IslandPathversion 1.0

IslandPath Analysis: Bartonella bacilliformis KC583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.00 STD DEV: 4.11
Bartonella bacilliformis KC583, complete genome - 1..1445021
1283 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
210	 44.26	+1	213698..213880	+	60	121601685	-	BARBAKC583_0213	-	hypothetical protein
211	 57.26	+2	214274..214390	+	38	121602376	-	BARBAKC583_0214	-	hypothetical protein
212	 39.47	0	214740..214853	+	37	121602139	-	BARBAKC583_0215	-	hypothetical protein
213	 45.10	+1	214858..217458	+	866	121602872	clpB	BARBAKC583_0216	-	chaperone ClpB
214	 42.42	0	217705..217902	+	65	121602890	-	BARBAKC583_0217	-	hypothetical protein
215	 43.06	0	218734..218949	+	71	121601688	-	BARBAKC583_0219	-	hypothetical protein
216	 44.78	+1	219843..220043	+	66	121602211	-	BARBAKC583_0221	-	hypothetical protein
217	 38.36	0	220520..220678	+	52	121602706	-	BARBAKC583_0223	-	hypothetical protein
218	 38.99	0	220931..221089	+	52	121601976	-	BARBAKC583_0224	-	hypothetical protein
219	 39.17	0	222089..222208	+	39	121602882	-	BARBAKC583_0225	-	hypothetical protein
220	 41.74	0	223488..223844	+	118	121602401	-	BARBAKC583_0226	-	hypothetical protein
221	 45.41	+1	225008..226216	+	402	121602586	-	BARBAKC583_0227	-	PBSX family phage terminase large subunit
222	 46.26	+1	226952..228838	+	628	121601756	-	BARBAKC583_0228	-	hypothetical protein
223	 45.82	+1	229424..230368	+	314	121602751	-	BARBAKC583_0229	-	hypothetical protein
224	 44.22	+1	230650..231825	+	391	121602056	-	BARBAKC583_0230	-	hypothetical protein
225	 47.62	+2	231904..232029	+	41	121601654	-	BARBAKC583_0231	-	hypothetical protein
226	 43.90	+1	232244..233227	+	327	121602546	-	BARBAKC583_0232	-	hypothetical protein
227	 44.67	+1	233396..234859	+	487	121602014	-	BARBAKC583_0233	-	hypothetical protein
228	 49.86	+2	234856..235890	+	344	121602759	-	BARBAKC583_0234	-	hypothetical protein
229	 43.94	+1	235887..237065	+	392	121602136	-	BARBAKC583_0235	-	hypothetical protein
230	 44.62	+1	237065..237259	+	64	121602853	-	BARBAKC583_0236	-	hypothetical protein
231	 44.10	+1	237259..237453	+	64	121602577	-	BARBAKC583_0237	-	hypothetical protein
232	 43.21	+1	237453..238424	+	323	121601916	-	BARBAKC583_0238	-	hypothetical protein
233	 38.54	0	238814..239101	+	95	121602030	-	BARBAKC583_0239	-	hypothetical protein
234	 45.85	+1	239158..239820	+	220	121602073	-	BARBAKC583_0240	-	phage lysozyme
235	 44.84	+1	239817..240068	+	83	121601804	-	BARBAKC583_0241	-	hypothetical protein
236	 36.17	0	240061..240201	+	46	121602528	-	BARBAKC583_0242	-	hypothetical protein
237	 33.07	-1	240712..241098	+	128	121602366	-	BARBAKC583_0243	-	hypothetical protein
238	 44.44	+1	241442..241558	+	38	121601763	-	BARBAKC583_0244	-	hypothetical protein
239	 36.00	0	241613..241837	+	74	121602789	-	BARBAKC583_0245	-	hypothetical protein
240	 27.91	-2	242017..242145	+	42	121602230	-	BARBAKC583_0246	-	hypothetical protein
241	 41.32	0	242345..242995	+	216	121602492	-	BARBAKC583_0247	-	hypothetical protein
242	 41.28	0	243152..243667	-	171	121601942	-	BARBAKC583_0248	-	hypothetical protein
243	 40.04	0	243884..244912	-	342	121602353	-	BARBAKC583_0249	-	sensor histidine kinase
244	 42.14	0	244912..245706	-	264	121601883	-	BARBAKC583_0250	-	two-component response regulator
245	 37.92	0	245912..246151	+	79	121602471	-	BARBAKC583_0251	-	hypothetical protein
246	 37.41	0	246542..246688	+	48	121602793	-	BARBAKC583_0253	-	hypothetical protein
247	 37.61	0	246688..246804	+	38	121601746	-	BARBAKC583_0254	-	hypothetical protein
248	 40.61	0	247061..248503	+	480	121602455	-	BARBAKC583_0255	-	sensor histidine kinase
249	 41.32	0	248644..250584	-	646	121601904	-	BARBAKC583_0256	-	M23 peptidase domain-containing protein
250	 40.38	0	250710..250865	-	51	121602036	-	BARBAKC583_0257	-	hypothetical protein
251	 41.45	0	258644..259111	+	155	121602124	-	BARBAKC583_0264	-	hypothetical protein
252	 35.01	0	259768..260124	-	118	121601783	-	BARBAKC583_0265	-	putative HTH-type transcriptional regulator ygjM
253	 34.06	-1	260121..260396	-	91	121602060	-	BARBAKC583_0266	-	hypothetical protein
254	 32.54	-1	260508..260633	-	41	121602915	-	BARBAKC583_0267	-	hypothetical protein
255	 28.33	-2	260690..260809	-	39	121602123	-	BARBAKC583_0268	-	hypothetical protein
256	 31.06	-1	261102..261233	-	43	121602850	-	BARBAKC583_0270	-	hypothetical protein
257	 40.17	0	261273..262427	+	384	121601651	-	BARBAKC583_0271	-	phosphoserine aminotransferase
258	 39.88	0	263748..264389	-	213	121602525	-	BARBAKC583_0273	-	resolvase/recombinase
259	 42.86	0	264605..264856	+	83	121602636	-	BARBAKC583_0274	-	putative DNA-binding transcriptional regulator
260	 42.11	0	264853..265251	+	132	121602619	-	BARBAKC583_0275	-	hypothetical protein
261	 44.88	+1	265664..265966	-	100	121601752	-	BARBAKC583_0276	-	putative addiction module antidote protein
262	 44.44	+1	265997..266320	-	107	121602412	-	BARBAKC583_0277	-	putative addiction module killer protein
263	 42.81	0	266629..266934	+	101	121602203	-	BARBAKC583_0278	-	hypothetical protein
264	 36.27	0	266931..267236	+	101	121602350	-	BARBAKC583_0279	-	hypothetical protein
265	 43.59	+1	267431..267664	+	77	121601646	-	BARBAKC583_0280	-	hypothetical protein
266	 29.82	-2	267624..267737	+	37	121602727	-	BARBAKC583_0282	-	hypothetical protein
267	 36.26	0	267730..268002	-	90	121602110	-	BARBAKC583_0281	-	hypothetical protein
268	 37.26	0	268002..268688	-	228	121602595	-	BARBAKC583_0283	-	putative partition protein ParA
269	 41.40	0	269682..270971	+	429	121602411	purA	BARBAKC583_0285	-	adenylosuccinate synthetase
270	 36.13	0	271223..272722	+	499	121602864	-	BARBAKC583_0286	-	hypothetical protein
271	 39.25	0	272773..273684	-	303	121602451	rpoH2	BARBAKC583_0287	-	RNA polymerase factor sigma-32
272	 40.85	0	273827..274837	-	336	121601705	-	BARBAKC583_0288	-	RluA family pseudouridine synthase
273	 40.04	0	274875..276305	-	476	121602647	-	BARBAKC583_0289	-	aldehyde dehydrogenase (NAD) family protein
274	 18.12	-2	276479..276616	+	45	121601909	-	BARBAKC583_0290	-	hypothetical protein
275	 38.64	0	276703..279321	+	872	121602778	-	BARBAKC583_0291	-	FtsK/SpoIIIE family protein
276	 34.29	-1	279902..280318	-	138	121602506	mscL	BARBAKC583_0292	-	large conductance mechanosensitive channel protein
277	 38.57	0	280866..281954	+	362	121601702	pyrD	BARBAKC583_0293	-	dihydroorotate dehydrogenase 2
278	 40.41	0	282333..283760	+	475	121602282	-	BARBAKC583_0295	-	putative glutamine synthetase
279	 37.15	0	283772..285055	+	427	121601809	-	BARBAKC583_0296	-	FAD dependent oxidoreductase
280	 41.78	0	285306..286205	-	299	121601732	folD	BARBAKC583_0297	-	folD bifunctional protein
281	 38.44	0	286511..288391	+	626	121602232	-	BARBAKC583_0298	-	AsmA family protein
282	 33.33	-1	288488..288631	-	47	121601935	-	BARBAKC583_0299	-	hypothetical protein
283	 40.86	0	288857..289600	+	247	121602013	-	BARBAKC583_0300	-	hypothetical protein
284	 39.81	0	289667..291040	+	457	121602200	-	BARBAKC583_0301	-	glutamate--cysteine ligase
285	 45.73	+1	291509..291742	-	77	121602285	rpsU	BARBAKC583_0302	-	30S ribosomal protein S21
286	 39.32	0	292192..292308	+	38	121602009	-	BARBAKC583_0304	-	hypothetical protein
287	 37.82	0	292600..293736	+	378	121602726	-	BARBAKC583_0305	-	RND family efflux transporter MFP subunit
288	 38.05	0	293733..296867	+	1044	121602505	-	BARBAKC583_0306	-	RND efflux transporter
289	 38.67	0	297059..298708	+	549	121602677	pgi	BARBAKC583_0307	-	glucose-6-phosphate isomerase
290	 41.35	0	299126..299599	+	157	121602607	rplU	BARBAKC583_0309	-	50S ribosomal protein L21
291	 43.70	+1	299612..299881	+	89	121601722	rpmA	BARBAKC583_0310	-	50S ribosomal protein L27
292	 45.47	+1	300854..302509	+	551	121601739	-	BARBAKC583_0311	-	Brp family immunodominant surface antigen
293	 41.07	0	302541..303122	+	193	121602367	-	BARBAKC583_0312	-	invasion associated locus B family protein
294	 30.08	-2	304186..304308	+	40	121602239	-	BARBAKC583_0313	-	hypothetical protein
295	 38.51	0	304277..307984	+	1235	121602839	-	BARBAKC583_0314	-	Brp family immunodominant surface antigen
296	 41.94	0	308017..308562	+	181	121602109	-	BARBAKC583_0315	-	invasion associated locus B family protein
297	 42.22	0	309236..309955	+	239	121602887	rrmJ	BARBAKC583_0316	-	ribosomal RNA large subunit methyltransferase J
298	 41.86	0	310141..311160	+	339	121602229	obgE	BARBAKC583_0317	-	GTPase ObgE
299	 39.74	0	311166..312305	+	379	121602624	proB	BARBAKC583_0318	-	gamma-glutamyl kinase
300	 40.11	0	312366..313604	+	412	121602628	proA	BARBAKC583_0319	-	gamma-glutamyl phosphate reductase
301	 41.54	0	313634..314218	+	194	121601896	nadD	BARBAKC583_0320	-	nicotinic acid mononucleotide adenylyltransferase
302	 37.15	0	314324..314716	+	130	121602406	-	BARBAKC583_0321	-	iojap-like protein
303	 40.79	0	314717..315199	+	160	121601669	-	BARBAKC583_0322	-	hypothetical protein
304	 35.63	0	315302..316564	+	420	121601891	-	BARBAKC583_0323	-	M23 peptidase domain-containing protein
305	 39.54	0	316554..317858	+	434	121602448	ctpA	BARBAKC583_0324	-	C-terminal processing peptidase
306	 36.65	0	317927..318439	+	170	121602862	nudH	BARBAKC583_0325	-	dinucleoside polyphosphate hydrolase
307	 38.32	0	318556..319116	+	186	121602308	ialB	BARBAKC583_0326	-	invasion protein B
308	 30.61	-2	319442..319735	+	97	121602269	-	BARBAKC583_0327	-	yggt family protein
309	 35.49	0	319766..320089	+	107	121602415	-	BARBAKC583_0328	-	hypothetical protein
39.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.