IslandPathversion 1.0

IslandPath Analysis: Bartonella bacilliformis KC583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.00 STD DEV: 4.11
Bartonella bacilliformis KC583, complete genome - 1..1445021
1283 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
121	 45.70	+1	137075..137260	+	61	121601692	rpmF	BARBAKC583_0122	-	50S ribosomal protein L32
122	 40.24	0	137770..138348	-	192	121602125	-	BARBAKC583_0123	-	CarD family transcriptional regulator
123	 39.53	0	138644..138982	-	112	121602702	fdxA	BARBAKC583_0124	-	ferredoxin
124	 40.33	0	139004..140632	-	542	121602100	-	BARBAKC583_0125	-	MgpS
125	 41.89	0	141073..141984	+	303	121602584	rpoH2	BARBAKC583_0126	-	RNA polymerase factor sigma-32
126	 42.73	0	142085..143500	-	471	121601874	-	BARBAKC583_0127	-	M48 family peptidase
127	 45.13	+1	143768..144403	+	211	121601693	thiN	BARBAKC583_0128	-	thiamine pyrophosphokinase
128	 46.98	+1	144855..145235	+	126	121602244	-	BARBAKC583_0129	-	putative lipoprotein
129	 45.79	+1	145305..147134	+	609	121602193	-	BARBAKC583_0131	-	ABC transporter, ATP-binding protein
130	 39.53	0	147131..147388	-	85	121602617	-	BARBAKC583_0130	-	hypothetical protein
131	 28.89	-2	147458..147592	+	44	121602397	-	BARBAKC583_0132	-	hypothetical protein
132	 34.87	-1	147667..147861	+	64	121602475	-	BARBAKC583_0133	-	hypothetical protein
133	 42.08	0	147893..148258	+	121	121601910	-	BARBAKC583_0134	-	hypothetical protein
134	 36.46	0	148633..149016	-	127	121602313	-	BARBAKC583_0135	-	hypothetical protein
135	 39.31	0	149030..149347	-	105	121601776	-	BARBAKC583_0136	-	hypothetical protein
136	 44.68	+1	149603..151603	+	666	121602913	tkt	BARBAKC583_0137	-	transketolase
137	 44.05	+1	151605..152612	+	335	121602107	gap	BARBAKC583_0138	-	glyceraldehyde-3-phosphate dehydrogenase, type I
138	 36.84	0	152695..152808	+	37	121602374	-	BARBAKC583_0139	-	hypothetical protein
139	 45.55	+1	152911..154113	+	400	121602281	pgk	BARBAKC583_0140	-	phosphoglycerate kinase
140	 46.16	+1	154252..155280	+	342	121602527	fbaB	BARBAKC583_0141	-	fructose-bisphosphate aldolase, class I
141	 46.49	+1	155412..155525	-	37	121601636	-	BARBAKC583_0142	-	hypothetical protein
142	 49.21	+2	155866..155991	+	41	121602679	-	BARBAKC583_0143	-	hypothetical protein
143	 42.66	0	156268..157596	-	442	121601818	tolB	BARBAKC583_0144	-	translocation protein TolB
144	 50.13	+2	157638..159131	-	497	121602816	-	BARBAKC583_0145	-	TolA domain-containing protein
145	 40.40	0	159281..159733	-	150	121602114	tolR	BARBAKC583_0146	-	protein TolR
146	 39.12	0	159746..160453	-	235	121602265	tolQ	BARBAKC583_0147	-	protein TolQ
147	 42.18	0	160943..161383	-	146	121602851	ybgC	BARBAKC583_0148	-	tol-pal system-associated acyl-CoA thioesterase
148	 45.95	+1	161376..162485	-	369	121602504	ruvB	BARBAKC583_0149	-	Holliday junction DNA helicase B
149	 46.02	+1	162493..163146	-	217	121601945	ruvA	BARBAKC583_0150	-	Holliday junction DNA helicase motor protein
150	 46.83	+1	163151..163654	-	167	121602663	ruvC	BARBAKC583_0151	-	Holliday junction resolvase
151	 46.67	+1	163666..163800	+	44	121602093	-	BARBAKC583_0152	-	hypothetical protein
152	 42.00	0	164316..164834	-	172	121602318	-	BARBAKC583_0153	-	hypothetical protein
153	 39.75	0	165212..166318	-	368	121601764	-	BARBAKC583_0154	-	hypothetical protein
154	 41.15	0	166422..167099	+	225	121602143	-	BARBAKC583_0155	-	thiamine-phosphate pyrophosphorylase
155	 44.72	+1	167102..168199	+	365	121602881	-	BARBAKC583_0156	-	hypothetical protein
156	 36.84	0	168444..168557	+	37	121601855	-	BARBAKC583_0157	-	hypothetical protein
157	 41.71	0	168871..169443	+	190	121602398	efp	BARBAKC583_0158	-	elongation factor P
158	 45.96	+1	169447..170238	+	263	121602463	-	BARBAKC583_0159	-	inositol monophosphatase family protein
159	 43.55	+1	170500..172320	-	606	121601907	-	BARBAKC583_0160	-	ABC transporter, permease/ATP-binding protein
160	 41.89	0	172494..172715	+	73	121602080	rpmE	BARBAKC583_0161	-	50S ribosomal protein L31
161	 50.00	+2	173006..173119	-	37	121602809	-	BARBAKC583_0162	-	hypothetical protein
162	 45.92	+1	173273..174019	-	248	121602842	-	BARBAKC583_0163	-	hypothetical protein
163	 41.74	0	174562..175263	+	233	121602280	-	BARBAKC583_0164	-	hypothetical protein
164	 44.00	+1	175581..176105	+	174	121602322	pal	BARBAKC583_0165	-	peptidoglycan-associated lipoprotein
165	 37.98	0	176115..176243	-	42	121601840	-	BARBAKC583_0166	-	hypothetical protein
166	 43.87	+1	177161..179143	+	660	121602616	tilS	BARBAKC583_0167	-	tRNA(Ile)-lysidine synthetase
167	 45.93	+1	179267..181561	+	764	121602051	hflB	BARBAKC583_0168	-	ATP-dependent metallopeptidase HflB
168	 38.33	0	181883..182002	+	39	121602767	-	BARBAKC583_0169	-	hypothetical protein
169	 41.27	0	182173..182298	+	41	121602214	-	BARBAKC583_0170	-	hypothetical protein
170	 44.72	+1	182309..183661	+	450	121602671	glmM	BARBAKC583_0171	-	phosphoglucosamine mutase
171	 38.64	0	184140..184478	+	112	121602057	-	BARBAKC583_0172	-	hypothetical protein
172	 46.19	+1	184498..185469	+	323	121602392	-	BARBAKC583_0173	-	putative tonB-system energizer ExbB
173	 41.18	0	185469..185927	+	152	121601835	exbD	BARBAKC583_0174	-	TonB system transport protein ExbD
174	 42.05	0	186058..186252	+	64	121602266	-	BARBAKC583_0175	-	hypothetical protein
175	 43.54	+1	186417..186563	+	48	121601704	-	BARBAKC583_0176	-	hypothetical protein
176	 55.30	+2	186682..186813	+	43	121602106	-	BARBAKC583_0177	-	hypothetical protein
177	 48.88	+2	187140..187673	-	177	121602826	-	BARBAKC583_0178	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
178	 49.12	+2	188468..188581	+	37	121602053	-	BARBAKC583_0179	-	hypothetical protein
179	 45.52	+1	188775..189578	-	267	121602610	-	BARBAKC583_0180	-	hypothetical protein
180	 46.67	+1	189905..190024	+	39	121602169	-	BARBAKC583_0181	-	hypothetical protein
181	 43.80	+1	190035..190607	-	190	121602762	-	BARBAKC583_0182	-	DsbB domain-containing protein
182	 39.61	0	190620..191240	-	206	121602780	-	BARBAKC583_0183	-	hypothetical protein
183	 43.24	+1	192709..192930	-	73	121602906	-	BARBAKC583_0185	-	hypothetical protein
184	 43.68	+1	192958..193614	-	218	121601674	-	BARBAKC583_0186	-	hypothetical protein
185	 51.08	+2	193655..196021	-	788	121602385	-	BARBAKC583_0187	-	putative DNA primase/helicase
186	 43.33	+1	196703..196822	+	39	121601653	-	BARBAKC583_0189	-	hypothetical protein
187	 46.61	+1	196797..197813	-	338	121602601	-	BARBAKC583_0188	-	hypothetical protein
188	 54.85	+2	197896..198225	+	109	121602058	-	BARBAKC583_0190	-	hypothetical protein
189	 30.95	-1	198315..198440	+	41	121602428	-	BARBAKC583_0191	-	hypothetical protein
190	 40.95	0	198720..199034	+	104	121601912	-	BARBAKC583_0192	-	hypothetical protein
191	 41.79	0	199345..199758	+	137	121601711	-	BARBAKC583_0193	-	hypothetical protein
192	 47.62	+2	199764..199952	+	62	121602420	-	BARBAKC583_0194	-	hypothetical protein
193	 42.79	0	199958..200158	+	66	121602781	-	BARBAKC583_0195	-	hypothetical protein
194	 45.80	+1	200489..201226	+	245	121602812	-	BARBAKC583_0196	-	putative exonuclease
195	 52.08	+2	201257..201400	+	47	121602277	-	BARBAKC583_0197	-	hypothetical protein
196	 33.33	-1	202279..202434	-	51	121601927	-	BARBAKC583_0199	-	hypothetical protein
197	 36.26	0	202405..202575	+	56	121602188	-	BARBAKC583_0200	-	hypothetical protein
198	 47.30	+2	202726..204021	+	431	121602447	murA	BARBAKC583_0201	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
199	 44.99	+1	204599..205447	-	282	121601893	-	BARBAKC583_0202	-	hypothetical protein
200	 44.29	+1	205450..206088	-	212	121602028	-	BARBAKC583_0203	-	5,10-methenyltetrahydrofolate synthetase
201	 44.44	+1	207002..207640	-	212	121602717	-	BARBAKC583_0204	-	TPR repeat-containing protein
202	 45.24	+1	208027..208152	-	41	121602010	rpmJ	BARBAKC583_0205	-	50S ribosomal protein L36
203	 46.85	+1	208634..208855	-	73	121602790	-	BARBAKC583_0206	-	hypothetical protein
204	 49.79	+2	208863..209105	-	80	121602204	-	BARBAKC583_0207	-	hypothetical protein
205	 44.79	+1	209516..210667	-	383	121602783	purK	BARBAKC583_0208	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
206	 49.00	+2	210676..211173	-	165	121601760	purE	BARBAKC583_0209	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
207	 51.22	+2	211621..211743	+	40	121602386	-	BARBAKC583_0210	-	hypothetical protein
208	 38.81	0	212182..212400	+	72	121602253	infA	BARBAKC583_0211	-	translation initiation factor IF-1
209	 42.68	0	212877..213539	+	220	121602672	maf2	BARBAKC583_0212	-	septum formation protein Maf
210	 44.26	+1	213698..213880	+	60	121601685	-	BARBAKC583_0213	-	hypothetical protein
211	 57.26	+2	214274..214390	+	38	121602376	-	BARBAKC583_0214	-	hypothetical protein
212	 39.47	0	214740..214853	+	37	121602139	-	BARBAKC583_0215	-	hypothetical protein
213	 45.10	+1	214858..217458	+	866	121602872	clpB	BARBAKC583_0216	-	chaperone ClpB
214	 42.42	0	217705..217902	+	65	121602890	-	BARBAKC583_0217	-	hypothetical protein
215	 43.06	0	218734..218949	+	71	121601688	-	BARBAKC583_0219	-	hypothetical protein
216	 44.78	+1	219843..220043	+	66	121602211	-	BARBAKC583_0221	-	hypothetical protein
217	 38.36	0	220520..220678	+	52	121602706	-	BARBAKC583_0223	-	hypothetical protein
218	 38.99	0	220931..221089	+	52	121601976	-	BARBAKC583_0224	-	hypothetical protein
219	 39.17	0	222089..222208	+	39	121602882	-	BARBAKC583_0225	-	hypothetical protein
220	 41.74	0	223488..223844	+	118	121602401	-	BARBAKC583_0226	-	hypothetical protein
39.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.