKC583_0323	-	M23 peptidase domain-containing protein
305	 39.54	0	316554..317858	+	434	121602448	ctpA	BARBAKC583_0324	-	C-terminal processing peptidase
306	 36.65	0	317927..318439	+	170	121602862	nudH	BARBAKC583_0325	-	dinucleoside polyphosphate hydrolase
307	 38.32	0	318556..319116	+	186	121602308	ialB	BARBAKC583_0326	-	invasion protein B
308	 30.61	-2	319442..319735	+	97	121602269	-	BARBAKC583_0327	-	yggt family protein
309	 35.49	0	319766..320089	+	107	121602415	-	BARBAKC583_0328	-	hypothetical protein
310	 36.70	0	320139..320672	-	177	121601817	ppa	BARBAKC583_0329	-	inorganic pyrophosphatase
311	 41.43	0	320734..322560	-	608	121602900	typA	BARBAKC583_0330	-	GTP-binding protein TypA/BipA
312	 39.29	0	322845..324221	-	458	121601673	mgtE	BARBAKC583_0331	-	magnesium transporter
313	 38.81	0	324569..326593	+	674	121602621	-	BARBAKC583_0332	-	M3 family peptidase
314	 40.02	0	326785..328041	-	418	121602067	-	BARBAKC583_0333	-	putative membrane-bound lytic murein transglycosylase
315	 38.64	0	328310..329194	+	294	121602004	galU	BARBAKC583_0334	-	UTP-glucose-1-phosphate uridylyltransferase
316	 39.88	0	329234..330226	+	330	121602747	-	BARBAKC583_0335	-	KpsF/GutQ family sugar isomerase
317	 36.80	0	330466..330840	-	124	121601726	-	BARBAKC583_0336	-	putative lipoprotein
318	 37.09	0	331097..332482	+	461	121602776	-	BARBAKC583_0337	-	sigma-54 dependent DNA-binding response regulator
319	 19.57	-2	332541..332678	+	45	121602321	-	BARBAKC583_0338	-	hypothetical protein
320	 32.59	-1	332697..332831	-	44	121601728	-	BARBAKC583_0339	-	hypothetical protein
321	 43.13	+1	334582..336081	+	499	121602869	guaB	BARBAKC583_0341	-	inositol-5-monophosphate dehydrogenase
322	 36.12	0	336418..337278	-	286	121602748	-	BARBAKC583_0342	-	putative universal stress protein
323	 41.65	0	337522..338808	+	428	121602202	-	BARBAKC583_0343	-	NOL1/NOP2/sun family protein
324	 40.59	0	338944..340500	+	518	121602609	guaA	BARBAKC583_0344	-	bifunctional GMP synthase/glutamine amidotransferase protein
325	 39.42	0	340681..341403	+	240	121601861	-	BARBAKC583_0345	-	glycerophosphoryl diester phosphodiesterase family protein
326	 36.61	0	341520..342557	-	345	121601701	ugpC	BARBAKC583_0346	-	glycerol-3-phosphate transporter ATP-binding subunit
327	 36.97	0	342560..343411	-	283	121602604	ugpE	BARBAKC583_0347	-	glycerol-3-phosphate ABC transporter, permease protein
328	 35.82	0	343422..344306	-	294	121602228	ugpA	BARBAKC583_0348	-	glycerol-3-phosphate ABC transporter, permease protein
329	 37.03	0	344404..345729	-	441	121602815	ugpB	BARBAKC583_0349	-	glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein
330	 36.18	0	346116..347063	-	315	121601977	-	BARBAKC583_0350	-	ABC transporter, periplasmic substrate-binding protein
331	 38.03	0	347074..347946	-	290	121601873	-	BARBAKC583_0351	-	ABC transporter, permease protein
332	 37.26	0	347972..348709	-	245	121602588	-	BARBAKC583_0352	-	ABC transporter, ATP-binding protein
333	 32.58	-1	348936..349199	-	87	121601675	-	BARBAKC583_0353	-	hypothetical protein
334	 40.00	0	349418..349642	+	74	121602396	nrdH	BARBAKC583_0354	-	glutaredoxin-like protein NrdH
335	 38.93	0	349642..350034	+	130	121602259	nrdI	BARBAKC583_0355	-	ribonucleotide reductase stimulatory protein
336	 37.47	0	350022..352172	+	716	121602719	nrdE	BARBAKC583_0356	-	ribonucleotide-diphosphate reductase subunit alpha
337	 36.10	0	352185..353159	+	324	121602770	nrdF	BARBAKC583_0358	-	ribonucleotide-diphosphate reductase subunit beta
338	 36.91	0	353156..354022	-	288	121601994	-	BARBAKC583_0357	-	HemK family methyltransferase
339	 40.65	0	354019..355098	-	359	121602027	prfA	BARBAKC583_0359	-	peptide chain release factor 1
340	 36.93	0	355283..355699	-	138	121602581	fur	BARBAKC583_0360	-	ferric uptake regulation protein
341	 39.88	0	355713..358445	-	910	121602737	secA	BARBAKC583_0361	-	preprotein translocase subunit SecA
342	 37.03	0	358846..359793	+	315	121602142	-	BARBAKC583_0362	-	peptidyl-prolyl cis-trans isomerase domain-containing protein
343	 41.73	0	359895..361133	+	412	121602876	argJ	BARBAKC583_0363	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
344	 39.61	0	361255..361668	+	137	121602402	mutT	BARBAKC583_0364	-	mutator mutT protein
345	 37.24	0	362009..363364	+	451	121601867	-	BARBAKC583_0365	-	dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family protein
346	 38.72	0	363387..364277	-	296	121602556	-	BARBAKC583_0366	-	hypothetical protein
347	 40.74	0	364495..365250	+	251	121601823	-	BARBAKC583_0367	-	comF family protein
348	 35.27	0	365290..365547	+	85	121602498	grxC	BARBAKC583_0368	-	glutaredoxin 3
349	 38.55	0	365565..366311	-	248	121602909	ubiG	BARBAKC583_0369	-	3-demethylubiquinone-9 3-methyltransferase
350	 41.47	0	366495..367748	+	417	121602341	-	BARBAKC583_0370	-	aspartate kinase
351	 40.10	0	368168..369526	-	452	121602122	nhaA	BARBAKC583_0371	-	Na+/H+ antiporter NhaA
352	 34.27	-1	369647..371350	-	567	121602854	-	BARBAKC583_0372	-	hypothetical protein
353	 36.16	0	371869..372540	+	223	121602031	-	BARBAKC583_0373	-	hypothetical protein
354	 41.21	0	372545..373966	+	473	121602708	engA	BARBAKC583_0374	-	GTP-binding protein EngA
355	 40.18	0	374282..374719	+	145	121602317	-	BARBAKC583_0375	-	hypothetical protein
356	 36.89	0	374721..375479	+	252	121602220	atpB	BARBAKC583_0376	-	F0F1 ATP synthase subunit A
357	 41.56	0	375534..375764	+	76	121602464	-	BARBAKC583_0377	-	F0F1 ATP synthase subunit C
358	 36.21	0	375972..376457	+	161	121602545	-	BARBAKC583_0378	-	F0F1 ATP synthase subunit B'
359	 36.46	0	376469..376948	+	159	121602072	-	BARBAKC583_0379	-	F0F1 ATP synthase subunit B
360	 37.65	0	377343..379565	-	740	121602631	glyS	BARBAKC583_0380	-	glycyl-tRNA synthetase subunit beta
39.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.