IslandPathversion 1.0

IslandPath Analysis: Bartonella bacilliformis KC583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 39.00 STD DEV: 4.11
Bartonella bacilliformis KC583, complete genome - 1..1445021
1283 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1184	 39.62	0	1318143..1320161	-	672	121601749	cyoB	BARBAKC583_1274	-	cytochrome o ubiquinol oxidase, subunit I
1185	 39.51	0	1320256..1321227	-	323	121602293	cyoA	BARBAKC583_1275	-	cytochrome o ubiquinol oxidase, subunit II
1186	 35.64	0	1321332..1321808	-	158	121601715	aroQ	BARBAKC583_1276	-	3-dehydroquinate dehydratase
1187	 42.83	0	1321846..1322982	-	378	121602459	recF	BARBAKC583_1277	-	recombination protein F
1188	 39.48	0	1323016..1324137	-	373	121601944	dnaN	BARBAKC583_1278	-	DNA polymerase III subunit beta
1189	 39.68	0	1324320..1325894	-	524	121602078	dnaA	BARBAKC583_1279	-	chromosomal replication initiation protein
1190	 32.61	-1	1326118..1326255	-	45	121602795	-	BARBAKC583_1280	-	hypothetical protein
1191	 44.19	+1	1326576..1326842	-	88	121602324	rpsT	BARBAKC583_1281	-	30S ribosomal protein S20
1192	 40.74	0	1327051..1329738	-	895	121601798	acnA	BARBAKC583_1282	-	aconitate hydratase
1193	 25.64	-2	1329919..1330035	+	38	121602849	-	BARBAKC583_1283	-	hypothetical protein
1194	 39.55	0	1330032..1330658	+	208	121602130	ccmA	BARBAKC583_1284	-	cytochrome c biogenesis protein CcmA
1195	 37.99	0	1330655..1331320	+	221	121602283	ccmB	BARBAKC583_1285	-	heme exporter protein CcmB
1196	 42.05	0	1331364..1332143	+	259	121602712	ccmC	BARBAKC583_1286	-	heme exporter protein CcmC
1197	 36.90	0	1332131..1332382	+	83	121601995	ccmD	BARBAKC583_1287	-	heme exporter protein CcmD
1198	 34.45	-1	1332357..1332983	+	208	121602530	cycY	BARBAKC583_1288	-	thiol:disulfide interchange protein CycY
1199	 42.04	0	1333243..1333782	-	179	121602326	-	BARBAKC583_1289	-	GcrA cell cycle regulator
1200	 39.47	0	1334214..1335419	+	401	121601786	argD	BARBAKC583_1290	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
1201	 41.59	0	1335425..1336357	+	310	121602135	argF	BARBAKC583_1291	-	ornithine carbamoyltransferase
1202	 37.98	0	1336388..1337377	+	329	121602918	hslO	BARBAKC583_1292	-	Hsp33-like chaperonin
1203	 41.67	0	1337802..1338389	-	195	121602786	-	BARBAKC583_1293	-	Smr domain-containing protein
1204	 35.64	0	1338435..1339127	-	230	121602069	-	BARBAKC583_1294	-	Tim44 domain-containing protein
1205	 30.90	-1	1339339..1339872	+	177	121602351	-	BARBAKC583_1295	-	fxsA cytoplasmic membrane protein
1206	 36.67	0	1339975..1340454	+	159	121601951	secB	BARBAKC583_1296	-	preprotein translocase subunit SecB
1207	 29.08	-2	1340762..1340902	-	46	121602551	-	BARBAKC583_1297	-	hypothetical protein
1208	 39.83	0	1340973..1342295	-	440	121601662	-	BARBAKC583_1298	-	malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)
1209	 40.51	0	1342493..1345237	+	914	121602103	mutS	BARBAKC583_1299	-	DNA mismatch repair protein
1210	 43.54	+1	1345304..1345450	-	48	121602510	-	BARBAKC583_1300	-	hypothetical protein
1211	 38.62	0	1345536..1345913	-	125	121601974	-	BARBAKC583_1302	-	hypothetical protein
1212	 40.80	0	1346099..1347424	+	441	121602830	aroA	BARBAKC583_1303	-	3-phosphoshikimate 1-carboxyvinyltransferase
1213	 41.05	0	1347421..1348068	+	215	121602868	cmk	BARBAKC583_1304	-	cytidylate kinase
1214	 40.80	0	1348203..1349903	+	566	121602294	rpsA	BARBAKC583_1305	-	30S ribosomal protein S1
1215	 39.69	0	1350065..1358719	+	2884	121601866	-	BARBAKC583_1306	-	cyclic beta 1-2 glucan synthase
1216	 40.08	0	1358856..1360130	+	424	121602457	pncB	BARBAKC583_1307	-	nicotinate phosphoribosyltransferase
1217	 35.76	0	1360723..1361628	-	301	121602146	afeD	BARBAKC583_1308	-	iron chelate ABC transporter, permease protein AfeD
1218	 36.01	0	1361633..1362490	-	285	121602630	afeC	BARBAKC583_1309	-	iron chelate ABC transporter, permease protein AfeC
1219	 40.21	0	1362487..1363329	-	280	121602312	afeB	BARBAKC583_1310	-	iron chelate ABC transporter, ATP-binding protein
1220	 37.51	0	1363326..1364234	-	302	121602843	afeA	BARBAKC583_1311	-	iron chelate ABC transporter, periplasmic iron chelate-binding protein
1221	 41.04	0	1364506..1366917	-	803	121602576	pheT	BARBAKC583_1312	-	phenylalanyl-tRNA synthetase subunit beta
1222	 40.98	0	1366949..1368034	-	361	121601863	pheS	BARBAKC583_1313	-	phenylalanyl-tRNA synthetase, alpha subunit
1223	 41.29	0	1368127..1368528	-	133	121601857	rplT	BARBAKC583_1314	-	50S ribosomal protein L20
1224	 40.69	0	1368562..1368765	-	67	121602467	rpmI	BARBAKC583_1315	-	50S ribosomal protein L35
1225	 40.45	0	1368896..1369654	-	252	121601750	nth	BARBAKC583_1316	-	endonuclease III
1226	 41.29	0	1369830..1370420	-	196	121602310	-	BARBAKC583_1317	-	putative lipoprotein
1227	 38.87	0	1370518..1371690	-	390	121602886	-	BARBAKC583_1318	-	RmuC domain-containing protein
1228	 37.70	0	1371794..1372342	+	182	121602173	def	BARBAKC583_1319	-	peptide deformylase
1229	 44.09	+1	1372343..1373272	+	309	121602824	fmt	BARBAKC583_1320	-	methionyl-tRNA formyltransferase
1230	 44.09	+1	1373274..1374017	+	247	121602227	truA	BARBAKC583_1321	-	tRNA pseudouridine synthase A
1231	 38.83	0	1374050..1374868	-	272	121602626	-	BARBAKC583_1322	-	hypothetical protein
1232	 39.10	0	1375002..1375850	+	282	121602076	dapD	BARBAKC583_1323	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
1233	 40.34	0	1375934..1377775	-	613	121602278	lepA	BARBAKC583_1324	-	GTP-binding protein LepA
1234	 38.30	0	1377951..1378877	-	308	121601712	-	BARBAKC583_1325	-	integral membrane protein
1235	 38.85	0	1378900..1379805	-	301	121602488	argB	BARBAKC583_1326	-	acetylglutamate kinase
1236	 41.80	0	1380271..1381416	-	381	121601759	dnaJ	BARBAKC583_1327	-	chaperone protein DnaJ
1237	 41.35	0	1381574..1383469	-	631	121602692	dnaK	BARBAKC583_1328	-	molecular chaperone DnaK
1238	 30.77	-2	1383535..1383651	-	38	121602711	-	BARBAKC583_1329	-	hypothetical protein
1239	 35.84	0	1384252..1384770	+	172	121602798	-	BARBAKC583_1330	-	hypothetical protein
1240	 31.67	-1	1384970..1385089	+	39	121602046	-	BARBAKC583_1331	-	hypothetical protein
1241	 39.83	0	1385384..1386106	+	240	121601666	bvrR	BARBAKC583_1332	-	transcriptional regulatory protein BvrR
1242	 38.49	0	1386146..1387969	+	607	121602237	bvrS	BARBAKC583_1333	-	sensor histidine kinase BvrS
1243	 39.46	0	1388134..1388802	-	222	121602522	grpE	BARBAKC583_1334	-	co-chaperone GrpE
1244	 42.13	0	1390591..1391238	+	215	121602526	rdgB	BARBAKC583_1336	-	putative deoxyribonucleotide triphosphate pyrophosphatase
1245	 42.15	0	1391235..1392413	+	392	121602251	-	BARBAKC583_1337	-	coproporphyrinogen III oxidase
1246	 40.07	0	1392461..1393633	-	390	121602384	dapE	BARBAKC583_1338	-	succinyl-diaminopimelate desuccinylase
1247	 41.94	0	1393752..1394483	-	243	121602684	-	BARBAKC583_1339	-	hypothetical protein
1248	 38.46	0	1394539..1395318	-	259	121602275	-	BARBAKC583_1340	-	hypothetical protein
1249	 38.89	0	1395509..1396030	+	173	121601938	infC	BARBAKC583_1341	-	translation initiation factor IF-3
1250	 37.75	0	1396249..1398015	+	588	121602516	-	BARBAKC583_1342	-	ABC transporter, permease/ATP-binding protein
1251	 37.72	0	1398041..1402693	-	1550	121602871	-	BARBAKC583_1343	-	hypothetical protein
1252	 40.37	0	1402693..1404654	-	653	121602140	-	BARBAKC583_1344	-	OMP85 family outer membrane protein
1253	 44.36	+1	1405064..1406596	+	510	121602697	-	BARBAKC583_1345	-	Mg chelatase-like protein
1254	 40.78	0	1406996..1409425	+	809	121601805	gyrB	BARBAKC583_1346	-	DNA gyrase subunit B
1255	 41.00	0	1409543..1410325	+	260	121602563	ubiE	BARBAKC583_1347	-	ubiquinone/menaquinone biosynthesis methyltransferase
1256	 39.50	0	1410329..1411918	+	529	121601655	ubiB	BARBAKC583_1348	-	2-polyprenylphenol 6-hydroxylase
1257	 42.31	0	1412156..1413391	+	411	121601794	coaBC	BARBAKC583_1349	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1258	 37.50	0	1413786..1414505	+	239	121602267	-	BARBAKC583_1350	-	CysZ-like protein
1259	 41.26	0	1414777..1415697	+	306	121602685	accD	BARBAKC583_1351	-	acetyl-CoA carboxylase subunit beta
1260	 41.12	0	1415701..1417023	+	440	121602089	folC	BARBAKC583_1352	-	folylpolyglutamate synthase
1261	 39.54	0	1417067..1418065	+	332	121602183	-	BARBAKC583_1353	-	NAD dependent epimerase/dehydratase family protein
1262	 39.07	0	1418610..1421084	+	824	121602765	-	BARBAKC583_1354	-	sensor histidine kinase
1263	 38.62	0	1421150..1422643	+	497	121602688	-	BARBAKC583_1355	-	P-loop hydrolase/phosphotransferase
1264	 41.16	0	1422818..1425961	+	1047	121602115	addB	BARBAKC583_1356	-	double-strand break repair protein AddB
1265	 39.73	0	1425958..1429425	+	1155	121601832	addA	BARBAKC583_1357	-	double-strand break repair helicase AddA
1266	 38.58	0	1429536..1429859	+	107	121602565	trx	BARBAKC583_1358	-	thioredoxin
1267	 40.94	0	1429941..1431518	-	525	121602340	prfC	BARBAKC583_1359	-	peptide chain release factor 3
1268	 40.79	0	1431518..1433179	-	553	121602260	lysK	BARBAKC583_1360	-	lysyl-tRNA synthetase
1269	 39.62	0	1433381..1434604	-	407	121602703	argG	BARBAKC583_1361	-	argininosuccinate synthase
1270	 38.01	0	1434789..1435430	+	213	121602652	-	BARBAKC583_1363	-	LysE family translocator protein
1271	 39.92	0	1435427..1436671	-	414	121601967	-	BARBAKC583_1362	-	radical SAM protein
1272	 40.20	0	1436699..1437208	-	169	121602279	-	BARBAKC583_1364	-	hypothetical protein
1273	 38.92	0	1437735..1438199	-	154	121602802	ptsN	BARBAKC583_1365	-	PTS IIA-like nitrogen-regulatory protein PtsN
1274	 29.74	-2	1438345..1438650	-	101	121601714	-	BARBAKC583_1366	-	hypothetical protein
1275	 38.19	0	1439033..1439176	-	47	121602583	-	BARBAKC583_1367	-	hypothetical protein
1276	 38.87	0	1439376..1440170	-	264	121601906	-	BARBAKC583_1368	-	ABC transporter, ATP-binding protein
1277	 35.16	0	1440177..1440779	-	200	121602088	-	BARBAKC583_1369	-	OstA family protein
1278	 35.19	0	1440847..1441491	-	214	121602696	-	BARBAKC583_1370	-	hypothetical protein
1279	 40.14	0	1441680..1441958	+	92	121602248	ihfB	BARBAKC583_1371	-	integration host factor subunit beta
1280	 31.75	-1	1441967..1442218	+	83	121602808	-	BARBAKC583_1372	-	hypothetical protein
1281	 41.48	0	1442418..1443362	+	314	121601696	-	BARBAKC583_1373	-	putative SAM-dependent methyltransferase
1282	 40.73	0	1443365..1444189	+	274	121602580	-	BARBAKC583_1374	-	RNA methyltransferase
1283	 34.74	-1	1444216..1444713	+	165	121601961	lspA	BARBAKC583_1375	-	signal peptidase II
39.00	MEAN

4.11	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.